-
1
-
-
44349093364
-
Oxidation of Inorganic Nitrogen Compounds as an Energy Source
-
Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E, editors Springer New York
-
Bock E, Wagner M (2006) Oxidation of Inorganic Nitrogen Compounds as an Energy Source. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E, editors. The Prokaryotes: Springer New York. pp. 457-495.
-
(2006)
The Prokaryotes
, pp. 457-495
-
-
Bock, E.1
Wagner, M.2
-
2
-
-
28644435323
-
Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
-
DOI 10.1111/j.1462-2920.2005.00906.x
-
Treusch AH, Leininger S, Kletzin A, Schuster SC, Klenk HP, et al. (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7: 1985-1995. (Pubitemid 41752386)
-
(2005)
Environmental Microbiology
, vol.7
, Issue.12
, pp. 1985-1995
-
-
Treusch, A.H.1
Leininger, S.2
Kietzin, A.3
Schuster, S.C.4
Klenk, H.-P.5
Schleper, C.6
-
3
-
-
11144354360
-
Environmental Genome Shotgun Sequencing of the Sargasso Sea
-
DOI 10.1126/science.1093857
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74. (Pubitemid 38451457)
-
(2004)
Science
, vol.304
, Issue.5667
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
Fouts, D.E.11
Levy, S.12
Knap, A.H.13
Lomas, M.W.14
Nealson, K.15
White, O.16
Peterson, J.17
Hoffman, J.18
Parsons, R.19
Baden-Tillson, H.20
Pfannkoch, C.21
Rogers, Y.-H.22
Smith, H.O.23
more..
-
4
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Könneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB, et al. (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437: 543-546.
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Könneke, M.1
Bernhard, A.E.2
De La Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
-
5
-
-
39149118031
-
Mesophilic crenarchaeota: Proposal for a third archaeal phylum, the Thaumarchaeota
-
DOI 10.1038/nrmicro1852, PII NRMICRO1852
-
Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P (2008) Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 6: 245-252. (Pubitemid 351256319)
-
(2008)
Nature Reviews Microbiology
, vol.6
, Issue.3
, pp. 245-252
-
-
Brochier-Armanet, C.1
Boussau, B.2
Gribaldo, S.3
Forterre, P.4
-
6
-
-
77955273494
-
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
-
Spang A, Hatzenpichler R, Brochier-Armanet C, Rattei T, Tischler P, et al. (2010) Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends Microbiol 18: 331-340.
-
(2010)
Trends Microbiol
, vol.18
, pp. 331-340
-
-
Spang, A.1
Hatzenpichler, R.2
Brochier-Armanet, C.3
Rattei, T.4
Tischler, P.5
-
7
-
-
78649703098
-
Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria
-
Park BJ, Park SJ, Yoon DN, Schouten S, Sinninghe Damste JS, et al. (2010) Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria. Appl Environ Microbiol 76: 7575-7587.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 7575-7587
-
-
Park, B.J.1
Park, S.J.2
Yoon, D.N.3
Schouten, S.4
Sinninghe Damste, J.S.5
-
8
-
-
33747596691
-
Archaeal nitrification in the ocean
-
DOI 10.1073/pnas.0600756103
-
Wuchter C, Abbas B, Coolen MJ, Herfort L, van Bleijswijk J, et al. (2006) Archaeal nitrification in the ocean. Proc Natl Acad Sci U S A 103: 12317-12322. (Pubitemid 44267257)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.33
, pp. 12317-12322
-
-
Wuchter, C.1
Abbas, B.2
Coolen, M.J.L.3
Herfort, L.4
Van Bleijswijk, J.5
Timmers, P.6
Strous, M.7
Teira, E.8
Herndl, G.J.9
Middelburg, J.J.10
Schouten, S.11
Damste, J.S.S.12
-
9
-
-
79957684288
-
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
-
Tourna M, Stieglmeier M, Spang A, Könneke M, Schintlmeister A, et al. (2011) Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci U S A 108: 8420-8425.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 8420-8425
-
-
Tourna, M.1
Stieglmeier, M.2
Spang, A.3
Könneke, M.4
Schintlmeister, A.5
-
10
-
-
83155173396
-
Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil
-
Jung MY, Park SJ, Min D, Kim JS, Rijpstra WI, et al. (2011) Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil. Appl Environ Microbiol 77: 8635-8647.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 8635-8647
-
-
Jung, M.Y.1
Park, S.J.2
Min, D.3
Kim, J.S.4
Rijpstra, W.I.5
-
11
-
-
84861939476
-
Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil
-
Kim JG, Jung MY, Park SJ, Rijpstra WIC, DamstéJSS, et al. (2012) Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil. Environ Microbiol 14: 1528-1543.
