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Volumn 6, Issue 2, 2011, Pages

Microdroplet-enabled highly parallel co-cultivation of microbial communities

Author keywords

[No Author keywords available]

Indexed keywords

OIL;

EID: 79952164230     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0017019     Document Type: Article
Times cited : (140)

References (41)
  • 1
    • 44449085974 scopus 로고    scopus 로고
    • Microbial ecology of ocean biogeochemistry: A community perspective
    • Strom SL, (2008) Microbial ecology of ocean biogeochemistry: A community perspective. Science 320: 1043-1045.
    • (2008) Science , vol.320 , pp. 1043-1045
    • Strom, S.L.1
  • 2
    • 66149119261 scopus 로고    scopus 로고
    • The microbial ocean from genomes to biomes
    • DeLong EF, (2009) The microbial ocean from genomes to biomes. Nature 459: 200-206.
    • (2009) Nature , vol.459 , pp. 200-206
    • DeLong, E.F.1
  • 3
    • 0038009298 scopus 로고    scopus 로고
    • Diversity and dynamics of microbial communities in soils from agro-ecosystems
    • Buckley DH, Schmidt TM, (2003) Diversity and dynamics of microbial communities in soils from agro-ecosystems. Environmental Microbiology 5: 441-452.
    • (2003) Environmental Microbiology , vol.5 , pp. 441-452
    • Buckley, D.H.1    Schmidt, T.M.2
  • 4
    • 43249106220 scopus 로고    scopus 로고
    • The unseen majority: Soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems (vol 11, pg 296, 2008)
    • van der Heijen MGA, (2008) The unseen majority: Soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems (vol 11, pg 296, 2008). Ecology Letters 11: 651-651.
    • (2008) Ecology Letters , vol.11 , pp. 651
    • van der Heijen, M.G.A.1
  • 5
    • 34248165025 scopus 로고    scopus 로고
    • Development of novel method for screening microorganisms using symbiotic association between insect (Coptotermes formosanus Shiraki) and intestinal microorganisms
    • Hayashi A, Aoyagi H, Yoshimura T, Tanaka H, (2007) Development of novel method for screening microorganisms using symbiotic association between insect (Coptotermes formosanus Shiraki) and intestinal microorganisms. Journal of Bioscience and Bioengineering 103: 358-367.
    • (2007) Journal of Bioscience and Bioengineering , vol.103 , pp. 358-367
    • Hayashi, A.1    Aoyagi, H.2    Yoshimura, T.3    Tanaka, H.4
  • 8
    • 38349078772 scopus 로고    scopus 로고
    • Probiotic modulation of symbiotic gut microbial-host metabolic interactions in a humanized microbiome mouse model
    • Martin FPJ, Wang Y, Sprenger N, Yap IKS, Lundstedt T, et al. (2008) Probiotic modulation of symbiotic gut microbial-host metabolic interactions in a humanized microbiome mouse model. Molecular Systems Biology 4.
    • (2008) Molecular Systems Biology , vol.4
    • Martin, F.P.J.1    Wang, Y.2    Sprenger, N.3    Yap, I.K.S.4    Lundstedt, T.5
  • 11
    • 35348961403 scopus 로고    scopus 로고
    • An ecological and evolutionary perspective on human-microbe mutualism and disease
    • Dethlefsen L, McFall-Ngai M, Relman DA, (2007) An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 449: 811-818.
    • (2007) Nature , vol.449 , pp. 811-818
    • Dethlefsen, L.1    McFall-Ngai, M.2    Relman, D.A.3
  • 12
  • 14
    • 44449106055 scopus 로고    scopus 로고
    • A microbial symbiosis factor prevents intestinal inflammatory disease
    • Mazmanian SK, Round JL, Kasper DL, (2008) A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453: 620-625.
    • (2008) Nature , vol.453 , pp. 620-625
    • Mazmanian, S.K.1    Round, J.L.2    Kasper, D.L.3
  • 15
    • 0006069346 scopus 로고
    • Microbial diversity: of value to whom?
    • Tiedje JM, (1994) Microbial diversity: of value to whom? ASM News 60: 524-525.
    • (1994) ASM News , vol.60 , pp. 524-525
    • Tiedje, J.M.1
  • 16
    • 0037052320 scopus 로고    scopus 로고
    • Isolating uncultivable microorganisms in pure culture in a simulated natural environment
    • Kaeberlein T, Lewis K, Epstein SS, (2002) Isolating uncultivable microorganisms in pure culture in a simulated natural environment. Science 296: 1127-1129.
