-
1
-
-
59549089751
-
Villosiclava virens gen. Nov., comb. Nov., the teleomorph of Ustilaginoidea virens, the causal agent of rice false smut
-
Tanaka, E., Ashizawa, T., Sonoda, R. & Tanaka, C. Villosiclava virens gen. nov., comb. nov., the teleomorph of Ustilaginoidea virens, the causal agent of rice false smut. Mycotaxon 106, 491-501 (2008).
-
(2008)
Mycotaxon
, vol.106
, pp. 491-501
-
-
Tanaka, E.1
Ashizawa, T.2
Sonoda, R.3
Tanaka, C.4
-
2
-
-
0347553527
-
Some extra-European fungi
-
Cooke, M. C. Some extra-European fungi. Grevillea 7, 13-15 (1878).
-
(1878)
Grevillea
, vol.7
, pp. 13-15
-
-
Cooke, M.C.1
-
3
-
-
1542277033
-
Outbreak of false smut of rice in Louisiana
-
Rush, M. C., Shahjahan, A., Jones, J. P. & Groth, D. E. Outbreak of false smut of rice in Louisiana. Plant Dis. 84, 100-100 (2000).
-
(2000)
Plant Dis
, vol.84
, pp. 100-100
-
-
Rush, M.C.1
Shahjahan, A.2
Jones, J.P.3
Groth, D.E.4
-
4
-
-
84872146129
-
An unusual rice false smut epidemic reported in Raigarh District, Chhattisgarh, India
-
Singh, A. K. & Pophaly, D. J. An unusual rice false smut epidemic reported in Raigarh District, Chhattisgarh, India. Int. Rice Res. Notes 35, 1-3 (2010).
-
(2010)
Int. Rice Res. Notes
, vol.35
, pp. 1-3
-
-
Singh, A.K.1
Pophaly, D.J.2
-
5
-
-
84898648714
-
Progress in the study of false smut disease in rice
-
Guo, X. et al. Progress in the study of false smut disease in rice. J. Agr. Sci. Tech. 2, 1211-1217 (2012).
-
(2012)
J. Agr. Sci. Tech
, vol.2
, pp. 1211-1217
-
-
Guo, X.1
-
6
-
-
84872135965
-
Occurrence and development of sclerotia of the rice false smut fungus
-
Ikegami, H. Occurrence and development of sclerotia of the rice false smut fungus. Res. Bull. Fac. Agr. 18, 47-53 (1963).
-
(1963)
Res. Bull. Fac. Agr
, vol.18
, pp. 47-53
-
-
Ikegami, H.1
-
7
-
-
84866890440
-
Determination and analysis of Ustiloxins A and B by LC-ESI-MS and HPLC in false smut balls of rice
-
Shan, T. et al. Determination and analysis of Ustiloxins A and B by LC-ESI-MS and HPLC in false smut balls of rice. Int. J. Mol. Sci. 13, 11275-11287 (2012).
-
(2012)
Int. J. Mol. Sci
, vol.13
, pp. 11275-11287
-
-
Shan, T.1
-
8
-
-
0028016268
-
Ustiloxins, antimitotic cyclic peptides from false smut balls on rice panicles caused by Ustilaginoidea virens
-
Koiso, Y. et al. Ustiloxins, antimitotic cyclic peptides from false smut balls on rice panicles caused by Ustilaginoidea virens. J. Antibiot. 47, 765-773 (1994). (Pubitemid 24233406)
-
(1994)
Journal of Antibiotics
, vol.47
, Issue.7
, pp. 765-773
-
-
Koiso, Y.1
Li, Y.2
Iwasaki, S.3
Hanaoka, K.4
Kobayashi, T.5
Sonoda, R.6
Fujita, Y.7
Yaegashi, H.8
Sato, Z.9
-
9
-
-
0023854824
-
Further characterization of seven bis(naphtho-γ-pyrone) congeners of ustilaginoidins, coloring matters of Claviceps virens (Ustilaginoidea virens)
-
Koyama, K. & Natori, S. Further characterization of seven bis (naphtho-gpyrone) congeners of ustilaginoidins, coloring matters of Claviceps virens (Ustilaginoidea virens). Chem. Pharm. Bull. 36, 146-152 (1988). (Pubitemid 18073380)
-
(1988)
Chemical and Pharmaceutical Bulletin
, vol.36
, Issue.1
, pp. 146-152
-
-
Koyama, K.1
Natori, S.2
-
10
-
-
0023723836
-
Cytotoxicity and antitumor activities of fungal bis(naphtho-gamma-pyrone) derivatives
-
Koyama, K., Ominato, K., Natori, S., Tashiro, T. & Tsuruo, T. Cytotoxicity and antitumor activities of fungal bis(naphtho-gamma-pyrone) derivatives. J. Pharmacobiodyn. 11, 630-635 (1998).
