-
1
-
-
11244281311
-
The 'evolvability' of promiscuous protein functions
-
doi: 10.1038/ng1482
-
Aharoni, A., Gaidukov, L., Khersonsky, O., McQ, G. S., Roodveldt, C., and Tawfik, D. S. (2005). The 'evolvability' of promiscuous protein functions. Nat. Genet. 37, 73-76. doi: 10.1038/ng1482
-
(2005)
Nat. Genet.
, vol.37
, pp. 73-76
-
-
Aharoni, A.1
Gaidukov, L.2
Khersonsky, O.3
McQ, G.S.4
Roodveldt, C.5
Tawfik, D.S.6
-
2
-
-
79956222409
-
Polyamine metabolic canalization in response to drought stress in Arabidopsis and the resurrection plant Craterostigma plantagineum
-
doi: 10.4161/psb.6.2.14317
-
Alcazar, R., Bitrian, M., Bartels, D., Koncz, C., Altabella, T., and Tiburcio, A. F. (2011). Polyamine metabolic canalization in response to drought stress in Arabidopsis and the resurrection plant Craterostigma plantagineum. Plant Signal. Behav. 6, 243-250. doi: 10.4161/psb.6.2.14317
-
(2011)
Plant Signal. Behav.
, vol.6
, pp. 243-250
-
-
Alcazar, R.1
Bitrian, M.2
Bartels, D.3
Koncz, C.4
Altabella, T.5
Tiburcio, A.F.6
-
3
-
-
0032493349
-
Jasmonate-induced responses are costly but benefit plants under attack in native populations
-
doi: 10.1073/pnas.95.14.8113
-
Baldwin, I. T. (1998). Jasmonate-induced responses are costly but benefit plants under attack in native populations. Proc. Natl. Acad. Sci. U.S.A. 95, 8113-8118. doi: 10.1073/pnas.95.14.8113
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 8113-8118
-
-
Baldwin, I.T.1
-
4
-
-
0028906425
-
The chemistry of defense: Theory and practice
-
doi: 10.1073/pnas.92.1.2
-
Berenbaum, M. R. (1995). The chemistry of defense: theory and practice. Proc. Natl. Acad. Sci. U.S.A. 92, 2-8. doi: 10.1073/pnas.92.1.2
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 2-8
-
-
Berenbaum, M.R.1
-
5
-
-
0033954256
-
The protein data bank
-
doi: 10.1093/nar/28.1.235
-
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., et al. (2000). The protein data bank. Nucleic Acids Res. 28, 235-242. doi: 10.1093/nar/28.1.235
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
-
6
-
-
70350729438
-
Putrescine N-methyltransferase-the start for alkaloids
-
doi: 10.1016/j.phytochem.2009.06.012
-
Biastoff, S., Brandt, W., and Draeger, B. (2009a). Putrescine N-methyltransferase-the start for alkaloids. Phytochemistry 70, 1708-1718. doi: 10.1016/j.phytochem.2009.06.012
-
(2009)
Phytochemistry
, vol.70
, pp. 1708-1718
-
-
Biastoff, S.1
Brandt, W.2
Draeger, B.3
-
7
-
-
70349883921
-
Evolution of putrescine N-methyltransferase from spermidine synthase demanded alterations in substrate binding
-
doi: 10.1016/j.febslet.2009.09.043
-
Biastoff, S., Reinhardt, N., Reva, V., Brandt, W., and Drager, B. (2009b). Evolution of putrescine N-methyltransferase from spermidine synthase demanded alterations in substrate binding. FEBS Lett. 583, 3367-3374. doi: 10.1016/j.febslet.2009.09.043
-
(2009)
FEBS Lett.
