-
1
-
-
34047271756
-
MeCP2 in Rett syndrome: Transcriptional repressor or chromatin architectural protein?
-
DOI 10.1016/j.gde.2007.02.003, PII S0959437X07000317, Chromosomes and Expression Mechanisms
-
Chadwick LH, Wade PA: MeCP2 in Rett syndrome: transcriptional repressor or chromatin architectural protein? Curr Opin Genet Dev 2007, 17:121-125. (Pubitemid 46551717)
-
(2007)
Current Opinion in Genetics and Development
, vol.17
, Issue.2
, pp. 121-125
-
-
Chadwick, L.H.1
Wade, P.A.2
-
5
-
-
0035849529
-
MeCP2 mutations in children with and without the phenotype of Rett syndrome
-
Hoffbuhr K, Devaney JM, LaFleur B, Sirianni N, Scacheri C, Giron J, Schuette J, Innis J, Marino M, Philippart M, Narayanan V, Umansky R, Kronn D, Hoffman EP, Naidu S: MeCP2 mutations in children with and without the phenotype of Rett syndrome. Neurology 2001, 56:1486-1495. (Pubitemid 32532260)
-
(2001)
Neurology
, vol.56
, Issue.11
, pp. 1486-1495
-
-
Hoffbuhr, K.1
Devaney, J.M.2
Lafleur, B.3
Sirianni, N.4
Scacheri, C.5
Giron, J.6
Schuette, J.7
Innis, J.8
Marino, M.9
Philippart, M.10
Narayanan, V.11
Umansky, R.12
Kronn, D.13
Hoffman, E.P.14
Naidu, S.15
-
6
-
-
34250849699
-
MECP2 coding sequence and 3′UTR variation in 172 unrelated autistic patients
-
DOI 10.1002/ajmg.b.30490
-
Coutinho AM, Oliveira G, Katz C, Feng J, Yan J, Yang C, Marques C, Ataide A, Miguel TS, Borges L, Almeida J, Correia C, Currais A, Bento C, Mota-Vieira L, Temudo T, Santos M, Maciel P, Sommer SS, Vicente AM: MECP2 coding sequence and 3′UTR variation in 172 unrelated autistic patients. Am J Med Genet B Neuropsychiatr Genet 2007, 144B:475-483. (Pubitemid 46983158)
-
(2007)
American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics
, vol.144
, Issue.4
, pp. 475-483
-
-
Coutinho, A.M.1
Oliveira, G.2
Katz, C.3
Feng, J.4
Yan, J.5
Yang, C.6
Marques, C.7
Ataide, A.8
Miguel, T.S.9
Borges, L.10
Almeida, J.11
Correia, C.12
Currais, A.13
Bento, C.14
Mota-Vieira, L.15
Temudo, T.16
Santos, M.17
Maciel, P.18
Sommer, S.S.19
Vicente, A.M.20
more..
-
8
-
-
67649833785
-
G-quadruplex nucleic acids as therapeutic targets
-
Balasubramanian S, Neidle S: G-quadruplex nucleic acids as therapeutic targets. Curr Opin Chem Biol 2009, 13:345-353.
-
(2009)
Curr Opin Chem Biol
, vol.13
, pp. 345-353
-
-
Balasubramanian, S.1
Neidle, S.2
-
9
-
-
38049030699
-
Human telomere, oncogenic promoter and 5′-UTR G-quadruplexes: Diverse higher order DNA and RNA targets for cancer therapeutics
-
Patel DJ, Phan AT, Kuryavyi V: Human telomere, oncogenic promoter and 5′-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics. Nucleic Acids Res 2007, 35:7429-7455.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7429-7455
-
-
Patel, D.J.1
Phan, A.T.2
Kuryavyi, V.3
-
10
-
-
77955791569
-
G-quadruplex nucleic acids and human disease
-
Wu Y, Brosh RM Jr: G-quadruplex nucleic acids and human disease. Febs J 2010, 277:3470-3488.
-
(2010)
Febs J
, vol.277
, pp. 3470-3488
-
-
Wu, Y.1
Brosh Jr., R.M.2
-
11
-
-
84055188686
-
Photoactivated cationic alkyl-substituted porphyrin binding to g4-RNA in the 5′-UTR of KRAS oncogene represses translation
-
Faudale M, Cogoi S, Xodo LE: Photoactivated cationic alkyl-substituted porphyrin binding to g4-RNA in the 5′-UTR of KRAS oncogene represses translation. Chem Commun (Camb) 2012, 48:874-876.
-
(2012)
Chem Commun (Camb)
, vol.48
, pp. 874-876
-
-
Faudale, M.1
Cogoi, S.2
Xodo, L.E.3
-
12
-
-
84878734714
-
Emerging trends in G-quadruplex biology - Role in epigenetic and evolutionary events
-
Baral A, Kumar P, Pathak R, Chowdhury S: Emerging trends in G-quadruplex biology - role in epigenetic and evolutionary events. Mol Biosyst 2013, 9(7):1568-1575.