-
(1998)
J. Pharmacobiodyn
, vol.11
, pp. 630-635
-
-
Koyama, K.1
Ominato, K.2
Natori, S.3
Tashiro, T.4
Tsuruo, T.5
-
11
-
-
0029030075
-
Ustiloxins new antimitotic cyclic peptides: Interaction with porcine brain tubulin
-
Li, Y., Koiso, Y., Kobayashi, H., Hashimoto, Y. & Iwasaki, S. Ustiloxins, new antimitotic cyclic peptides: interaction with porcine brain tubulin. Biochem. Pharmacol. 49, 1367-1372 (1995).
-
(1995)
Biochem. Pharmacol
, vol.49
, pp. 1367-1372
-
-
Li, Y.1
Koiso, Y.2
Kobayashi, H.3
Hashimoto, Y.4
Iwasaki, S.5
-
12
-
-
84866910595
-
Mycotoxins: Properties
-
eds Melborn, B. & Greene, J. C Nova Science Publishers
-
Zhou, L. et al. in Mycotoxins: Properties, Applications and Hazards (eds Melborn, B. & Greene, J. C.) 109-130 (Nova Science Publishers, 2012).
-
(2012)
Applications and Hazards
, pp. 109-130
-
-
Zhou, L.1
-
13
-
-
1942465342
-
False smut disease of rice: A review
-
Biswas, A. False smut disease of rice: a review. Environ. Ecol. 19, 67-83 (2001).
-
(2001)
Environ. Ecol
, vol.19
, pp. 67-83
-
-
Biswas, A.1
-
14
-
-
59549097105
-
Sclerotial germination and ascospore formation of Claviceps oryzae sativae in India
-
Singh, R. A. & Dubey, K. S. Sclerotial germination and ascospore formation of Claviceps oryzae sativae in India. Indian Phytopathol. 37, 168-170 (1984).
-
(1984)
Indian Phytopathol
, vol.37
, pp. 168-170
-
-
Singh, R.A.1
Dubey, K.S.2
-
15
-
-
84872155439
-
Role of Panicum trypheron in annual recurrence of false smut of rice
-
Shetty, S. A. & Shetty, H. S. Role of Panicum trypheron in annual recurrence of false smut of rice. Transact. Brit. Mycol. Soc. 88, 409-411 (1987).
-
(1987)
Transact. Brit. Mycol. Soc
, vol.88
, pp. 409-411
-
-
Shetty, S.A.1
Shetty, H.S.2
-
17
-
-
84872126747
-
Elucidation of the infection process of Ustilaginoidea virens (teleomorph: Villosiclava virens) in rice spikelets
-
Tang, Y. X. et al. Elucidation of the infection process of Ustilaginoidea virens (teleomorph: Villosiclava virens) in rice spikelets. Plant Pathol. 62, 1-8 (2013).