, vol.583
, pp. 3367-3374
-
-
Biastoff, S.1
Reinhardt, N.2
Reva, V.3
Brandt, W.4
Drager, B.5
-
8
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
doi: 10.1016/0003-2697(76)90527-3
-
Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254. doi: 10.1016/0003-2697(76)90527-3
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
9
-
-
33748085361
-
Brassicaceae contain nortropane alkaloids
-
doi: 10.1016/j.phytochem.2006.06.024
-
Brock, A., Herzfeld, T., Paschke, R., Koch, M., and Drager, B. (2006). Brassicaceae contain nortropane alkaloids. Phytochemistry 67, 2050-2057. doi: 10.1016/j.phytochem.2006.06.024
-
(2006)
Phytochemistry
, vol.67
, pp. 2050-2057
-
-
Brock, A.1
Herzfeld, T.2
Paschke, R.3
Koch, M.4
Drager, B.5
-
10
-
-
78649529379
-
Crystal structures of NodS N-methyltransferase from Bradyrhizobium japonicum in ligand-free form and as SAH complex
-
doi: 10.1016/j.jmb.2010.10.016
-
Cakici, O., Sikorski, M., Stepkowski, T., Bujacz, G., and Jaskolski, M. (2010). Crystal structures of NodS N-methyltransferase from Bradyrhizobium japonicum in ligand-free form and as SAH complex. J. Mol. Biol. 404, 874-889. doi: 10.1016/j.jmb.2010.10.016
-
(2010)
J. Mol. Biol.
, vol.404
, pp. 874-889
-
-
Cakici, O.1
Sikorski, M.2
Stepkowski, T.3
Bujacz, G.4
Jaskolski, M.5
-
11
-
-
33644877685
-
The PMDB protein model database
-
doi: 10.1093/nar/gkj105
-
Castrignano, T., De Meo, P. D., Cozzetto, D., Talamo, I. G., and Tramontano, A. (2006). The PMDB protein model database. Nucleic Acids Res. 34, D306-D309. doi: 10.1093/nar/gkj105
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Castrignano, T.1
De Meo, P.D.2
Cozzetto, D.3
Talamo, I.G.4
Tramontano, A.5
-
12
-
-
0242663237
-
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
-
doi: 10.1002/jcc.10349
-
Duan, Y., Wu, C., Chowdhury, S., Lee, M. C., Xiong, G., Zhang, W., et al. (2003). A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J. Comput. Chem. 24, 1999-2012. doi: 10.1002/jcc.10349
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1999-2012
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
Lee, M.C.4
Xiong, G.5
Zhang, W.6
-
13
-
-
34548587312
-
Crystal structure of Plasmodium falciparum spermidine synthase in complex with the substrate decarboxylated S-adenosylmethionine and the potent inhibitors 4MCHA and AdoDATO
-
doi: 10.1016/j.jmb.2007.07.053
-
Dufe, V. T., Qiu, W., Muller, I. B., Hui, R., Walter, R. D., and Al Karadaghi, S. (2007). Crystal structure of Plasmodium falciparum spermidine synthase in complex with the substrate decarboxylated S-adenosylmethionine and the potent inhibitors 4MCHA and AdoDATO. J. Mol. Biol. 373, 167-177. doi: 10.1016/j.jmb.2007.07.053
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 167-177
-
-
Dufe, V.T.1
Qiu, W.2
Muller, I.B.3
Hui, R.4
Walter, R.D.5
Al Karadaghi, S.6
-
14
-
-
67650915748
-
Gene duplication and evolutionary novelty in plants
-
doi: 10.1111/j.1469-8137.2009.02923.x
-
Flagel, L. E., and Wendel, J. F. (2009). Gene duplication and evolutionary novelty in plants. New Phytol. 183, 557-564. doi: 10.1111/j.1469-8137.2009.02923.x
-
(2009)
New Phytol.
, vol.183
, pp. 557-564
-
-
Flagel, L.E.1
Wendel, J.F.2
-
15
-
-
0031881362
-
Molecular cloning of plant spermidine synthases
-
doi: 10.1093/oxfordjournals.pcp.a029291
-
Hashimoto, T., Tamaki, K., Suzuki, K., and Yamada, Y. (1998a). Molecular cloning of plant spermidine synthases. Plant Cell Physiol. 39, 73-79. doi: 10.1093/oxfordjournals.pcp.a029291
-
(1998)
Plant Cell Physiol.