-
(2013)
Mol Biosyst
, vol.9
, Issue.7
, pp. 1568-1575
-
-
Baral, A.1
Kumar, P.2
Pathak, R.3
Chowdhury, S.4
-
13
-
-
80054056280
-
Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide
-
Kumar P, Yadav VK, Baral A, Kumar P, Saha D, Chowdhury S: Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide. Nucleic Acids Res 2011, 39:8005-8016.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 8005-8016
-
-
Kumar, P.1
Yadav, V.K.2
Baral, A.3
Kumar, P.4
Saha, D.5
Chowdhury, S.6
-
14
-
-
77950966488
-
Allele drop-out in the MECP2 gene due to G-quadruplex and i-motif sequences when using polymerase chain reaction-based diagnosis for Rett syndrome
-
Saunders CJ, Friez MJ, Patterson M, Nzabi M, Zhao W, Bi C: Allele drop-out in the MECP2 gene due to G-quadruplex and i-motif sequences when using polymerase chain reaction-based diagnosis for Rett syndrome. Genet Test Mol Biomarkers 2010, 14:241-247.
-
(2010)
Genet Test Mol Biomarkers
, vol.14
, pp. 241-247
-
-
Saunders, C.J.1
Friez, M.J.2
Patterson, M.3
Nzabi, M.4
Zhao, W.5
Bi, C.6
-
15
-
-
84875464903
-
Quantitative visualization of DNA G-quadruplex structures in human cells
-
Biffi G, Tannahill D, McCafferty J, Balasubramanian S: Quantitative visualization of DNA G-quadruplex structures in human cells. Nat Chem 2013, 5:182-186.
-
(2013)
Nat Chem
, vol.5
, pp. 182-186
-
-
Biffi, G.1
Tannahill, D.2
McCafferty, J.3
Balasubramanian, S.4
-
16
-
-
34447541999
-
RNA quadruplex-based modulation of gene expression
-
DOI 10.1016/j.chembiol.2007.06.005, PII S1074552107002104
-
Wieland M, Hartig JS: RNA quadruplex-based modulation of gene expression. Chem Biol 2007, 14:757-763. (Pubitemid 47081424)
-
(2007)
Chemistry and Biology
, vol.14
, Issue.7
, pp. 757-763
-
-
Wieland, M.1
Hartig, J.S.2
-
17
-
-
13744249293
-
Kinetics of tetramolecular quadruplexes
-
DOI 10.1093/nar/gki148
-
Mergny JL, De Cian A, Ghelab A, Sacca B, Lacroix L: Kinetics of tetramolecular quadruplexes. Nucleic Acids Res 2005, 33:81-94. (Pubitemid 40276930)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.1
, pp. 81-94
-
-
Mergny, J.-L.1
De Cian, A.2
Ghelab, A.3
Sacca, B.4
Lacroix, L.5
-
18
-
-
84862229118
-
5′-UTR RNA G-quadruplexes: Translation regulation and targeting
-
Bugaut A, Balasubramanian S: 5′-UTR RNA G-quadruplexes: translation regulation and targeting. Nucleic Acids Res 2012, 40:4727-4741.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 4727-4741
-
-
Bugaut, A.1
Balasubramanian, S.2
-
19
-
-
0141925805
-
A single internal ribosome entry site containing a G quartet RNA structure drives fibroblast growth factor 2 gene expression at four alternative translation initiation codons
-
DOI 10.1074/jbc.M305580200
-
Bonnal S, Schaeffer C, Créancier L, Clamens S, Moine H, Prats AC, Vagner S: A single internal ribosome entry site containing a G quartet RNA structure drives fibroblast growth factor 2 gene expression at four alternative translation initiation codons. J Biol Chem 2003, 278:39330-39336. (Pubitemid 37248488)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.41
, pp. 39330-39336
-
-
Bonnal, S.1
Schaeffer, C.2
Creancier, L.3
Clamens, S.4
Moine, H.5
Prats, A.-C.6
Vagner, S.7
-
20
-
-
78650271083
-
An RNA Gquadruplex is essential for cap-independent translation initiation in human VEGF IRES
-
Morris MJ, Negishi Y, Pazsint C, Schonhoft JD, Basu S: An RNA Gquadruplex is essential for cap-independent translation initiation in human VEGF IRES. J Am Chem Soc 2010, 132:17831-17839.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 17831-17839
-
-
Morris, M.J.1
Negishi, Y.2
Pazsint, C.3
Schonhoft, J.D.4
Basu, S.5
-
21
-
-
33947310727
-
An RNA G-quadruplex in the 5′ UTR of the NRAS proto-oncogene modulates translation
-
DOI 10.1038/nchembio864, PII NCHEMBIO864
-
Kumari S, Bugaut A, Huppert JL, Balasubramanian S: An RNA G-quadruplex in the 5′ UTR of the NRAS proto-oncogene modulates translation. Nat Chem Biol 2007, 3:218-221. (Pubitemid 46440536)
-
(2007)
Nature Chemical Biology
, vol.3
, Issue.4
, pp. 218-221
-
-
Kumari, S.1
Bugaut, A.2
Huppert, J.L.3
Balasubramanian, S.4
-
22
-
-
84455173130
-
Translational repression of the disintegrin and metalloprotease ADAM10 by a stable G-quadruplex secondary structure in its 5′-untranslated region
-
Lammich S, Kamp F, Wagner J, Nuscher B, Zilow S, Ludwig AK, Willem M, Haass C: Translational repression of the disintegrin and metalloprotease ADAM10 by a stable G-quadruplex secondary structure in its 5′-untranslated region. J Biol Chem 2011, 286:45063-45072.