-
(2013)
Plant Pathol
, vol.62
, pp. 1-8
-
-
Tang, Y.X.1
-
18
-
-
84863342054
-
Host jumping onto close relatives and across kingdoms by Tyrannicordyceps (Clavicipitaceae) gen. Nov. and Ustilaginoidea- (Clavicipitaceae
-
Kepler, R. M. et al. Host jumping onto close relatives and across kingdoms by Tyrannicordyceps (Clavicipitaceae) gen. nov. and Ustilaginoidea- (Clavicipitaceae). Am. J. Bot. 99, 552-561 (2012).
-
(2012)
Am. J. Bot
, vol.99
, pp. 552-561
-
-
Kepler, R.M.1
-
19
-
-
6044250264
-
Phylogenetic placement of the anamorphic tribe Ustilaginoideae (Hypocreales, Ascomycota)
-
Bischoff, J. F., Sullivan, R. F., Kjer, K. M. & White, J. F. Phylogenetic placement of the anamorphic tribe Ustilaginoideae (Hypocreales, Ascomycota). Mycologia 96, 1088-1094 (2004). (Pubitemid 39379569)
-
(2004)
Mycologia
, vol.96
, Issue.5
, pp. 1088-1094
-
-
Bischoff, J.F.1
Sullivan, R.F.2
Kjer, K.M.3
White Jr., J.F.4
-
20
-
-
33644873422
-
PHI-base: A new database for pathogen host interactions
-
Winnenburg, R. et al. PHI-base: a new database for pathogen host interactions. Nucleic Acids Res. 34, D459-D464 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Winnenburg, R.1
-
21
-
-
66449136667
-
ABySS: A parallel assembler for short read sequence data
-
Simpson, J. T. et al. ABySS: a parallel assembler for short read sequence data. Genome Res. 19, 1117-1123 (2009).
-
(2009)
Genome Res
, vol.19
, pp. 1117-1123
-
-
Simpson, J.T.1
-
22
-
-
79951530130
-
Scaffolding pre-assembled contigs using SSPACE
-
Boetzer, M., Henkel, C. V., Jansen, H. J., Butler, D. & Pirovano, W. Scaffolding pre-assembled contigs using SSPACE. Bioinformatics 27, 578-579 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 578-579
-
-
Boetzer, M.1
Henkel, C.V.2
Jansen, H.J.3
Butler, D.4
Pirovano, W.5
-
23
-
-
79952592810
-
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
-
Marcais, G. & Kingsford, C. A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics 27, 764-770 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 764-770
-
-
Marcais, G.1
Kingsford, C.2
-
24
-
-
77952337288
-
De novo assembly of a 40Mb eukaryotic genome from short sequence reads: Sordaria macrospora a model organism for fungal morphogenesis
-
Nowrousian, M. et al. De novo assembly of a 40Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. PLoS Genet. 6, e1000891 (2010).
-
(2010)
PLoS Genet
, vol.6
-
-
Nowrousian, M.1
-
25
-
-
20244366844
-
The genome sequence of the rice blast fungus Magnaporthe grisea
-
DOI 10.1038/nature03449
-
Dean, R. A. et al. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434, 980-986 (2005). (Pubitemid 40586040)
-
(2005)
Nature
, vol.434
, Issue.7036
, pp. 980-986
-
-
Dean, R.A.1
Talbot, N.J.2
Ebbole, D.J.3
Farman, M.L.4
Mitchell, T.K.5
Orbach, M.J.6
Thon, M.7
Kulkarni, R.8
Xu, J.-R.9
Pan, H.10
Read, N.D.11
Lee, Y.-I.12
Carbone, I.13
Brown, D.14
Yeon, Y.O.15
Donofrio, N.16
Jun, S.J.17
Soanes, D.M.18
Djonovic, S.19
Kolomlots, E.20
Rehmeyer, C.21
Li, W.22
Harding, M.23
Kim, S.24
Lebrun, M.-H.25
Bohnert, H.26
Coughlan, S.27
Butler, J.28
Calvo, S.29
Ma, L.-J.30
Nicol, R.31
Purcell, S.32
Nusbaum, C.33
Galagan, J.E.34
Dirren, B.W.35
more..
