-
1
-
-
34249079154
-
Network motifs: Theory and experimental approaches
-
Alon U. Network motifs: Theory and experimental approaches. Nat. Rev. Genet. 8 (2007) 450-461
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 450-461
-
-
Alon, U.1
-
2
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D., Villen J., Shin C., Camargo F.D., Gygi S.P., and Bartel D.P. The impact of microRNAs on protein output. Nature 455 (2008) 64-71
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villen, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
Bartel, D.P.6
-
3
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi A.L., and Oltvai Z.N. Network biology: Understanding the cell's functional organization. Nat. Rev. Genet. 5 (2004) 101-113
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
4
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel D.P. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116 (2004) 281-297
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
5
-
-
25144525014
-
Core transcriptional regulatory circuitry in human embryonic stem cells
-
Boyer L.A., Lee T.I., Cole M.F., Johnstone S.E., Levine S.S., Zucker J.P., Guenther M.G., Kumar R.M., Murray H.L., Jenner R.G., Gifford D.K., Melton D.A., Jaenisch R., and Young R.A. Core transcriptional regulatory circuitry in human embryonic stem cells. Cell 122 (2005) 947-956
-
(2005)
Cell
, vol.122
, pp. 947-956
-
-
Boyer, L.A.1
Lee, T.I.2
Cole, M.F.3
Johnstone, S.E.4
Levine, S.S.5
Zucker, J.P.6
Guenther, M.G.7
Kumar, R.M.8
Murray, H.L.9
Jenner, R.G.10
Gifford, D.K.11
Melton, D.A.12
Jaenisch, R.13
Young, R.A.14
-
7
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
Brodersen P., Sakvarelidze-Achard L., Bruun-Rasmussen M., Dunoyer P., Yamamoto Y.Y., Sieburth L., and Voinnet O. Widespread translational inhibition by plant miRNAs and siRNAs. Science 320 (2008) 1185-1190
-
(2008)
Science
, vol.320
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Sieburth, L.6
Voinnet, O.7
-
8
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
Chen X., Xu H., Yuan P., Fang F., Huss M., Vega V.B., Wong E., Orlov Y.L., Zhang W., Jiang J., Loh Y.H., Yeo H.C., Yeo Z.X., Narang V., Govindarajan K.R., Leong B., Shahab A., Ruan Y., Bourque G., Sung W.K., Clarke N.D., Wei C.L., and Ng H.H. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133 (2008) 1106-1117
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
Vega, V.B.6
Wong, E.7
Orlov, Y.L.8
Zhang, W.9
Jiang, J.10
Loh, Y.H.11
Yeo, H.C.12
Yeo, Z.X.13
Narang, V.14
Govindarajan, K.R.15
Leong, B.16
Shahab, A.17
Ruan, Y.18
Bourque, G.19
Sung, W.K.20
Clarke, N.D.21
Wei, C.L.22
Ng, H.H.23
more..
-
9
-
-
33846045953
-
Principles of microRNA regulation of a human cellular signaling network
-
Cui Q., Yu Z., Purisima E.O., and Wang E. Principles of microRNA regulation of a human cellular signaling network. Mol. Syst. Biol. 2 (2006) 46
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 46
-
-
Cui, Q.1
Yu, Z.2
Purisima, E.O.3
Wang, E.4
-
10
-
-
33645294070
-
Oncomirs - microRNAs with a role in cancer
-
Esquela-Kerscher A., and Slack F.J. Oncomirs - microRNAs with a role in cancer. Nat. Rev. Cancer 6 (2006) 259-269
-
(2006)
Nat. Rev. Cancer
, vol.6
, pp. 259-269
-
-
Esquela-Kerscher, A.1
Slack, F.J.2
-
11
-
-
29144505309
-
The widespread impact of mammalian microRNAs on mRNA repression and evolution
-
Farh K.K.-H., Grimson A., Jan C., Lewis B.P., Johnston W.K., Lim L.P., Burge C.B., and Bartel D.P. The widespread impact of mammalian microRNAs on mRNA repression and evolution. Science 310 (2005) 1817-1821
-
(2005)
Science
, vol.310
, pp. 1817-1821
-
-
Farh, K.K.-H.1
Grimson, A.2