-
(2011)
J Biol Chem
, vol.286
, pp. 45063-45072
-
-
Lammich, S.1
Kamp, F.2
Wagner, J.3
Nuscher, B.4
Zilow, S.5
Ludwig, A.K.6
Willem, M.7
Haass, C.8
-
23
-
-
73349103817
-
Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes
-
Halder K, Wieland M, Hartig JS: Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes. Nucleic Acids Res 2009, 37:6811-6817.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 6811-6817
-
-
Halder, K.1
Wieland, M.2
Hartig, J.S.3
-
24
-
-
84880208141
-
Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor alpha
-
Endoh T, Kawasaki Y, Sugimoto N: Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor alpha. Nucleic Acids Res 2013, 41(12):6222-6231.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.12
, pp. 6222-6231
-
-
Endoh, T.1
Kawasaki, Y.2
Sugimoto, N.3
-
25
-
-
0037089136
-
Downstream sequence elements with different affinities for the hnRNP H/H′ protein influence the processing efficiency of mammalian polyadenylation signals
-
Arhin GK, Boots M, Bagga PS, Milcarek C, Wilusz J: Downstream sequence elements with different affinities for the hnRNP H/H' protein influence the processing efficiency of mammalian polyadenylation signals. Nucleic Acids Res 2002, 30:1842-1850. (Pubitemid 34679763)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.8
, pp. 1842-1850
-
-
Arhin, G.K.1
Boots, M.2
Bagga, P.S.3
Milcarek, C.4
Wilusz, J.5
-
27
-
-
79959923521
-
G-quadruplex RNA structure as a signal for neurite mRNA targeting
-
Subramanian M, Rage F, Tabet R, Flatter E, Mandel JL, Moine H: G-quadruplex RNA structure as a signal for neurite mRNA targeting. EMBO Rep 2011, 12:697-704.
-
(2011)
EMBO Rep
, vol.12
, pp. 697-704
-
-
Subramanian, M.1
Rage, F.2
Tabet, R.3
Flatter, E.4
Mandel, J.L.5
Moine, H.6
-
28
-
-
84857138146
-
DNA polymorphisms of the KiSS1 3′ untranslated region interfere with the folding of a G-rich sequence into G-quadruplex
-
Huijbregts L, Roze C, Bonafe G, Houang M, Le Bouc Y, Carel JC, Leger J, Alberti P, Roux N: DNA polymorphisms of the KiSS1 3′ untranslated region interfere with the folding of a G-rich sequence into G-quadruplex. Mol Cell Endocrinol 2012, 351:239-248.
-
(2012)
Mol Cell Endocrinol
, vol.351
, pp. 239-248
-
-
Huijbregts, L.1
Roze, C.2
Bonafe, G.3
Houang, M.4
Le Bouc, Y.5
Carel, J.C.6
Leger, J.7
Alberti, P.8
Roux, N.9
-
29
-
-
50849092487
-
The G-quartet containing FMRP binding site in FMR1 mRNA is a potent exonic splicing enhancer
-
Didiot MC, Tian Z, Schaeffer C, Subramanian M, Mandel JL, Moine H: The G-quartet containing FMRP binding site in FMR1 mRNA is a potent exonic splicing enhancer. Nucleic Acids Res 2008, 36:4902-4912.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4902-4912
-
-
Didiot, M.C.1
Tian, Z.2
Schaeffer, C.3
Subramanian, M.4
Mandel, J.L.5
Moine, H.6
-
30
-
-
84860518297
-
A G-rich element forms a G-quadruplex and regulates BACE1 mRNA alternative splicing
-
Fisette JF, Montagna DR, Mihailescu MR, Wolfe MS: A G-rich element forms a G-quadruplex and regulates BACE1 mRNA alternative splicing. J Neurochem 2012, 121:763-773.