, vol.39
, pp. 73-79
-
-
Hashimoto, T.1
Tamaki, K.2
Suzuki, K.3
Yamada, Y.4
-
16
-
-
0032080948
-
Intraspecific variability of the tandem repeats in Nicotiana putrescine N-methyltransferases
-
doi: 10.1023/A:1005961122814
-
Hashimoto, T., Shoji, T., Mihara, T., Oguri, H., Tamaki, K., Suzuki, K., et al. (1998b). Intraspecific variability of the tandem repeats in Nicotiana putrescine N-methyltransferases. Plant Mol. Biol. 37, 25-37. doi: 10.1023/A:1005961122814
-
(1998)
Plant Mol. Biol.
, vol.37
, pp. 25-37
-
-
Hashimoto, T.1
Shoji, T.2
Mihara, T.3
Oguri, H.4
Tamaki, K.5
Suzuki, K.6
-
17
-
-
25144443484
-
Structural basis for inhibition of histamine N-methyltransferase by diverse drugs
-
doi: 10.1016/j.jmb.2005.08.040
-
Horton, J. R., Sawada, K., Nishibori, M., and Cheng, X. (2005). Structural basis for inhibition of histamine N-methyltransferase by diverse drugs. J. Mol. Biol. 353, 334-344. doi: 10.1016/j.jmb.2005.08.040
-
(2005)
J. Mol. Biol.
, vol.353
, pp. 334-344
-
-
Horton, J.R.1
Sawada, K.2
Nishibori, M.3
Cheng, X.4
-
18
-
-
32944472945
-
Aminopropyltransferases: Function, structure and genetics
-
doi: 10.1093/jb/mvj019
-
Ikeguchi, Y., Bewley, M. C., and Pegg, A. E. (2006). Aminopropyltransferases: function, structure and genetics. J. Biochem. 139, 1-9. doi: 10.1093/jb/mvj019
-
(2006)
J. Biochem.
, vol.139
, pp. 1-9
-
-
Ikeguchi, Y.1
Bewley, M.C.2
Pegg, A.E.3
-
19
-
-
75549087305
-
The evolution of gene duplications: Classifying and distinguishing between models
-
doi: 10.1038/nrg2689
-
Innan, H., and Kondrashov, F. (2010). The evolution of gene duplications: classifying and distinguishing between models. Nat. Rev. Genet. 11, 97-108. doi: 10.1038/nrg2689
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 97-108
-
-
Innan, H.1
Kondrashov, F.2
-
20
-
-
77953623874
-
Enzyme promiscuity: A mechanistic and evolutionary perspective
-
doi: 10.1146/annurev-biochem-030409-143718
-
Khersonsky, O., and Tawfik, D. S. (2010). Enzyme promiscuity: a mechanistic and evolutionary perspective. Annu. Rev. Biochem. 79, 471-505. doi: 10.1146/annurev-biochem-030409-143718
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 471-505
-
-
Khersonsky, O.1
Tawfik, D.S.2
-
21
-
-
0036142291
-
The crystal structure of spermidine synthase with a multisubstrate adduct inhibitor
-
doi: 10.1038/nsb737
-
Korolev, S., Ikeguchi, Y., Skarina, T., Beasley, S., Arrowsmith, C., Edwards, A., et al. (2002). The crystal structure of spermidine synthase with a multisubstrate adduct inhibitor. Nat. Struct. Biol. 9, 27-31. doi: 10.1038/nsb737
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 27-31
-
-
Korolev, S.1
Ikeguchi, Y.2
Skarina, T.3
Beasley, S.4
Arrowsmith, C.5
Edwards, A.6
-
22
-
-
27844530636
-
Natural history of S-adenosylmethionine-binding proteins
-
doi: 10.1186/1472-6807-5-19
-
Kozbial, P. Z., and Mushegian, A. R. (2005). Natural history of S-adenosylmethionine-binding proteins. BMC Struct. Biol. 5:19. doi: 10.1186/1472-6807-5-19
-
(2005)
BMC Struct. Biol.