Jan, C.3
Lewis, B.P.4
Johnston, W.K.5
Lim, L.P.6
Burge, C.B.7
Bartel, D.P.8
-
12
-
-
33645124258
-
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
-
Giraldez A.J., Mishima Y., Rihel J., Grocock R.J., Van Dongen S., Inoue K., Enright A.J., and Schier A.F. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 312 (2006) 75-79
-
(2006)
Science
, vol.312
, pp. 75-79
-
-
Giraldez, A.J.1
Mishima, Y.2
Rihel, J.3
Grocock, R.J.4
Van Dongen, S.5
Inoue, K.6
Enright, A.J.7
Schier, A.F.8
-
13
-
-
3042767202
-
MicroRNAs: Small RNAs with a big role in gene regulation
-
He L., and Hannon G.J. MicroRNAs: Small RNAs with a big role in gene regulation. Nat. Rev. Genet. 5 (2004) 522-531
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
14
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis B.P., Burge C.B., and Bartel D.P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120 (2005) 15-20
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
15
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim L.P., Lau N.C., Garrett-Engele P., Grimson A., Schelter J.M., Castle J., Bartel D.P., Linsley P.S., and Johnson J.M. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433 (2005) 769-773
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
Castle, J.6
Bartel, D.P.7
Linsley, P.S.8
Johnson, J.M.9
-
16
-
-
52949125268
-
Mir-302 reprograms human skin cancer cells into a pluripotent ES-cell-like state
-
Lin S.L., Chang D.C., Chang-Lin S., Lin C.H., Wu D.T., Chen D.T., and Ying S.Y. Mir-302 reprograms human skin cancer cells into a pluripotent ES-cell-like state. RNA 14 (2008) 2115-2124
-
(2008)
RNA
, vol.14
, pp. 2115-2124
-
-
Lin, S.L.1
Chang, D.C.2
Chang-Lin, S.3
Lin, C.H.4
Wu, D.T.5
Chen, D.T.6
Ying, S.Y.7
-
17
-
-
33645381936
-
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
-
Loh Y.H., Wu Q., Chew J.L., Vega V.B., Zhang W., Chen X., Bourque G., George J., Leong B., Liu J., Wong K.Y., Sung K.W., Lee C.W., Zhao X.D., Chiu K.P., Lipovich L., Kuznetsov V.A., Robson P., Stanton L.W., Wei C.L., Ruan Y., Lim B., and Ng H.H. The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. Nat. Genet. 38 (2006) 431-440
-
(2006)
Nat. Genet.
, vol.38
, pp. 431-440
-
-
Loh, Y.H.1
Wu, Q.2
Chew, J.L.3
Vega, V.B.4
Zhang, W.5
Chen, X.6
Bourque, G.7
George, J.8
Leong, B.9
Liu, J.10
Wong, K.Y.11
Sung, K.W.12
Lee, C.W.13
Zhao, X.D.14
Chiu, K.P.15
Lipovich, L.16
Kuznetsov, V.A.17
Robson, P.18
Stanton, L.W.19
Wei, C.L.20
Ruan, Y.21
Lim, B.22
Ng, H.H.23
more..
-
18
-
-
48249150513
-
Adaptive evolution of newly emerged micro-RNA genes in Drosophila
-
Lu J., Fu Y., Kumar S., Shen Y., Zeng K., Xu A., Carthew R., and Wu C.I. Adaptive evolution of newly emerged micro-RNA genes in Drosophila. Mol. Biol. Evol. 25 (2008) 929-938
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 929-938
-
-
Lu, J.1
Fu, Y.2
Kumar, S.3
Shen, Y.4
Zeng, K.5
Xu, A.6
Carthew, R.7
Wu, C.I.8
-
19
-
-
48449084118
-
Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells
-
Marson A., Levine S.S., Cole M.F., Frampton G.M., Brambrink T., Johnstone S., Guenther M.G., Johnston W.K., Wernig M., Newman J., Calabrese J.M., Dennis L.M., Volkert T.L., Gupta S., Love J., Hannett N., Sharp P.A., Bartel D.P., Jaenisch R., and Young R.A. Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 134 (2008) 521-533
-
(2008)
Cell
, vol.134
, pp. 521-533
-
-
Marson, A.1
Levine, S.S.2
Cole, M.F.3
Frampton, G.M.4
Brambrink, T.5
Johnstone, S.6
Guenther, M.G.7
Johnston, W.K.8
Wernig, M.9
Newman, J.10
Calabrese, J.M.11
Dennis, L.M.12
Volkert, T.L.13
Gupta, S.14
Love, J.15
Hannett, N.16
Sharp, P.A.17
Bartel, D.P.18
Jaenisch, R.19
Young, R.A.20
more..