-
26
-
-
78549280179
-
In silico reversal of repeat-induced point mutation (RIP) identifies the origins of repeat families and uncovers obscured duplicated genes
-
Hane, J. & Oliver, R. In silico reversal of repeat-induced point mutation (RIP) identifies the origins of repeat families and uncovers obscured duplicated genes. BMC Genomics 11, 655 (2010).
-
(2010)
BMC Genomics
, vol.11
, pp. 655
-
-
Hane, J.1
Oliver, R.2
-
27
-
-
26944471385
-
RNA silencing in fungi: Mechanisms and applications
-
DOI 10.1016/j.febslet.2005.08.016, PII S0014579305009956, RNAi: Mechanisms, Biology and Applications
-
Nakayashiki, H. RNA silencing in fungi: mechanisms and applications. FEBS Lett. 579, 5950-5957 (2005). (Pubitemid 41487107)
-
(2005)
FEBS Letters
, vol.579
, Issue.26
, pp. 5950-5957
-
-
Nakayashiki, H.1
-
28
-
-
34247601439
-
Dating divergences in the Fungal Tree of Life: Review and new analyses
-
Taylor, J. W. & Berbee, M. L. Dating divergences in the Fungal Tree of Life: review and new analyses. Mycologia 98, 838-849 (2006). (Pubitemid 46683208)
-
(2006)
Mycologia
, vol.98
, Issue.6
, pp. 838-849
-
-
Taylor, J.W.1
Berbee, M.L.2
-
29
-
-
78650122420
-
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
-
Spanu, P. D. et al. Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 330, 1543-1546 (2010).
-
(2010)
Science
, vol.330
, pp. 1543-1546
-
-
Spanu, P.D.1
-
30
-
-
0025804758
-
Domains in microbial β-1,4-glycanases: Sequence conservation, function, and enzyme families
-
Gilkes, N. R., Henrissat, B., Kilburn, D. G., Miller, R. C. & Warren, R. A. Domains in microbial beta-1, 4-glycanases: sequence conservation, function, and enzyme families. Microbiol. Mol. Biol. Rev. 55, 303-315 (1991). (Pubitemid 21895156)
-
(1991)
Microbiological Reviews
, vol.55
, Issue.2
, pp. 303-315
-
-
Gilkes, N.R.1
Henrissat, B.2
Kilburn, D.G.3
Miller Jr., R.C.4
Warren, R.A.J.5
-
31
-
-
53749087941
-
Magnificent seven: Roles of G proteincoupled receptors in extracellular sensing in fungi
-
Xue, C., Hsueh, Y. P. & Heitman, J. Magnificent seven: roles of G proteincoupled receptors in extracellular sensing in fungi. FEMS Microbiol. Rev. 32, 1010-1032 (2008).
-
(2008)
FEMS Microbiol. Rev
, vol.32
, pp. 1010-1032
-
-
Xue, C.1
Hsueh, Y.P.2
Heitman, J.3
-
32
-
-
0033213017
-
Magnaporthe grisea Pth11p is a novel plasma membrane protein that mediates appressorium differentiation in response to inductive substrate cues
-
DeZwaan, T. M., Carroll, A. M., Valent, B. & Sweigard, J. A. Magnaporthe grisea Pth11p is a novel plasma membrane protein that mediates appressorium differentiation in response to inductive substrate cues. Plant Cell 11, 2013-2030 (1999).
-
(1999)
Plant Cell
, vol.11
, pp. 2013-2030
-
-
Dezwaan, T.M.1
Carroll, A.M.2
Valent, B.3
Sweigard, J.A.4
-
33
-
-
0033967762
-
The G protein-coupled receptor Gpr1 is a nutrient sensor that regulates pseudohyphal differentiation in Saccharomyces cerevisiae
-
Lorenz, M. C. et al. The G protein-coupled receptor Gpr1 is a nutrient sensor that regulates pseudohyphal differentiation in Saccharomyces cerevisiae. Genetics 154, 609-622 (2000). (Pubitemid 30096584)
-
(2000)
Genetics
, vol.154
, Issue.2
, pp. 609-622
-
-
Lorenz, M.C.1
Pan, X.2
Harashima, T.3
Cardenas, M.E.4
Xue, Y.5
Hirsch, J.P.6
Heitman, J.7
-
34
-
-
79851472311
-
Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. Acridum
-
Gao, Q. et al. Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum. PLoS Genet. 7, e1001264 (2011).