-
(2012)
J Neurochem
, vol.121
, pp. 763-773
-
-
Fisette, J.F.1
Montagna, D.R.2
Mihailescu, M.R.3
Wolfe, M.S.4
-
31
-
-
33747860882
-
QGRS Mapper: A web-based server for predicting G-quadruplexes in nucleotide sequences
-
DOI 10.1093/nar/gkl253
-
Kikin O, D'Antonio L, Bagga PS: QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences. Nucleic Acids Res 2006, 34:W676-W682. (Pubitemid 44529856)
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Kikin, O.1
D'Antonio, L.2
Bagga, P.S.3
-
32
-
-
38549087401
-
GRSDB2 and GRS-UTRdb: Databases of quadruplex forming G-rich sequences in pre-mRNAs and mRNAs
-
DOI 10.1093/nar/gkm982
-
Kikin O, Zappala Z, D'Antonio L, Bagga PS: GRSDB2 and GRS-UTRdb: databases of quadruplex forming G-rich sequences in pre-mRNAs and mRNAs. Nucleic Acids Res 2008, 36:D141-D148. (Pubitemid 351149711)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Kikin, O.1
Zappala, Z.2
D'Antonio, L.3
Bagga, P.S.4
-
33
-
-
20144364292
-
Prevalence of quadruplexes in the human genome
-
DOI 10.1093/nar/gki609
-
Huppert JL, Balasubramanian S: Prevalence of quadruplexes in the human genome. Nucleic Acids Res 2005, 33:2908-2916. (Pubitemid 41511230)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.9
, pp. 2908-2916
-
-
Huppert, J.L.1
Balasubramanian, S.2
-
34
-
-
35448996964
-
Bioinformatics approaches to quadruplex sequence location
-
DOI 10.1016/j.ymeth.2007.08.004, PII S1046202307001399
-
Todd AK: Bioinformatics approaches to quadruplex sequence location. Methods 2007, 43:246-251. (Pubitemid 47633212)
-
(2007)
Methods
, vol.43
, Issue.4
, pp. 246-251
-
-
Todd, A.K.1
-
35
-
-
47649101029
-
Hunting G-quadruplexes
-
Huppert JL: Hunting G-quadruplexes. Biochimie 2008, 90:1140-1148.
-
(2008)
Biochimie
, vol.90
, pp. 1140-1148
-
-
Huppert, J.L.1
-
36
-
-
77955834769
-
Structure, location and interactions of G-quadruplexes
-
Huppert JL: Structure, location and interactions of G-quadruplexes. FEBS J 2010, 277:3452-3458.
-
(2010)
FEBS J
, vol.277
, pp. 3452-3458
-
-
Huppert, J.L.1
-
37
-
-
56049121180
-
G-quadruplexes: The beginning and end of UTRs
-
Huppert JL, Bugaut A, Kumari S, Balasubramanian S: G-quadruplexes: the beginning and end of UTRs. Nucleic Acids Res 2008, 36:6260-6268.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6260-6268
-
-
Huppert, J.L.1
Bugaut, A.2
Kumari, S.3
Balasubramanian, S.4
-
38
-
-
58249084043
-
Small but influential: The role of microRNAs on gene regulatory network and 3′UTR evolution
-
Zhang R, Su B: Small but influential: the role of microRNAs on gene regulatory network and 3′UTR evolution. J Genet Genomics 2009, 36:1-6.
-
(2009)
J Genet Genomics
, vol.36
, pp. 1-6
-
-
Zhang, R.1
Su, B.2
-
39
-
-
77955490797
-
MiR-212 is downregulated and suppresses methyl-CpG-binding protein MeCP2 in human gastric cancer
-
Wada R, Akiyama Y, Hashimoto Y, Fukamachi H, Yuasa Y: miR-212 is downregulated and suppresses methyl-CpG-binding protein MeCP2 in human gastric cancer. Int J Cancer 2010, 127:1106-1114.
-
(2010)
Int J Cancer
, vol.127
, pp. 1106-1114
-
-
Wada, R.1
Akiyama, Y.2
Hashimoto, Y.3
Fukamachi, H.4
Yuasa, Y.5
-
40
-
-
12144251356
-
The AU-rich transcriptome: More than interferons and cytokines, and its role in disease
-
Khabar KS: The AU-rich transcriptome: more than interferons and cytokines, and its role in disease. J Interferon Cytokine Res 2005, 25:1-10. (Pubitemid 40105586)
-
(2005)
Journal of Interferon and Cytokine Research
, vol.25
, Issue.1
, pp. 1-10
-
-
Khabar, K.S.A.1
-
41
-
-
84863116846
-
Yin Yang 1 contains G-quadruplex structures in its promoter and 5′-UTR and its expression is modulated by G4 resolvase 1
-
Huang W, Smaldino PJ, Zhang Q, Miller LD, Cao P, Stadelman K, Wan M, Giri B, Lei M, Nagamine Y, Vaughn JP, Akman SA, Sui G: Yin Yang 1 contains G-quadruplex structures in its promoter and 5′-UTR and its expression is modulated by G4 resolvase 1. Nucleic Acids Res 2011, 40(3):1033-1049.