-
20
-
-
20444479428
-
c-Myc-regulated microRNAs modulate E2F1 expression
-
O'Donnell K.A., Wentzel E.A., Zeller K.I., Dang C.V., and Mendell J.T. c-Myc-regulated microRNAs modulate E2F1 expression. Nature 435 (2005) 839-843
-
(2005)
Nature
, vol.435
, pp. 839-843
-
-
O'Donnell, K.A.1
Wentzel, E.A.2
Zeller, K.I.3
Dang, C.V.4
Mendell, J.T.5
-
21
-
-
43449090367
-
MicroRNA-10a binds the 5′UTR of ribosomal protein mRNAs and enhances their translation
-
Orom U.A., Nielsen F.C., and Lund A.H. MicroRNA-10a binds the 5′UTR of ribosomal protein mRNAs and enhances their translation. Mol. Cell 30 (2008) 460-471
-
(2008)
Mol. Cell
, vol.30
, pp. 460-471
-
-
Orom, U.A.1
Nielsen, F.C.2
Lund, A.H.3
-
22
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades M.W., Reinhart B.J., Lim L.P., Burge C.B., Bartel B., and Bartel D.P. Prediction of plant microRNA targets. Cell 110 (2002) 513-520
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
Bartel, D.P.6
-
23
-
-
0037417817
-
Modular organization of cellular networks
-
Rives A.W., and Galitski T. Modular organization of cellular networks. Proc. Natl. Acad. Sci. USA 100 (2003) 1128-1133
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 1128-1133
-
-
Rives, A.W.1
Galitski, T.2
-
24
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M., Schwanhausser B., Thierfelder N., Fang Z., Khanin R., and Rajewsky N. Widespread changes in protein synthesis induced by microRNAs. Nature 455 (2008) 58-63
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
Rajewsky, N.6
-
25
-
-
34547555796
-
Global and local architecture of the mammalian microRNA-transcription factor regulatory network
-
Shalgi R., Lieber D., Oren M., and Pilpel Y. Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PLoS Comput. Biol. 3 (2007) e131
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Shalgi, R.1
Lieber, D.2
Oren, M.3
Pilpel, Y.4
-
26
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
Shen-Orr S.S., Milo R., Mangan S., and Alon U. Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet. 31 (2002) 64-68
-
(2002)
Nat. Genet.
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
27
-
-
33644499134
-
Cell-type-specific signatures of microRNAs on target mRNA expression
-
Sood P., Krek A., Zavolan M., Macino G., and Rajewsky N. Cell-type-specific signatures of microRNAs on target mRNA expression. Proc. Natl. Acad. Sci. USA 103 (2006) 2746-2751
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 2746-2751
-
-
Sood, P.1
Krek, A.2
Zavolan, M.3
Macino, G.4
Rajewsky, N.5
-
28
-
-
28944439309
-
Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution
-
Stark A., Brennecke J., Bushati N., Russell R.B., and Cohen S.M. Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution. Cell 123 (2005) 1133-1146
-
(2005)
Cell
, vol.123
, pp. 1133-1146
-
-
Stark, A.1
Brennecke, J.2
Bushati, N.3
Russell, R.B.4
Cohen, S.M.5
-
29
-
-
33747185122
-
Nonrestrictive developmental regulation of microRNA gene expression
-
Strauss W.M., Chen C., Lee C.T., and Ridzon D. Nonrestrictive developmental regulation of microRNA gene expression. Mamm. Genome 17 (2006) 833-840
-
(2006)
Mamm. Genome
, vol.17
, pp. 833-840
-
-
Strauss, W.M.1
Chen, C.2
Lee, C.T.3
Ridzon, D.4
-
30
-
-
2942534403
-
Human embryonic stem cells express a unique set of microRNAs
-
Suh M.R., Lee Y., Kim J.Y., Kim S.K., Moon S.H., Lee J.Y., Cha K.Y., Chung H.M., Yoon H.S., Moon S.Y., Kim V.N., and Kim K.S. Human embryonic stem cells express a unique set of microRNAs. Dev. Biol. 270 (2004) 488-498
-
(2004)
Dev. Biol.