, vol.5
, pp. 19
-
-
Kozbial, P.Z.1
Mushegian, A.R.2
-
23
-
-
74249090260
-
Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8
-
doi: 10.1002/prot.22570
-
Krieger, E., Joo, K., Lee, J., Lee, J., Raman, S., Thompson, J., et al. (2009). Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: four approaches that performed well in CASP8. Proteins 77(Suppl. 9), 114-122. doi: 10.1002/prot.22570
-
(2009)
Proteins
, vol.77
, Issue.SUPPL. 9
, pp. 114-122
-
-
Krieger, E.1
Joo, K.2
Lee, J.3
Lee, J.4
Raman, S.5
Thompson, J.6
-
24
-
-
0037093644
-
Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field
-
doi: 10.1002/prot.10104
-
Krieger, E., Koraimann, G., and Vriend, G. (2002). Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field. Proteins 47, 393-402. doi: 10.1002/prot.10104
-
(2002)
Proteins
, vol.47
, pp. 393-402
-
-
Krieger, E.1
Koraimann, G.2
Vriend, G.3
-
25
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
doi: 10.1093/bioinformatics/btm404
-
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948. doi: 10.1093/bioinformatics/btm404
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
-
26
-
-
0000243829
-
Procheck-a program to check the stereochemical quality of protein structures
-
doi: 10.1107/S0021889892009944
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993). Procheck-a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291. doi: 10.1107/S0021889892009944
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
McArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
27
-
-
0008349462
-
Biosynthesis of shihunine in Dendrobium pierardii
-
doi: 10.1021/ja00436a042
-
Leete, E., and Bodem, G. B. (1976). Biosynthesis of shihunine in Dendrobium pierardii. J. Am. Chem. Soc. 98, 6321-6325. doi: 10.1021/ja00436a042
-
(1976)
J. Am. Chem. Soc.
, vol.98
, pp. 6321-6325
-
-
Leete, E.1
Bodem, G.B.2
-
28
-
-
34548387498
-
Ensemble refinement of protein crystal structures: Validation and application
-
doi: 10.1016/j.str.2007.06.019
-
Levin, E. J., Kondrashov, D. A., Wesenberg, G. E., and Phillips, G. N. Jr. (2007). Ensemble refinement of protein crystal structures: validation and application. Structure 15, 1040-1052. doi: 10.1016/j.str.2007.06.019
-
(2007)
Structure
, vol.15
, pp. 1040-1052
-
-
Levin, E.J.1
Kondrashov, D.A.2
Wesenberg, G.E.3
Phillips Jr., G.N.4
-
29
-
-
84979978581
-
The tropane alkaloids
-
in, ed A. Brossi (New York, NY: Academic press)
-
Lounasmaa, M., and Tamminen, T. (1993). "The tropane alkaloids, " in The Alkaloids, ed A. Brossi (New York, NY: Academic press), 1-114.
-
(1993)
The Alkaloids
, pp. 1-114
-
-
Lounasmaa, M.1
Tamminen, T.2
-
30
-
-
0037990593
-
Studies on Orchidaceae alkaloids III. The alkaloids in Dendrobium primulinumand Dendrobium chrysanthum
-
doi: 10.3891/acta.chem.scand.19-1607
-
Luening, B., and Leander, K. (1965). Studies on Orchidaceae alkaloids III. The alkaloids in Dendrobium primulinumand Dendrobium chrysanthum. Acta Chem. Scand. 19, 1607-1611. doi: 10.3891/acta.chem.scand.19-1607
-
(1965)
Acta Chem. Scand.