-
(2011)
Nucleic Acids Res
, vol.40
, Issue.3
, pp. 1033-1049
-
-
Huang, W.1
Smaldino, P.J.2
Zhang, Q.3
Miller, L.D.4
Cao, P.5
Stadelman, K.6
Wan, M.7
Giri, B.8
Lei, M.9
Nagamine, Y.10
Vaughn, J.P.11
Akman, S.A.12
Sui, G.13
-
42
-
-
33745241820
-
Lost in translation: Translational interference from a recurrent mutation in exon 1 of MECP2
-
DOI 10.1136/jmg.2005.036244
-
Saxena A, de Lagarde D, Leonard H, Williamson SL, Vasudevan V, Christodoulou J, Thompson E, MacLeod P, Ravine D: Lost in translation: translational interference from a recurrent mutation in exon 1 of MECP2. J Med Genet 2006, 43:470-477. (Pubitemid 43927320)
-
(2006)
Journal of Medical Genetics
, vol.43
, Issue.6
, pp. 470-477
-
-
Saxena, A.1
De Lagarde, D.2
Leonard, H.3
Williamson, S.L.4
Vasudevan, V.5
Christodoulou, J.6
Thompson, E.7
MacLeod, P.8
Ravine, D.9
-
43
-
-
80455168361
-
Enhanced translation by nucleolin via G-rich elements in coding and non-coding regions of target mRNAs
-
Abdelmohsen K, Tominaga K, Lee EK, Srikantan S, Kang MJ, Kim MM, Selimyan R, Martindale JL, Yang X, Carrier F, Zhan M, Becker KG, Gorospe M: Enhanced translation by nucleolin via G-rich elements in coding and non-coding regions of target mRNAs. Nucleic Acids Res 2011, 39:8513-8530.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 8513-8530
-
-
Abdelmohsen, K.1
Tominaga, K.2
Lee, E.K.3
Srikantan, S.4
Kang, M.J.5
Kim, M.M.6
Selimyan, R.7
Martindale, J.L.8
Yang, X.9
Carrier, F.10
Zhan, M.11
Becker, K.G.12
Gorospe, M.13
-
44
-
-
0035900649
-
Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function
-
DOI 10.1016/S0092-8674(01)00566-9
-
Darnell JC, Jensen KB, Jin P, Brown V, Warren ST, Darnell RB: Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell 2001, 107:489-499. (Pubitemid 33152784)
-
(2001)
Cell
, vol.107
, Issue.4
, pp. 489-499
-
-
Darnell, J.C.1
Jensen, K.B.2
Jin, P.3
Brown, V.4
Warren, S.T.5
Darnell, R.B.6
-
45
-
-
0346656871
-
Developmentally-programmed FMRP expression in oligodendrocytes: A potential role of FMRP in regulating translation in oligodendroglia progenitors
-
DOI 10.1093/hmg/ddh009
-
Wang H, Ku L, Osterhout DJ, Li W, Ahmadian A, Liang Z, Feng Y: Developmentally-programmed FMRP expression in oligodendrocytes: a potential role of FMRP in regulating translation in oligodendroglia progenitors. Hum Mol Genet 2004, 13:79-89. (Pubitemid 38072137)
-
(2004)
Human Molecular Genetics
, vol.13
, Issue.1
, pp. 79-89
-
-
Wang, H.1
Ku, L.2
Osterhout, D.J.3
Li, W.4
Ahmadian, A.5
Liang, Z.6
Feng, Y.7
-
46
-
-
34547731978
-
Genome-wide expression profiling of lymphoblastoid cell lines distinguishes different forms of autism and reveals shared pathways
-
DOI 10.1093/hmg/ddm116
-
Nishimura Y, Martin CL, Vazquez-Lopez A, Spence SJ, Alvarez-Retuerto AI, Sigman M, Steindler C, Pellegrini S, Schanen NC, Warren ST, Geschwind DH: Genome-wide expression profiling of lymphoblastoid cell lines distinguishes different forms of autism and reveals shared pathways. Hum Mol Genet 2007, 16:1682-1698. (Pubitemid 47241828)
-
(2007)
Human Molecular Genetics
, vol.16
, Issue.14
, pp. 1682-1698
-
-
Nishimura, Y.1
Martin, C.L.2
Vazquez-Lopez, A.3
Spence, S.J.4
Alvarez-Retuerto, A.I.5
Sigman, M.6
Steindler, C.7
Pellegrini, S.8
Schanen, N.C.9
Warren, S.T.10
Geschwind, D.H.11
-
47
-
-
0035018021
-
G-quadruplex DNA structures-variations on a theme
-
Simonsson T: G-quadruplex DNA structures-variations on a theme. Biol Chem 2001, 382:621-628.