-
(2012)
Environ Microbiol
, vol.14
, pp. 1528-1543
-
-
Kim, J.G.1
Jung, M.Y.2
Park, S.J.3
Rijpstra, W.I.C.4
Damsté, J.S.S.5
-
12
-
-
46149095739
-
Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments
-
Park SJ, Park BJ, Rhee SK (2008) Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments. Extremophiles 12: 605-615.
-
(2008)
Extremophiles
, vol.12
, pp. 605-615
-
-
Park, S.J.1
Park, B.J.2
Rhee, S.K.3
-
13
-
-
33845286513
-
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
-
DOI 10.1073/pnas.0608549103
-
Hallam SJ, Konstantinidis KT, Putnam N, Schleper C, Watanabe Y, et al. (2006) Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc Natl Acad Sci U S A 103: 18296-18301. (Pubitemid 44871652)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.48
, pp. 18296-18301
-
-
Hallam, S.J.1
Konstantinidis, K.T.2
Putnam, N.3
Schleper, C.4
Watanabe, Y.-I.5
Sugahara, J.6
Preston, C.7
De La, T.J.8
Richardson, P.M.9
DeLong, E.F.10
-
14
-
-
33646260901
-
Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota
-
Hallam SJ, Mincer TJ, Schleper C, Preston CM, Roberts K, et al. (2006) Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol 4: e95.
-
(2006)
PLoS Biol
, vol.4
-
-
Hallam, S.J.1
Mincer, T.J.2
Schleper, C.3
Preston, C.M.4
Roberts, K.5
-
15
-
-
77952739182
-
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
-
Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, et al. (2010) Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc Natl Acad Sci U S A 107: 8818-8823.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 8818-8823
-
-
Walker, C.B.1
De La Torre, J.R.2
Klotz, M.G.3
Urakawa, H.4
Pinel, N.5
-
16
-
-
79952050667
-
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
-
Blainey PC, Mosier AC, Potanina A, Francis CA, Quake SR (2011) Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One 6: e16626.
-
(2011)
PLoS One
, vol.6
-
-
Blainey, P.C.1
Mosier, A.C.2
Potanina, A.3
Francis, C.A.4
Quake, S.R.5
-
17
-
-
80053598581
-
Genome sequence of an ammonia-oxidizing soil archaeon, " Candidatus Nitrosoarchaeum koreensis" MY1
-
Kim BK, Jung MY, Yu DS, Park SJ, Oh TK, et al. (2011) Genome sequence of an ammonia-oxidizing soil archaeon, " Candidatus Nitrosoarchaeum koreensis" MY1. J Bacteriol 193: 5539-5540.
-
(2011)
J Bacteriol
, vol.193
, pp. 5539-5540
-
-
Kim, B.K.1
Jung, M.Y.2
Yu, D.S.3
Park, S.J.4
Oh, T.K.5
-
18
-
-
84855282408
-
Metagenomic analysis of a complex marine planktonic thaumarchaeal community from the Gulf of Maine
-
Tully BJ, Nelson WC, Heidelberg JF (2012) Metagenomic analysis of a complex marine planktonic thaumarchaeal community from the Gulf of Maine. Environ Microbiol 14: 254-267.
-
(2012)
Environ Microbiol
, vol.14
, pp. 254-267
-
-
Tully, B.J.1
Nelson, W.C.2
Heidelberg, J.F.3
-
19
-
-
84861220096
-
Genome sequence of "Candidatus Nitrosopumilus salaria" BD31, an ammonia-oxidizing archaeon from the San Francisco Bay estuary
-
Mosier AC, Allen EE, Kim M, Ferriera S, Francis CA (2012) Genome sequence of "Candidatus Nitrosopumilus salaria" BD31, an ammonia-oxidizing archaeon from the San Francisco Bay estuary. J Bacteriol 194: 2121-2122.