, vol.19
, pp. 1607-1611
-
-
Luening, B.1
Leander, K.2
-
31
-
-
0028965842
-
Rapid high-performance liquid chromatographic method for the quantitation of polyamines as their dansyl derivatives: Application to plant and animal tissues
-
doi: 10.1016/0378-4347(94)00586-T
-
Marce, M., Brown, D. S., Capell, T., Figueras, X., and Tiburcio, A. F. (1995). Rapid high-performance liquid chromatographic method for the quantitation of polyamines as their dansyl derivatives: application to plant and animal tissues. J. Chromatogr. B Biomed. Appl. 666, 329-335. doi: 10.1016/0378-4347(94)00586-T
-
(1995)
J. Chromatogr. B Biomed. Appl.
, vol.666
, pp. 329-335
-
-
Marce, M.1
Brown, D.S.2
Capell, T.3
Figueras, X.4
Tiburcio, A.F.5
-
32
-
-
34250630530
-
The structure of two N-methyltransferases from the caffeine biosynthetic pathway
-
doi: 10.1104/pp.106.094854
-
McCarthy, A. A., and McCarthy, J. G. (2007). The structure of two N-methyltransferases from the caffeine biosynthetic pathway. Plant Physiol. 144, 879-889. doi: 10.1104/pp.106.094854
-
(2007)
Plant Physiol.
, vol.144
, pp. 879-889
-
-
McCarthy, A.A.1
McCarthy, J.G.2
-
33
-
-
52449127981
-
Evolutionary diversification in polyamine biosynthesis
-
doi: 10.1093/molbev/msn161
-
Minguet, E. G., Vera-Sirera, F., Marina, A., Carbonell, J., and Blazquez, M. A. (2008). Evolutionary diversification in polyamine biosynthesis. Mol. Biol. Evol. 25, 2119-2128. doi: 10.1093/molbev/msn161
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 2119-2128
-
-
Minguet, E.G.1
Vera-Sirera, F.2
Marina, A.3
Carbonell, J.4
Blazquez, M.A.5
-
34
-
-
0027365821
-
Cocaine as a naturally occurring insecticide
-
doi: 10.1073/pnas.90.20.9645
-
Nathanson, J. A., Hunnicutt, E. J., Kantham, L., and Scavone, C. (1993). Cocaine as a naturally occurring insecticide. Proc. Natl. Acad. Sci. U.S.A. 90, 9645-9648. doi: 10.1073/pnas.90.20.9645
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 9645-9648
-
-
Nathanson, J.A.1
Hunnicutt, E.J.2
Kantham, L.3
Scavone, C.4
-
35
-
-
77955935755
-
Gene duplications and the time thereafter-examples from plant secondary metabolism
-
Ober, D. (2010). Gene duplications and the time thereafter-examples from plant secondary metabolism. Plant Biol. (Stuttg.) 12, 570-577.
-
(2010)
Plant Biol. (Stuttg.)
, vol.12
, pp. 570-577
-
-
Ober, D.1
-
37
-
-
80052428125
-
Structural basis of substrate recognition in human nicotinamide N-methyltransferase
-
doi: 10.1021/bi2007614
-
Peng, Y., Sartini, D., Pozzi, V., Wilk, D., Emanuelli, M., and Yee, V. C. (2011). Structural basis of substrate recognition in human nicotinamide N-methyltransferase. Biochemistry 50, 7800-7808. doi: 10.1021/bi2007614
-
(2011)
Biochemistry
, vol.50
, pp. 7800-7808
-
-
Peng, Y.1
Sartini, D.2
Pozzi, V.3
Wilk, D.4
Emanuelli, M.5
Yee, V.C.6
-
38
-
-
0000647003
-
Die Struktur des mesembrins und Mesembrenins
-
doi: 10.1007/BF00602769
-
Popelak, A., Lettenbauer, G., Haack, E., and Spingler, H. (1960). Die Struktur des mesembrins und Mesembrenins. Naturwissenschaften 47, 231-232. doi: 10.1007/BF00602769
-
(1960)
Naturwissenschaften
, vol.47
, pp. 231-232
-
-
Popelak, A.1
Lettenbauer, G.2
Haack, E.3
Spingler, H.4
-
39
-
-
0033911844
-
Evolutionary ecology of the tropane alkaloids of Datura stramonium L. (Solanaceae)
-
Shonle, I., and Bergelson, J. (2000). Evolutionary ecology of the tropane alkaloids of Datura stramonium L. (Solanaceae). Evolution 54, 778-788.