-
(2011)
PLoS Genet
, vol.7
-
-
Gao, Q.1
-
35
-
-
84874772540
-
Plant-symbiotic fungi as chemical engineers: Multi-genome analysis of the Clavicipitaceae reveals dynamics of alkaloid loci
-
Schardl, C. L. et al. Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the Clavicipitaceae reveals dynamics of alkaloid loci. PLoS Genet. 9, e1003323 (2013).
-
(2013)
PLoS Genet
, vol.9
-
-
Schardl, C.L.1
-
36
-
-
84863034400
-
Unveiling the biosynthetic puzzle of destruxins in Metarhizium species
-
Wang, B., Kang, Q., Lu, Y., Bai, L. & Wang, C. Unveiling the biosynthetic puzzle of destruxins in Metarhizium species. Proc. Natl Acad. Sci. USA 109, 1287-1292 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 1287-1292
-
-
Wang, B.1
Kang, Q.2
Lu, Y.3
Bai, L.4
Wang, C.5
-
37
-
-
33746523463
-
The biosynthetic pathway for aurofusarin in Fusarium graminearum reveals a close link between the naphthoquinones and naphthopyrones
-
DOI 10.1111/j.1365-2958.2006.05295.x
-
Frandsen, R. J. et al. The biosynthetic pathway for aurofusarin in Fusarium graminearum reveals a close link between the naphthoquinones and naphthopyrones. Mol. Microbiol. 61, 1069-1080 (2006). (Pubitemid 44134182)
-
(2006)
Molecular Microbiology
, vol.61
, Issue.4
, pp. 1069-1080
-
-
Frandsen, R.J.N.1
Nielsen, N.J.2
Maolanon, N.3
Sorensen, J.C.4
Olsson, S.5
Nielsen, J.6
Giese, H.7
-
38
-
-
79960927037
-
Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana
-
Kemen, E. et al. Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana. PLoS Biol. 9, e1001094 (2011).
-
(2011)
PLoS Biol
, vol.9
-
-
Kemen, E.1
-
39
-
-
84859512402
-
The predicted secretome of the plant pathogenic fungus Fusarium graminearum: A refined comparative analysis
-
Brown, N. A., Antoniw, J. & Hammond-Kosack, K. E. The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis. PLoS ONE 7, e33731 (2012).
-
(2012)
PLoS ONE
, vol.7
-
-
Brown, N.A.1
Antoniw, J.2
Hammond-Kosack, K.E.3
-
40
-
-
33750597877
-
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
-
DOI 10.1038/nature05248, PII NATURE05248
-
Kamper, J. et al. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 444, 97-101 (2006). (Pubitemid 44684763)
-
(2006)
Nature
, vol.444
, Issue.7115
, pp. 97-101
-
-
Kamper, J.1
Kahmann, R.2
Bolker, M.3
Ma, L.-J.4
Brefort, T.5
Saville, B.J.6
Banuett, F.7
Kronstad, J.W.8
Gold, S.E.9
Muller, O.10
Perlin, M.H.11
Wosten, H.A.B.12
De Vries, R.13
Ruiz-Herrera, J.14
Reynaga-Pena, C.G.15
Snetselaar, K.16
McCann, M.17
Perez-Martin, J.18
Feldbrugge, M.19
Basse, C.W.20
Steinberg, G.21
Ibeas, J.I.22
Holloman, W.23
Guzman, P.24
Farman, M.25
Stajich, J.E.26
Sentandreu, R.27
Gonzalez-Prieto, J.M.28
Kennell, J.C.29
Molina, L.30
Schirawski, J.31
Mendoza-Mendoza, A.32
Greilinger, D.33