-
(2012)
J Bacteriol
, vol.194
, pp. 2121-2122
-
-
Mosier, A.C.1
Allen, E.E.2
Kim, M.3
Ferriera, S.4
Francis, C.A.5
-
20
-
-
84861212981
-
Genome sequence of "Candidatus Nitrosoarchaeum limnia" BG20, a low-salinity ammonia-oxidizing archaeon from the San Francisco Bay estuary
-
Mosier AC, Allen EE, Kim M, Ferriera S, Francis CA (2012) Genome sequence of "Candidatus Nitrosoarchaeum limnia" BG20, a low-salinity ammonia-oxidizing archaeon from the San Francisco Bay estuary. J Bacteriol 194: 2119-2120.
-
(2012)
J Bacteriol
, vol.194
, pp. 2119-2120
-
-
Mosier, A.C.1
Allen, E.E.2
Kim, M.3
Ferriera, S.4
Francis, C.A.5
-
21
-
-
38549131184
-
Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol
-
DOI 10.1111/j.1462-2920.2007.01506.x
-
de la Torre JR, Walker CB, Ingalls AE, K?nneke M, Stahl DA (2008) Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ Microbiol 10: 810-818. (Pubitemid 351160920)
-
(2008)
Environmental Microbiology
, vol.10
, Issue.3
, pp. 810-818
-
-
De La, T.J.R.1
Walker, C.B.2
Ingalls, A.E.3
Konneke, M.4
Stahl, D.A.5
-
22
-
-
41149153310
-
A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring
-
DOI 10.1073/pnas.0708857105
-
Hatzenpichler R, Lebedeva EV, Spieck E, Stoecker K, Richter A, et al. (2008) A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. Proc Natl Acad Sci U S A 105: 2134-2139. (Pubitemid 351439477)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.6
, pp. 2134-2139
-
-
Hatzenpichler, R.1
Lebedeva, E.V.2
Spieck, E.3
Stoecker, K.4
Richter, A.5
Daims, H.6
Wagner, M.7
-
23
-
-
0032876852
-
Prokaryotic genome size and SSU rDNA copy number: Estimation of microbial relative abundance from a mixed population
-
DOI 10.1007/s002489900162
-
Fogel GB, Collins CR, Li J, Brunk CF (1999) Prokaryotic Genome Size and SSU rDNA Copy Number: Estimation of Microbial Relative Abundance from a Mixed Population. Microb Ecol 38: 93-113. (Pubitemid 29412122)
-
(1999)
Microbial Ecology
, vol.38
, Issue.2
, pp. 93-113
-
-
Fogel, G.B.1
Collins, C.R.2
Li, J.3
Brunk, C.F.4
-
24
-
-
34547549547
-
Deep-sea vent ε-proteobacterial genomes provide insights into emergence of pathogens
-
DOI 10.1073/pnas.0700687104
-
Nakagawa S, Takaki Y, Shimamura S, Reysenbach A-L, Takai K, et al. (2007) Deep-sea vent ε-proteobacterial genomes provide insights into emergence of pathogens. Proc Natl Acad Sci 104: 12146-12150. (Pubitemid 47185644)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.29
, pp. 12146-12150
-
-
Nakagawa, S.1
Takaki, Y.2
Shimamura, S.3
Reysenbach, A.-L.4
Takai, K.5
Horikoshi, K.6
-
25
-
-
84870486180
-
The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: Insights into metabolic versatility and environmental adaptations
-
Spang A, Poehlein A, Offre P, Zumbragel S, Haider S, et al. (2012) The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations. Environ Microbiol 14: 3122-3145.
-
(2012)
Environ Microbiol
, vol.14
, pp. 3122-3145
-
-
Spang, A.1
Poehlein, A.2
Offre, P.3
Zumbragel, S.4
Haider, S.5
-
27
-
-
3543051830
-
Mauve: Multiple alignment of conserved genomic sequence with rearrangements
-
DOI 10.1101/gr.2289704
-
Darling ACE, Mau B, Blattner FR, Perna NT (2004) Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements. Genome Res 14: 1394-1403. (Pubitemid 39029237)
-
(2004)
Genome Research
, vol.14
, Issue.7
, pp. 1394-1403
-
-
Darling, A.C.E.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
28
-
-
77953050946
-
A catalog of reference genomes from the human microbiome
-
Human Microbiome Jumpstart Reference
-
Human Microbiome Jumpstart Reference Strains C, Nelson KE, Weinstock GM, Highlander SK, Worley KC, et al. (2010) A catalog of reference genomes from the human microbiome. Science 328: 994-999.