, vol.270
, pp. 488-498
-
-
Suh, M.R.1
Lee, Y.2
Kim, J.Y.3
Kim, S.K.4
Moon, S.H.5
Lee, J.Y.6
Cha, K.Y.7
Chung, H.M.8
Yoon, H.S.9
Moon, S.Y.10
Kim, V.N.11
Kim, K.S.12
-
31
-
-
34249819336
-
MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals
-
Tsang J., Zhu J., and van Oudenaarden A. MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. Mol. Cell 26 (2007) 753-767
-
(2007)
Mol. Cell
, vol.26
, pp. 753-767
-
-
Tsang, J.1
Zhu, J.2
van Oudenaarden, A.3
-
32
-
-
36749026906
-
Switching from repression to activation: MicroRNAs can up-regulate translation
-
Vasudevan S., Tong Y., and Steitz J.A. Switching from repression to activation: MicroRNAs can up-regulate translation. Science 318 (2007) 1931-1934
-
(2007)
Science
, vol.318
, pp. 1931-1934
-
-
Vasudevan, S.1
Tong, Y.2
Steitz, J.A.3
-
34
-
-
2142654329
-
MicroRNA-directed cleavage of HOXB8 mRNA
-
Yekta S., Shih I.H., and Bartel D.P. MicroRNA-directed cleavage of HOXB8 mRNA. Science 304 (2004) 594-596
-
(2004)
Science
, vol.304
, pp. 594-596
-
-
Yekta, S.1
Shih, I.H.2
Bartel, D.P.3
-
35
-
-
49249114176
-
MicroRNA regulation and the variability of human cortical gene expression
-
Zhang R., and Su B. MicroRNA regulation and the variability of human cortical gene expression. Nucleic Acids Res. 36 (2008) 4621-4628
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4621-4628
-
-
Zhang, R.1
Su, B.2
-
36
-
-
34248196026
-
Rapid evolution of an X-linked microRNA cluster in primates
-
Zhang R., Peng Y., Wang W., and Su B. Rapid evolution of an X-linked microRNA cluster in primates. Genome Res. 17 (2007) 612-617
-
(2007)
Genome Res.
, vol.17
, pp. 612-617
-
-
Zhang, R.1
Peng, Y.2
Wang, W.3
Su, B.4
-
37
-
-
45849126048
-
Molecular evolution of a primate-specific microRNA family
-
Zhang R., Wang Y.Q., and Su B. Molecular evolution of a primate-specific microRNA family. Mol. Biol. Evol. 25 (2008) 1493-1502
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1493-1502
-
-
Zhang, R.1
Wang, Y.Q.2
Su, B.3
-
39
-
-
38349138548
-
Inter- and intra-combinatorial regulation by transcription factors and microRNAs
-
Zhou Y., Ferguson J., Chang J.T., and Kluger Y. Inter- and intra-combinatorial regulation by transcription factors and microRNAs. BMC Genomics 8 (2007) 396
-
(2007)
BMC Genomics
, vol.8
, pp. 396
-
-
Zhou, Y.1
Ferguson, J.2
Chang, J.T.3
Kluger, Y.4
-
40
-
-
34247623628
-
Getting connected: Analysis and principles of biological networks
-
Zhu X., Gerstein M., and Snyder M. Getting connected: Analysis and principles of biological networks. Genes Dev. 21 (2007) 1010-1024
-
(2007)
Genes Dev.
, vol.21
, pp. 1010-1024
-
-
Zhu, X.1
Gerstein, M.2
Snyder, M.3
|