-
(2001)
Biol Chem
, vol.382
, pp. 621-628
-
-
Simonsson, T.1
-
48
-
-
0032776138
-
A complex pattern of evolutionary conservation and alternative polyadenylation within the long 3′-untranslated region of the methyl-CpG-binding protein 2 gene (MeCP2) suggests a regulatory role in gene expression
-
DOI 10.1093/hmg/8.7.1253
-
Coy JF, Sedlacek Z, Bachner D, Delius H, Poustka A: A complex pattern of evolutionary conservation and alternative polyadenylation within the long 3′-untranslated region of the methyl-CpG-binding protein 2 gene (MeCP2) suggests a regulatory role in gene expression. Hum Mol Genet 1999, 8:1253-1262. (Pubitemid 29328994)
-
(1999)
Human Molecular Genetics
, vol.8
, Issue.7
, pp. 1253-1262
-
-
Coy, J.F.1
Sedlacek, Z.2
Bachner, D.3
Delius, H.4
Poustka, A.5
-
49
-
-
0032404113
-
DSEF-1 is a member of the hnRNP H family of RNA-binding proteins and stimulates pre-mRNA cleavage and polyadenylation in vitro
-
Bagga PS, Arhin GK, Wilusz J: DSEF-1 is a member of the hnRNP H family of RNA-binding proteins and stimulates pre-mRNA cleavage and polyadenylation in vitro. Nucleic Acids Res 1998, 26:5343-5350. (Pubitemid 28542733)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.23
, pp. 5343-5350
-
-
Bagga, P.S.1
Arhin, G.K.2
Wilusz, J.3
-
50
-
-
69149109034
-
A physical and functional link between splicing factors promotes pre-mRNA 3′ end processing
-
Millevoi S, Decorsière A, Loulergue C, Iacovoni J, Bernat S, Antoniou M, Vagner S: A physical and functional link between splicing factors promotes pre-mRNA 3′ end processing. Nucleic Acids Res 2009, 37:4672-4683.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 4672-4683
-
-
Millevoi, S.1
Decorsière, A.2
Loulergue, C.3
Iacovoni, J.4
Bernat, S.5
Antoniou, M.6
Vagner, S.7
-
51
-
-
79551595610
-
Essential role for the interaction between hnRNP H/F and a G quadruplex in maintaining p53 pre-mRNA 3′-end processing and function during DNA damage
-
Decorsière A, Cayrel A, Vagner S, Millevoi S: Essential role for the interaction between hnRNP H/F and a G quadruplex in maintaining p53 pre-mRNA 3′-end processing and function during DNA damage. Genes Dev 2011, 25:220-225.
-
(2011)
Genes Dev
, vol.25
, pp. 220-225
-
-
Decorsière, A.1
Cayrel, A.2
Vagner, S.3
Millevoi, S.4
-
52
-
-
85046916288
-
Alternative polyadenylation of MeCP2: Influence of cis-acting elements and transacting factors
-
Newnham CM, Hall-Pogar T, Liang S, Wu J, Tian B, Hu J, Lutz CS: Alternative polyadenylation of MeCP2: influence of cis-acting elements and transacting factors. RNA Biol 2010, 7:361-372.
-
(2010)
RNA Biol
, vol.7
, pp. 361-372
-
-
Newnham, C.M.1
Hall-Pogar, T.2
Liang, S.3
Wu, J.4
Tian, B.5
Hu, J.6
Lutz, C.S.7
-
53
-
-
78049439594
-
Role of the amino terminal RHAU-specific motif in the recognition and resolution of guanine quadruplex-RNA by the DEAH-box RNA helicase RHAU
-
Lattmann S, Giri B, Vaughn JP, Akman SA, Nagamine Y: Role of the amino terminal RHAU-specific motif in the recognition and resolution of guanine quadruplex-RNA by the DEAH-box RNA helicase RHAU. Nucleic Acids Res 2010, 38:6219-6233.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 6219-6233
-
-
Lattmann, S.1
Giri, B.2
Vaughn, J.P.3
Akman, S.A.4
Nagamine, Y.5
-
54
-
-
0029052435
-
The G-rich auxiliary downstream element has distinct sequence and position requirements and mediates efficient 3′ end pre-mRNA processing through a trans-acting factor
-
Bagga PS, Ford LP, Chen F, Wilusz J: The G-rich auxiliary downstream element has distinct sequence and position requirements and mediates efficient 3′ end pre-mRNA processing through a trans-acting factor. Nucleic Acids Res 1995, 23:1625-1631.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1625-1631
-
-
Bagga, P.S.1
Ford, L.P.2
Chen, F.3
Wilusz, J.4
-
55
-
-
0035145592
-
HnRNP F influences binding of a 64-kilodalton subunit of cleavage stimulation factor to mRNA precursors in mouse B cells
-
DOI 10.1128/MCB.21.4.1228-1238.2001
-
Veraldi KL, Arhin GK, Martincic K, Chung-Ganster LH, Wilusz J, Milcarek C: hnRNP F influences binding of a 64-kilodalton subunit of cleavage stimulation factor to mRNA precursors in mouse B cells. Mol Cell Biol 2001, 21:1228-1238. (Pubitemid 32114971)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.4
, pp. 1228-1238
-
-
Veraldi, K.L.1
Arhin, G.K.2
Martincic, K.3
Chung-Ganster, L.-H.4
Wilusz, J.5
Milcarek, C.6
-
56
-
-
84874895206
-
Human-specific regulation of MeCP2 levels in fetal brains by microRNA miR-483-5p
-
Han K, Gennarino VA, Lee Y, Pang K, Hashimoto-Torii K, Choufani S, Raju CS, Oldham MC, Weksberg R, Rakic P, Liu Z, Zoghbi HY: Human-specific regulation of MeCP2 levels in fetal brains by microRNA miR-483-5p. Genes Dev 2013, 27:485-490.