Munch, K.34
Rossel, N.35
Scherer, M.36
Vranes, M.37
Ladendorf, O.38
Vincon, V.39
Fuchs, U.40
Sandrock, B.41
Meng, S.42
Ho, E.C.H.43
Cahill, M.J.44
Boyce, K.J.45
Klose, J.46
Klosterman, S.J.47
Deelstra, H.J.48
Ortiz-Castellanos, L.49
Li, W.50
Sanchez-Alonso, P.51
Schreier, P.H.52
Hauser-Hahn, I.53
Vaupel, M.54
Koopmann, E.55
Friedrich, G.56
Voss, H.57
Schluter, T.58
Margolis, J.59
Platt, D.60
Swimmer, C.61
Gnirke, A.62
Chen, F.63
Vysotskaia, V.64
Mannhaupt, G.65
Guldener, U.66
Munsterkotter, M.67
Haase, D.68
Oesterheld, M.69
Mewes, H.-W.70
Mauceli, E.W.71
DeCaprio, D.72
Wade, C.M.73
Butler, J.74
Young, S.75
Jaffe, D.B.76
Calvo, S.77
Nusbaum, C.78
Galagan, J.79
Birren, B.W.80
more..
-
41
-
-
84866146363
-
Comparative analysis of the genomes of two field isolates of the rice blast fungus Magnaporthe oryzae
-
Xue, M. et al. Comparative analysis of the genomes of two field isolates of the rice blast fungus Magnaporthe oryzae. PLoS Genet. 8, e1002869 (2012).
-
(2012)
PLoS Genet
, vol.8
-
-
Xue, M.1
-
42
-
-
84887929250
-
Filamentous plant pathogen effectors in action
-
Giraldo, M. C. & Valent, B. Filamentous plant pathogen effectors in action. Nat. Rev. Microbiol. 11, 800-814 (2013).
-
(2013)
Nat. Rev. Microbiol
, vol.11
, pp. 800-814
-
-
Giraldo, M.C.1
Valent, B.2
-
43
-
-
84877702996
-
Deployment of the Burkholderia glumae type III secretion system as an efficient tool for translocating pathogen effectors to monocot cells
-
Sharma, S. et al. Deployment of the Burkholderia glumae type III secretion system as an efficient tool for translocating pathogen effectors to monocot cells. Plant J. 74, 701-712 (2013).
-
(2013)
Plant J
, vol.74
, pp. 701-712
-
-
Sharma, S.1
-
44
-
-
0029046008
-
A toxic protein produced in vitro by Hirsutella thompsonii
-
Mazet, I. & Vey, A. Hirsutellin A, a toxic protein produced in vitro by Hirsutella thompsonii. Microbiology 141, 1343-1348 (1995).
-
(1995)
Microbiology
, vol.141
, pp. 1343-1348
-
-
Mazet, I.1
Vey Hirsutellin A, A.2
-
45
-
-
0034708619
-
The SixA phospho-histidine phosphatase modulates the ArcB phosphorelay signal transduction in Escherichia coli
-
DOI 10.1016/S0014-5793(00)01303-X, PII S001457930001303X
-
Matsubara, M. & Mizuno, T. The SixA phospho-histidine phosphatase modulates the ArcB phosphorelay signal transduction in Escherichia coli. FEBS Lett. 470, 118-124 (2000). (Pubitemid 30151081)
-
(2000)
FEBS Letters
, vol.470
, Issue.2
, pp. 118-124
-
-
Matsubara, M.1
Mizuno, T.2
-
46
-
-
0029084897
-
DNA methylation associated with repeat-induced point mutation in Neurospora crassa
-
Singer, M. J., Marcotte, B. A. & Selker, E. U. DNA methylation associated with repeat-induced point mutation in Neurospora crassa. Mol. Cel. Biol. 15, 5586-5597 (1995).
