Phylogenetic placement of the anamorphic tribe Ustilaginoideae (Hypocreales, Ascomycota)

Mycologia

Volumn 96, Issue 5, 2004, Pages 1088-1094

  Bischoff, J F ^a   Sullivan, R F ^a   Kjer, K M ^b   White Jr , J F ^a  

^a Rutgers University   (United States)

^b RUTGERS UNIVERSITY   (United States)

Author keywords

Ascomycetes; Clavicipitaceae; Hypocreales; Munkia; Neomunkia; Oryza; Rice; Ustilaginoidea

Indexed keywords

EVOLUTIONARY BIOLOGY; FUNGUS; GEOGRAPHICAL DISTRIBUTION; MORPHOLOGY; PHYLOGENETICS;

ASCOMYCOTA; CHUSQUEA; CLAVICIPITACEAE; FUNGI; HYPOCREACEAE; HYPOCREALES; MUNKIA; MYXOGASTRIA; NEOMUNKIA; ORYZA; POACEAE; USTILAGINOIDEA;

EID: 6044250264     PISSN: 00275514     EISSN: None     Source Type: Journal    
DOI: 10.1080/15572536.2005.11832907     Document Type: Article

References (18)

1. Akaike H. 1974. A new look at the statistical model identification. IEEE Transactions on Automatic Control 19:716-723.
2. Artjariyasripong S, Mitchell JI, Hywel-Jones NL, Gareth Jones EB. 2001. Relationship of genus Cordyceps and related genera, based on parsimony and spectral analysis of partial 18S and 28S ribosomal gene sequences. Mycoscience 42:503-517.
3. Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, Du Y, Feng B, Lin N, Madabusi LV, Muller KM, Pande N, Shang Z, Yu N, Gutell RR. 2002. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BioMed Central Bioinformatics 3:15.
4. Diehl WW. 1950. Balansia and the Balansieae in America. Washington, DC: United States Department of Agriculture.
5. Hashioka Y, Yoshino M, Yamamoto T. 1951. Physiology of the rice false smut, Ustilaginoidea virens (Cke.) Tak.. Res. Bull. Saitama Agric. Exp. Sta. 2:20.
6. Huelsenbeck JP. 2000. MrBayes: Bayesian inference of phylogeny. Distributed by the author. Department of Biology, University of Rochester.
7. _, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinfomatics 17:754-755.
8. Kjer KM. 1995. Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs. Molecular Phylogenetics and Evolution 4:314-330.
9. Kuldau GA, Liu JS, White JF Jr, Siegel MR, Schardl CL. 1997. Molecular systematics of Clavicipitaceae supporting monophyly of genus Epichloë and form genus Ephelis. Mycologia 89:431-441.
10. Möller A. 1901. Phycomyceten und Ascomyceten. Botanischen Mittheilungen aus den Tropen 9:1-319.
11. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
12. Rodríguez F, Oliver JF, Marín A, Medina JR. 1990. The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 142:485-501.
13. Rykard DM, Luttrell ES, and Bacon CW. 1984. Conidiogenesis and conidiomata in the Clavicipitales. Mycologia 76:1095-1103.
14. Spatafora JW, Blackwell M. 1993. Molecular systematics of unitunicate perithecial ascomycetes: the Clavicipitales-Hypocreales connection. Mycologia 85:912-922.
15. Sullivan S, Bergen MS, Patel R, Bills GF, Alderman SC, Spatafora JW, White JF Jr. 2001. Features and phylogenetic status of an enigmatic clavicipitalean fungus Neoclaviceps monostipa gen. et sp. nov. Mycologia 93:90-99.
16. Swofford DL. 2002. PAUP*. Phylogenetic analysis using parsimony (*and other methods), version 4.0b10 (Alvitec). Sunderland, Massachusetts: Sinauer Associates.
17. von Höhnel F. 1911. Akad. Der Wiss. Wien. Math. Nat. Kl. Sitzber. 120:391.
18. Wang S, Bai J. 1997. A new species of Ustilaginoidea: U. albicans. Mycosystema 16: 257-258.