-
(2013)
Genes Dev
, vol.27
, pp. 485-490
-
-
Han, K.1
Gennarino, V.A.2
Lee, Y.3
Pang, K.4
Hashimoto-Torii, K.5
Choufani, S.6
Raju, C.S.7
Oldham, M.C.8
Weksberg, R.9
Rakic, P.10
Liu, Z.11
Zoghbi, H.Y.12
-
57
-
-
70350157060
-
MiRNPs: Versatile regulators of gene expression in vertebrate cells
-
Steitz JA, Vasudevan S: miRNPs: versatile regulators of gene expression in vertebrate cells. Biochem Soc Trans 2009, 37:931-935.
-
(2009)
Biochem Soc Trans
, vol.37
, pp. 931-935
-
-
Steitz, J.A.1
Vasudevan, S.2
-
58
-
-
18544370404
-
Functional cloning of BRF1, a regulator of ARE-dependent mRNA turnover
-
DOI 10.1093/emboj/cdf444
-
Stoecklin G, Colombi M, Raineri I, Leuenberger S, Mallaun M, Schmidlin M, Gross B, Lu M, Kitamura T, Moroni C: Functional cloning of BRF1, a regulator of ARE-dependent mRNA turnover. Embo J 2002, 21:4709-4718. (Pubitemid 34984358)
-
(2002)
EMBO Journal
, vol.21
, Issue.17
, pp. 4709-4718
-
-
Stoecklin, G.1
Colombi, M.2
Raineri, I.3
Leuenberger, S.4
Mallaun, M.5
Schmidlin, M.6
Gross, B.7
Lu, M.8
Kitamura, T.9
Moroni, C.10
-
59
-
-
0032526417
-
RNA stabilization by the AU-rich element binding protein, HuR, an ELAV protein
-
DOI 10.1093/emboj/17.12.3461
-
Peng SS, Chen CY, Xu N, Shyu AB: RNA stabilization by the AU-rich element binding protein, HuR, an ELAV protein. Embo J 1998, 17:3461-3470. (Pubitemid 28279518)
-
(1998)
EMBO Journal
, vol.17
, Issue.12
, pp. 3461-3470
-
-
Peng, S.S.-Y.1
Chen, C.-Y.A.2
Xu, N.3
Shyu, A.-B.4
-
60
-
-
84872574757
-
Bioinformatics methods for studying microRNA and ARE mediated regulation of post-transcriptional gene expression
-
Bindra RS, Wang JTL, Bagga PS: Bioinformatics methods for studying microRNA and ARE mediated regulation of post-transcriptional gene expression. Int J Knowl Discov Bioinform 2010, 1:97-112.
-
(2010)
Int J Knowl Discov Bioinform
, vol.1
, pp. 97-112
-
-
Bindra, R.S.1
Wang, J.T.L.2
Bagga, P.S.3
-
61
-
-
42449120163
-
Decoding ARE-mediated decay: Is microRNA part of the equation?
-
DOI 10.1083/jcb.200712054
-
von Roretz C, Gallouzi IE: Decoding ARE-mediated decay: is microRNA part of the equation? J Cell Biol 2008, 181:189-194. (Pubitemid 351574545)
-
(2008)
Journal of Cell Biology
, vol.181
, Issue.2
, pp. 189-194
-
-
Von Roretz, C.1
Gallouzi, I.-E.2
-
62
-
-
0032953308
-
HnRNP H is a component of a splicing enhancer complex that activates a c-src alternative exon in neuronal cells
-
Chou MY, Rooke N, Turck CW, Black DL: hnRNP H is a component of a splicing enhancer complex that activates a c-src alternative exon in neuronal cells. Mol Cell Biol 1999, 19:69-77. (Pubitemid 29018410)
-
(1999)
Molecular and Cellular Biology
, vol.19
, Issue.1
, pp. 69-77
-
-
Chou, M.-Y.1
Rooke, N.2
Turck, C.W.3
Black, D.L.4
-
63
-
-
79952299200
-
G-quadruplex structures in TP53 intron 3: Role in alternative splicing and in production of p53 mRNA isoforms
-
Marcel V, Tran PL, Sagne C, Martel-Planche G, Vaslin L, Teulade-Fichou MP, Hall J, Mergny JL, Hainaut P, Van Dyck E: G-quadruplex structures in TP53 intron 3: role in alternative splicing and in production of p53 mRNA isoforms. Carcinogenesis 2011, 32:271-278.