    • (2002) Science , vol.296 , pp. 1127-1129
    • Kaeberlein, T.1    Lewis, K.2    Epstein, S.S.3
  • 17
    • 70249150400 scopus 로고    scopus 로고
    • A Mesocosm of Lactobacillus johnsonii, Bifidobacterium longum, and Escherichia coli in the Mouse Gut
    • Denou E, Rezzonico E, Panoff JM, Arigoni F, Brussow H, (2009) A Mesocosm of Lactobacillus johnsonii, Bifidobacterium longum, and Escherichia coli in the Mouse Gut. DNA and Cell Biology 28: 413-422.
    • (2009) DNA and Cell Biology , vol.28 , pp. 413-422
    • Denou, E.1    Rezzonico, E.2    Panoff, J.M.3    Arigoni, F.4    Brussow, H.5
  • 18
    • 33646585117 scopus 로고    scopus 로고
    • Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut
    • Belenguer A, Duncan SH, Calder AG, Holtrop G, Louis P, et al. (2006) Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut. Applied and Environmental Microbiology 72: 3593-3599.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 3593-3599
    • Belenguer, A.1    Duncan, S.H.2    Calder, A.G.3    Holtrop, G.4    Louis, P.5
  • 19
    • 0036731699 scopus 로고    scopus 로고
    • Listening in on bacteria: acyl-homoserine lactone signalling
    • Fuqua C, Greenberg EP, (2002) Listening in on bacteria: acyl-homoserine lactone signalling. Nat Rev Mol Cell Biol 3: 685-695.
    • (2002) Nat Rev Mol Cell Biol , vol.3 , pp. 685-695
    • Fuqua, C.1    Greenberg, E.P.2
  • 21
    • 70349542895 scopus 로고    scopus 로고
    • Interspecies Chemical Communication in Bacterial Development
    • Straight PD, Kolter R, (2009) Interspecies Chemical Communication in Bacterial Development. Annual Review of Microbiology 63: 99-118.
    • (2009) Annual Review of Microbiology , vol.63 , pp. 99-118
    • Straight, P.D.1    Kolter, R.2
  • 22
    • 29144482711 scopus 로고    scopus 로고
    • Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria
    • Ferrari BC, Binnerup SJ, Gillings M, (2005) Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria. Applied and Environmental Microbiology 71: 8714-8720.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8714-8720
    • Ferrari, B.C.1    Binnerup, S.J.2    Gillings, M.3
  • 24
    • 50249237865 scopus 로고    scopus 로고
    • Cultivating previously uncultured soil bacteria using a soil substrate membrane system
    • Ferrari BC, Winsley T, Gillings M, Binnerup S, (2008) Cultivating previously uncultured soil bacteria using a soil substrate membrane system. Nature Protocols 3: 1261-1269.
    • (2008) Nature Protocols , vol.3 , pp. 1261-1269
    • Ferrari, B.C.1    Winsley, T.2    Gillings, M.3    Binnerup, S.4
  • 25
    • 70349448695 scopus 로고    scopus 로고
    • Cultivating the uncultured: limits, advances and future challenges
    • Alain K, Querellou J, (2009) Cultivating the uncultured: limits, advances and future challenges. Extremophiles 13: 583-594.
    • (2009) Extremophiles , vol.13 , pp. 583-594
    • Alain, K.1    Querellou, J.2
  • 26
  • 28
    • 70349769737 scopus 로고    scopus 로고
    • Microfluidic Confinement of Single Cells of Bacteria in Small Volumes Initiates High-Density Behavior of Quorum Sensing and Growth and Reveals Its Variability
    • Boedicker JQ, Vincent ME, Ismagilov RF, (2009) Microfluidic Confinement of Single Cells of Bacteria in Small Volumes Initiates High-Density Behavior of Quorum Sensing and Growth and Reveals Its Variability. Angewandte Chemie-International Edition 48: 5908-5911.
    • (2009) Angewandte Chemie-International Edition , vol.48 , pp. 5908-5911
    • Boedicker, J.Q.1    Vincent, M.E.2    Ismagilov, R.F.3
  • 29
    • 1842610169 scopus 로고    scopus 로고
    • Segmented flow generation by chip reactors for highly parallelized cell cultivation
    • Grodrian A, Metze J, Henkel T, Martin K, Roth M, et al. (2004) Segmented flow generation by chip reactors for highly parallelized cell cultivation. Biosensors & Bioelectronics 19: 1421-1428.
    • (2004) Biosensors & Bioelectronics , vol.19 , pp. 1421-1428
    • Grodrian, A.1    Metze, J.2    Henkel, T.3    Martin, K.4    Roth, M.5
  • 30
    • 69549121922 scopus 로고    scopus 로고