-
(1995)
Mol. Cel. Biol
, vol.15
, pp. 5586-5597
-
-
Singer, M.J.1
Marcotte, B.A.2
Selker, E.U.3
-
47
-
-
34047104485
-
Phylogenetic evidence for an animal pathogen origin of ergot and the grass endophytes
-
DOI 10.1111/j.1365-294X.2007.03225.x
-
Spatafora, J. W., Sung, G. H., Sung, J. M., Hywel-Jones, N. L. & White, J. F. Phylogenetic evidence for an animal pathogen origin of ergot and the grass endophytes. Mol. Ecol. 16, 1701-1711 (2007). (Pubitemid 46525386)
-
(2007)
Molecular Ecology
, vol.16
, Issue.8
, pp. 1701-1711
-
-
Spatafora, J.W.1
Sung, G.-H.2
Sung, J.-M.3
Hywel-Jones, N.L.4
White Jr., J.F.5
-
48
-
-
80052319576
-
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea
-
Amselem, J. et al. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet. 7, e1002230 (2011).
-
(2011)
PLoS Genet
, vol.7
-
-
Amselem, J.1
-
49
-
-
0031888525
-
Major facilitator superfamily
-
Pao, S. S., Paulsen, I. T. & Saier, M. H. Major facilitator superfamily. Microbiol. Mol. Biol. Rev. 62, 1-34 (1998). (Pubitemid 28130794)
-
(1998)
Microbiology and Molecular Biology Reviews
, vol.62
, Issue.1
, pp. 1-34
-
-
Pao, S.S.1
Paulsen, I.T.2
Saier Jr., M.H.3
-
50
-
-
0001350747
-
Phytoalexin detoxification: Importance for pathogenicity and practical implications
-
VanEtten, H. D., Matthews, D. E. & Matthews, P. S. Phytoalexin detoxification: importance for pathogenicity and practical implications. Annu. Rev. Phytopathol. 27, 143-164 (1989).
-
(1989)
Annu. Rev. Phytopathol
, vol.27
, pp. 143-164
-
-
Vanetten, H.D.1
Matthews, D.E.2
Matthews, P.S.3
-
51
-
-
0002522330
-
Extraction of total cellular DNA from plants algae and fungi
-
Rogers, S. O. & Bendich, A. J. Extraction of total cellular DNA from plants, algae and fungi. Plant Mol. Biol. Manual D1, 1-8 (1994).
-
(1994)
Plant Mol. Biol. Manual
, vol.D1
, pp. 1-8
-
-
Rogers, S.O.1
Bendich, A.J.2
-
52
-
-
0021001395
-
Isolation of DNA from filamentous fungi and separation into nuclear, mitochondrial, ribosomal, and plasmid components
-
Garber, R. C. & Yoder, O. C. Isolation of DNA from filamentous fungi and separation into nuclear, mitochondrial, ribosomal, and plasmid components. Anal. Biochem. 135, 416-422 (1983).
-
(1983)
Anal. Biochem
, vol.135
, pp. 416-422
-
-
Garber, R.C.1
Yoder, O.C.2
-
53
-
-
55949133761
-
Sporulation, inoculation methods and pathogenicity of Ustilaginoidea albicans, the cause of white rice false smut in China
-
Wang, S. et al. Sporulation, inoculation methods and pathogenicity of Ustilaginoidea albicans, the cause of white rice false smut in China. J. Phytopathol. 156, 755-757 (2008).
-
(2008)
J. Phytopathol
, vol.156
, pp. 755-757
-
-
Wang, S.1
-
54
-
-
84942887758
-
SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler
-
Luo, R. et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1, 18 (2012).
-
(2012)
GigaScience
, vol.1
, pp. 18
-
-
Luo, R.1
-
55
-
-
2942544417
-
Gene finding in novel genomes
-
Korf, I. Gene finding in novel genomes. BMC Bioinformatics 5, 59 (2004).