-
(2011)
Carcinogenesis
, vol.32
, pp. 271-278
-
-
Marcel, V.1
Tran, P.L.2
Sagne, C.3
Martel-Planche, G.4
Vaslin, L.5
Teulade-Fichou, M.P.6
Hall, J.7
Mergny, J.L.8
Hainaut, P.9
Van Dyck, E.10
-
64
-
-
84876532610
-
Database resources of the national center for biotechnology information
-
Acland AAR, Barrett T, Beck J, Benson DA, Bollin C, Bolton E, Bryant SH, Canese K, Church DM, Clark K, DiCuccio M, Dondoshansky I, Federhen S, Feolo M, Geer LY, Gorelenkov V, Hoeppner M, Johnson M, Kelly C, Khotomlianski V, Kimchi A, Kimelman M, Kitts P, Krasnov S, Kuznetsov A, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, et al: Database resources of the national center for biotechnology information. Nucleic Acids Res 2013, 41:D8-D20.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Acland, A.A.R.1
Barrett, T.2
Beck, J.3
Benson, D.A.4
Bollin, C.5
Bolton, E.6
Bryant, S.H.7
Canese, K.8
Church, D.M.9
Clark, K.10
Dicuccio, M.11
Dondoshansky, I.12
Federhen, S.13
Feolo, M.14
Geer, L.Y.15
Gorelenkov, V.16
Hoeppner, M.17
Johnson, M.18
Kelly, C.19
Khotomlianski, V.20
Kimchi, A.21
Kimelman, M.22
Kitts, P.23
Krasnov, S.24
Kuznetsov, A.25
Landsman, D.26
Lipman, D.J.27
Lu, Z.28
Madden, T.L.29
Madej, T.30
more..
-
65
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy
-
Pruitt KD, Tatusova T, Brown GR, Maglott DR: NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res 2012, 40:D130-D135.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
67
-
-
0020484488
-
An improved algorithm for matching biological sequences
-
Gotoh O: An improved algorithm for matching biological sequences. J Mol Biol 1982, 162:705-708.
-
(1982)
J Mol Biol
, vol.162
, pp. 705-708
-
-
Gotoh, O.1
-
69
-
-
14044270766
-
Computational methods for predicting intramolecular G-quadruplexes in nucleotide sequences
-
D'Antonio L, Bagga PS: Computational methods for predicting intramolecular G-quadruplexes in nucleotide sequences. Comput Syst Bioinform, IEEE: CSB 2004, 2004:561-562.
-
(2004)
Comput Syst Bioinform, IEEE: CSB
, vol.2004
, pp. 561-562
-
-
D'Antonio, L.1
Bagga, P.S.2
-
70
-
-
23344443944
-
Unfolding of DNA quadruplexes induced by HIV-1 nucleocapsid protein
-
DOI 10.1093/nar/gki741
-
Kankia BI, Barany G, Musier-Forsyth K: Unfolding of DNA quadruplexes induced by HIV-1 nucleocapsid protein. Nucleic Acids Res 2005, 33:4395-4403. (Pubitemid 41222554)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.14
, pp. 4395-4403
-
-
Kankia, B.I.1
Barany, G.2
Musier-Forsyth, K.3
-
71
-
-
0037335613
-
Downstream elements of mammalian pre-mRNA polyadenylation signals: Primary, secondary and higher-order structures
-
DOI 10.1093/nar/gkg241
-
Zarudnaya MI, Kolomiets IM, Potyahaylo AL, Hovorun DM: Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures. Nucleic Acids Res 2003, 31:1375-1386. (Pubitemid 36304898)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.5
, pp. 1375-1386
-
-
Zarudnaya, M.I.1
Kolomiets, I.M.2
Potyahaylo, A.L.3
Hovorun, D.M.4
-
72
-
-
33846059244
-
PolyA-DB 2: MRNA polyadenylation sites in vertebrate genes
-
DOI 10.1093/nar/gkl870
-
Lee JY, Yeh I, Park JY, Tian B: PolyA-DB 2: mRNA polyadenylation sites in vertebrate genes. Nucleic Acids Res 2007, 35:D165-D168. (Pubitemid 46056191)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Lee, J.Y.1
Yeh, I.2
Park, J.Y.3
Tian, B.4
-
73
-
-
38549113982
-
ARED Organism: Expansion of ARED reveals AU-rich element cluster variations between human and mouse
-
DOI 10.1093/nar/gkm959
-
Halees AS, El-Badrawi R, Khabar KS: ARED Organism: expansion of ARED reveals AU-rich element cluster variations between human and mouse. Nucleic Acids Res 2008, 36:D137-D140. (Pubitemid 351149710)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Halees, A.S.1
El-Badrawi, R.2
Khabar, K.S.A.3
-
75
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
DOI 10.1016/j.cell.2004.12.035, PII S0092867404012607
-
Lewis BP, Burge CB, Bartel DP: Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120:15-20. (Pubitemid 40094598)
-
(2005)
Cell
, vol.120
, Issue.1
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
76
-
-
34250805982
-
MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing
-
DOI 10.1016/j.molcel.2007.06.017, PII S1097276507004078
-
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP: MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 2007, 27:91-105. (Pubitemid 46991392)
-
(2007)
Molecular Cell
, vol.27
, Issue.1
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.-H.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
Bartel, D.P.6
|