    • Isolation, incubation, and parallel functional testing and identification by FISH of rare microbial single-copy cells from multi-species mixtures using the combination of chemistrode and stochastic confinement
    • Liu WS, Kim HJ, Lucchetta EM, Du WB, Ismagilov RF, (2009) Isolation, incubation, and parallel functional testing and identification by FISH of rare microbial single-copy cells from multi-species mixtures using the combination of chemistrode and stochastic confinement. Lab on a Chip 9: 2153-2162.
    • (2009) Lab on a Chip , vol.9 , pp. 2153-2162
    • Liu, W.S.1    Kim, H.J.2    Lucchetta, E.M.3    Du, W.B.4    Ismagilov, R.F.5
  • 31
    • 2342643429 scopus 로고    scopus 로고
    • Generation of larger numbers of separated microbial populations by cultivation in segmented-flow microdevices
    • Martin K, Henkel T, Baier V, Grodrian A, Schon T, et al. (2003) Generation of larger numbers of separated microbial populations by cultivation in segmented-flow microdevices. Lab on a Chip 3: 202-207.
    • (2003) Lab on a Chip , vol.3 , pp. 202-207
    • Martin, K.1    Henkel, T.2    Baier, V.3    Grodrian, A.4    Schon, T.5
  • 32
    • 46149091744 scopus 로고    scopus 로고
    • Drop-based microfluidic devices for encapsulation of single cells
    • Koster S, Angile FE, Duan H, Agresti JJ, Wintner A, et al. (2008) Drop-based microfluidic devices for encapsulation of single cells. Lab on a Chip 8: 1110-1115.
    • (2008) Lab on a Chip , vol.8 , pp. 1110-1115
    • Koster, S.1    Angile, F.E.2    Duan, H.3    Agresti, J.J.4    Wintner, A.5
  • 33
    • 43149111583 scopus 로고    scopus 로고
    • Droplet-based microfluidic platforms for the encapsulation and screening of mammalian cells and multicellular organisms
    • Clausell-Tormos J, Lieber D, Baret JC, El-Harrak A, Miller OJ, et al. (2008) Droplet-based microfluidic platforms for the encapsulation and screening of mammalian cells and multicellular organisms. Chemistry & Biology 15: 427-437.
    • (2008) Chemistry & Biology , vol.15 , pp. 427-437
    • Clausell-Tormos, J.1    Lieber, D.2    Baret, J.C.3    El-Harrak, A.4    Miller, O.J.5
  • 34
    • 67649973848 scopus 로고    scopus 로고
    • Fluorescence-activated droplet sorting (FADS): efficient microfluidic cell sorting based on enzymatic activity
    • Baret JC, Miller OJ, Taly V, Ryckelynck M, El-Harrak A, et al. (2009) Fluorescence-activated droplet sorting (FADS): efficient microfluidic cell sorting based on enzymatic activity. Lab on a Chip 9: 1850-1858.
    • (2009) Lab on a Chip , vol.9 , pp. 1850-1858
    • Baret, J.C.1    Miller, O.J.2    Taly, V.3    Ryckelynck, M.4    El-Harrak, A.5
  • 36
    • 0037425743 scopus 로고    scopus 로고
    • Gut flora in health and disease
    • Guarner F, Malagelada JR, (2003) Gut flora in health and disease. Lancet 361: 512-519.
    • (2003) Lancet , vol.361 , pp. 512-519
    • Guarner, F.1    Malagelada, J.R.2
  • 38
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu WT, Marsh TL, Cheng H, Forney LJ, (1997) Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Applied and Environmental Microbiology 63: 4516-4522.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 39
    • 51349161191 scopus 로고    scopus 로고
    • High-resolution metagenomics targets specific functional types in complex microbial communities
    • Kalyuzhnaya MG, Lapidus A, Ivanova N, Copeland AC, McHardy AC, et al. (2008) High-resolution metagenomics targets specific functional types in complex microbial communities. Nature Biotechnology 26: 1029-1034.
    • (2008) Nature Biotechnology , vol.26 , pp. 1029-1034
    • Kalyuzhnaya, M.G.1    Lapidus, A.2    Ivanova, N.3    Copeland, A.C.4    McHardy, A.C.5
  • 40
    • 1542377296 scopus 로고    scopus 로고
    • Community structure and metabolism through reconstruction of microbial genomes from the environment
    • Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, et al. (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43.
    • (2004) Nature , vol.428 , pp. 37-43
    • Tyson, G.W.1    Chapman, J.2    Hugenholtz, P.3    Allen, E.E.4    Ram, R.J.5


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