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 59
-
-
Korf, I.1
-
56
-
-
3242889577
-
AUGUSTUS: A web server for gene finding in eukaryotes
-
DOI 10.1093/nar/gkh379
-
Stanke, M., Steinkamp, R., Waack, S. & Morgenstern, B. AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res. 32, W309-W312 (2004). (Pubitemid 38997349)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.WEB SERVER ISS.
-
-
Stanke, M.1
Steinkamp, R.2
Waack, S.3
Morgenstern, B.4
-
57
-
-
57149099395
-
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
-
Ter-Hovhannisyan, V., Lomsadze, A., Chernoff, Y. O. & Borodovsky, M. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 18, 1979-1990 (2008).
-
(2008)
Genome Res
, vol.18
, pp. 1979-1990
-
-
Ter-Hovhannisyan, V.1
Lomsadze, A.2
Chernoff, Y.O.3
Borodovsky, M.4
-
58
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
59
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
60
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 (1990).
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
61
-
-
2442713832
-
GeneWise and Genomewise
-
DOI 10.1101/gr.1865504
-
Birney, E., Clamp, M. & Durbin, R. Genewise and genomewise. Genome Res. 14, 988-995 (2004). (Pubitemid 38660520)
-
(2004)
Genome Research
, vol.14
, Issue.5
, pp. 988-995
-
-
Birney, E.1
Clamp, M.2
Durbin, R.3
-
62
-
-
42949086676
-
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
-
Haas, B. J. et al. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biol. 9, R7 (2008).
-
(2008)
Genome Biol
, vol.9
-
-
Haas, B.J.1
-
63
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
DOI 10.1093/bioinformatics/btm404
-
Larkin, M. A. et al. Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948 (2007). (Pubitemid 350162903)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
Mcgettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
64
-
-
33747835539
-
Computing Ka and Ks with a consideration of unequal transitional substitutions
-
Zhang, Z., Li, J. & Yu, J. Computing Ka and Ks with a consideration of unequal transitional substitutions. BMC Evol. Biol. 6, 44 (2006).
-
(2006)
BMC Evol. Biol
, vol.6
, pp. 44
-
-
Zhang, Z.1
Li, J.2
Yu, J.3
-
65
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
DOI 10.1038/nmeth.1226, PII NMETH.1226
-
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621-628 (2008). (Pubitemid 351911867)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
66
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
DOI 10.1214/aos/1013699998
-
Benjamini, Y. & Yekutieli, D. The control of the false discovery rate in multiple testing under dependency. Ann. Stat. 29, 1165-1188 (2001). (Pubitemid 33575263)
-
(2001)
Annals of Statistics
, vol.29
, Issue.4
, pp. 1165-1188
-
-
Benjamini, Y.1
Yekutieli, D.2
-
67
-
-
80053345905
-
SignalP 4.0: Discriminating signal peptides from transmembrane regions
-
Petersen, T. N., Brunak, S., von Heijne, G. & Nielsen, H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat. Methods 8, 785-786 (2011).
-
(2011)
Nat. Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
68
-
-
79960934898
-
Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens
-
Klosterman, S. J. et al. Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens. PLoS Pathog. 7, e1002137 (2011).
-
(2011)
PLoS Pathog
, vol.7
-
-
Klosterman, S.J.1
-
69
-
-
23744467266
-
Screening and genetic improvement of pectinolytic fungi for degumming of textile fibers
-
Molina, S. M., Pelissari, F. A. & Vitorello, C. Screening and genetic improvement of pectinolytic fungi for degumming of textile fibers. Bra. J. Microbiol. 32, 320-326 (2001).
-
(2001)
Bra. J. Microbiol
, vol.32
, pp. 320-326
-
-
Molina, S.M.1
Pelissari, F.A.2
Vitorello, C.3
-
70
-
-
81755163005
-
Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity
-
Fabro, G. et al. Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity. PLoS Pathog. 7, e1002348 (2011).
-
(2011)
PLoS Pathog
, vol.7
-
-
Fabro, G.1
|