-
(2000)
Evolution
, vol.54
, pp. 778-788
-
-
Shonle, I.1
Bergelson, J.2
-
40
-
-
0025341310
-
Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins
-
doi: 10.1016/S0022-2836(05)80269-4
-
Sippl, M. J. (1990). Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins. J. Mol. Biol. 213, 859-883. doi: 10.1016/S0022-2836(05)80269-4
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 859-883
-
-
Sippl, M.J.1
-
41
-
-
0027490731
-
Recognition of errors in three-dimensional structures of proteins
-
doi: 10.1002/prot.340170404
-
Sippl, M. J. (1993). Recognition of errors in three-dimensional structures of proteins. Proteins 17, 355-362. doi: 10.1002/prot.340170404
-
(1993)
Proteins
, vol.17
, pp. 355-362
-
-
Sippl, M.J.1
-
42
-
-
0001920296
-
Separation and quantitation of polyamines in plant tissue by high performance liquid chromatography of their dansyl derivatives
-
doi: 10.1104/pp.78.1.89
-
Smith, M. A., and Davies, P. J. (1985). Separation and quantitation of polyamines in plant tissue by high performance liquid chromatography of their dansyl derivatives. Plant Physiol. 78, 89-91. doi: 10.1104/pp.78.1.89
-
(1985)
Plant Physiol.
, vol.78
, pp. 89-91
-
-
Smith, M.A.1
Davies, P.J.2
-
43
-
-
29444432259
-
Putrescine N-methyltransferase in Solanum tuberosum L., a calystegine-forming plant
-
doi: 10.1007/s00425-005-0077-z
-
Stenzel, O., Teuber, M., and Dräger, B. (2006). Putrescine N-methyltransferase in Solanum tuberosum L., a calystegine-forming plant. Planta 223, 200-212. doi: 10.1007/s00425-005-0077-z
-
(2006)
Planta
, vol.223
, pp. 200-212
-
-
Stenzel, O.1
Teuber, M.2
Dräger, B.3
-
44
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
doi: 10.1093/molbev/msr121
-
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739. doi: 10.1093/molbev/msr121
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
45
-
-
33947137673
-
Putrescine N-methyltransferases-a structure-function analysis
-
doi: 10.1007/s11103-006-9126-7
-
Teuber, M., Azemi, M. E., Namjoyan, F., Meier, A. C., Wodak, A., Brandt, W., et al. (2007). Putrescine N-methyltransferases-a structure-function analysis. Plant Mol. Biol. 63, 787-801. doi: 10.1007/s11103-006-9126-7
-
(2007)
Plant Mol. Biol.
