Large scale in-silico identification and characterization of simple sequence repeats (SSRs) from de novo assembled transcriptome of Catharanthus roseus (L.) G. Don

Plant Cell Reports

Volumn 33, Issue 6, 2014, Pages 905-918

  Kumar, Santosh ^a   Shah, Niraj ^a   Garg, Vanika ^a   Bhatia, Sabhyata ^a  

^a NATIONAL INSTITUTE OF PLANT GENOME RESEARCH   (India)

Author keywords

C. roseus (Catharanthus roseus); de novo assembly; ESTscan; Genic SSRs; Illumina short read sequence; Transcriptome

Indexed keywords

GENETIC MARKER; MICROSATELLITE DNA; PRIMER DNA; TRANSCRIPTOME;

CATHARANTHUS; CLUSTER ANALYSIS; EXPRESSED SEQUENCE TAG; GENE EXPRESSION REGULATION; GENE LIBRARY; GENE ONTOLOGY; GENETIC DATABASE; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; HIGH THROUGHPUT SEQUENCING; MOLECULAR GENETICS; NUCLEOTIDE MOTIF; NUCLEOTIDE SEQUENCE; SEEDLING; SEQUENCE ANALYSIS; SPECIES DIFFERENCE;

BASE SEQUENCE; CATHARANTHUS; CLUSTER ANALYSIS; DATABASES, GENETIC; DNA PRIMERS; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION REGULATION, PLANT; GENE LIBRARY; GENE ONTOLOGY; GENETIC MARKERS; GENETIC VARIATION; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE ANNOTATION; MOLECULAR SEQUENCE DATA; NUCLEOTIDE MOTIFS; SEEDLING; SEQUENCE ANALYSIS, RNA; SPECIES SPECIFICITY; TRANSCRIPTOME;

EID: 84900874090     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-014-1569-8     Document Type: Article

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