, vol.63
, pp. 787-801
-
-
Teuber, M.1
Azemi, M.E.2
Namjoyan, F.3
Meier, A.C.4
Wodak, A.5
Brandt, W.6
-
46
-
-
66649132872
-
Chaperonin overexpression promotes genetic variation and enzyme evolution
-
doi: 10.1038/nature08009
-
Tokuriki, N., and Tawfik, D. S. (2009). Chaperonin overexpression promotes genetic variation and enzyme evolution. Nature 459, 668-673. doi: 10.1038/nature08009
-
(2009)
Nature
, vol.459
, pp. 668-673
-
-
Tokuriki, N.1
Tawfik, D.S.2
-
47
-
-
84862996527
-
The rise of chemodiversity in plants
-
doi: 10.1126/science.1217411
-
Weng, J. K., Philippe, R. N., and Noel, J. P. (2012). The rise of chemodiversity in plants. Science 336, 1667-1670. doi: 10.1126/science.1217411
-
(2012)
Science
, vol.336
, pp. 1667-1670
-
-
Weng, J.K.1
Philippe, R.N.2
Noel, J.P.3
-
48
-
-
34447554595
-
Structure and mechanism of spermidine synthases
-
doi: 10.1021/bi602498k
-
Wu, H., Min, J. R., Ikeguchi, Y., Zeng, H., Dong, A. P., Loppnau, P., et al. (2007). Structure and mechanism of spermidine synthases. Biochemistry 46, 8331-8339. doi: 10.1021/bi602498k
-
(2007)
Biochemistry
, vol.46
, pp. 8331-8339
-
-
Wu, H.1
Min, J.R.2
Ikeguchi, Y.3
Zeng, H.4
Dong, A.P.5
Loppnau, P.6
-
49
-
-
0034679591
-
Crystal structure of the conserved core of protein arginine methyltransferase PRMT3
-
doi: 10.1093/emboj/19.14.3509
-
Zhang, X., Zhou, L., and Cheng, X. (2000). Crystal structure of the conserved core of protein arginine methyltransferase PRMT3. EMBO J. 19, 3509-3519. doi: 10.1093/emboj/19.14.3509
-
(2000)
EMBO J.
, vol.19
, pp. 3509-3519
-
-
Zhang, X.1
Zhou, L.2
Cheng, X.3
-
50
-
-
76749130093
-
The crystal structure of Escherichia coli spermidine synthase SpeE reveals a unique substrate-binding pocket
-
doi: 10.1016/j.jsb.2009.12.024
-
Zhou, X. D., Chua, T. K., Tkaczuk, K. L., Bujnicki, J. M., and Sivaraman, J. (2010). The crystal structure of Escherichia coli spermidine synthase SpeE reveals a unique substrate-binding pocket. J. Struct. Biol. 169, 277-285. doi: 10.1016/j.jsb.2009.12.024
-
(2010)
J. Struct. Biol.
, vol.169
, pp. 277-285
-
-
Zhou, X.D.1
Chua, T.K.2
Tkaczuk, K.L.3
Bujnicki, J.M.4
Sivaraman, J.5
-
51
-
-
70349225934
-
Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice
-
doi: 10.1104/pp.109.140632
-
Zou, C., Lehti-Shiu, M. D., Thibaud-Nissen, F., Prakash, T., Buell, C. R., and Shiu, S. H. (2009). Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice. Plant Physiol. 151, 3-15. doi: 10.1104/pp.109.140632
-
(2009)
Plant Physiol.
, vol.151
, pp. 3-15
-
-
Zou, C.1
Lehti-Shiu, M.D.2
Thibaud-Nissen, F.3
Prakash, T.4
Buell, C.R.5
Shiu, S.H.6
-
52
-
-
0035119588
-
Structures of two natural product methyltransferases reveal the basis for substrate specificity in plant O-methyltransferases
-
doi: 10.1038/85029
-
Zubieta, C., He, X. Z., Dixon, R. A., and Noel, J. P. (2001). Structures of two natural product methyltransferases reveal the basis for substrate specificity in plant O-methyltransferases. Nat. Struct. Biol. 8, 271-279. doi: 10.1038/85029
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 271-279
-
-
Zubieta, C.1
He, X.Z.2
Dixon, R.A.3
Noel, J.P.4
-
53
-
-
0035983842
-
Structural basis for the modulation of lignin monomer methylation by caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
-
doi: 10.1105/tpc.001412
-
Zubieta, C., Kota, P., Ferrer, J. L., Dixon, R. A., and Noel, J. P. (2002). Structural basis for the modulation of lignin monomer methylation by caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase. Plant Cell 14, 1265-1277. doi: 10.1105/tpc.001412
-
(2002)
Plant Cell
, vol.14
, pp. 1265-1277
-
-
Zubieta, C.1
Kota, P.2
Ferrer, J.L.3
Dixon, R.A.4
Noel, J.P.5
|