-
(2010)
Science
, vol.328
, pp. 994-999
-
-
Strains, C.1
Nelson, K.E.2
Weinstock, G.M.3
Highlander, S.K.4
Worley, K.C.5
-
29
-
-
84870702066
-
Draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus koreensis" AR1, from marine sediment
-
Park SJ, Kim JG, Jung MY, Kim SJ, Cha IT, et al. (2012) Draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus koreensis" AR1, from marine sediment. J Bacteriol 194: 6940-6941.
-
(2012)
J Bacteriol
, vol.194
, pp. 6940-6941
-
-
Park, S.J.1
Kim, J.G.2
Jung, M.Y.3
Kim, S.J.4
Cha, I.T.5
-
30
-
-
84870692770
-
Draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus sediminis" AR2, from Svalbard in the Arctic Circle
-
Park SJ, Kim JG, Jung MY, Kim SJ, Cha IT, et al. (2012) Draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus sediminis" AR2, from Svalbard in the Arctic Circle. J Bacteriol 194: 6948-6949.
-
(2012)
J Bacteriol
, vol.194
, pp. 6948-6949
-
-
Park, S.J.1
Kim, J.G.2
Jung, M.Y.3
Kim, S.J.4
Cha, I.T.5
-
31
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, et al. (2007) The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol 5: e77.
-
(2007)
PLoS Biol
, vol.5
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
-
32
-
-
31844435178
-
A comparative categorization of protein function encoded in bacterial or archeal genomic islands
-
Merkl R (2006) A comparative categorization of protein function encoded in bacterial or archeal genomic islands. J Mol Evol 62: 1-14.
-
(2006)
J Mol Evol
, vol.62
, pp. 1-14
-
-
Merkl, R.1
-
33
-
-
84893736287
-
Thermodynamic characterization of proton-ionizable functional groups on the cell surfaces of ammonia-oxidizing bacteria and archaea
-
Gorman-Lewis D, Martens-Habbena W, Stahl DA (2014) Thermodynamic characterization of proton-ionizable functional groups on the cell surfaces of ammonia-oxidizing bacteria and archaea. Geobiology 12: 157-171.
-
(2014)
Geobiology
, vol.12
, pp. 157-171
-
-
Gorman-Lewis, D.1
Martens-Habbena, W.2
Stahl, D.A.3
-
34
-
-
80053158633
-
Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil
-
Lehtovirta-Morley LE, Stoecker K, Vilcinskas A, Prosser JI, Nicol GW (2011) Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil. Proc Natl Acad Sci U S A 108: 15892-15897.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 15892-15897
-
-
Lehtovirta-Morley, L.E.1
Stoecker, K.2
Vilcinskas, A.3
Prosser, J.I.4
Nicol, G.W.5
-
35
-
-
84868611658
-
Metagenomic analysis of ammonia-oxidizing archaea affiliated with the soil group
-
Bartossek R, Spang A, Weidler G, Lanzen A, Schleper C (2012) Metagenomic analysis of ammonia-oxidizing archaea affiliated with the soil group. Front Microbiol 3: 208.
-
(2012)
Front Microbiol
, vol.3
, pp. 208
-
-
Bartossek, R.1
Spang, A.2
Weidler, G.3
Lanzen, A.4
Schleper, C.5
-
36
-
-
84872560122
-
Hydroxylamine as an intermediate in ammonia oxidation by globally abundant marine archaea
-
Vajrala N, Martens-Habbena W, Sayavedra-Soto LA, Schauer A, Bottomley PJ, et al. (2013) Hydroxylamine as an intermediate in ammonia oxidation by globally abundant marine archaea. Proc Natl Acad Sci U S A 110: 1006-1011.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 1006-1011
-
-
Vajrala, N.1
Martens-Habbena, W.2
Sayavedra-Soto, L.A.3
Schauer, A.4
Bottomley, P.J.5
-
37
-
-
85081805311
-
Isotopic signatures of NO produced by ammonia-oxidizing archaea from soils
-
Jung MY, Well R, Min D, Giesemann A, Park SJ, et al. (2013) Isotopic signatures of NO produced by ammonia-oxidizing archaea from soils. ISME J.
-
(2013)
ISME J
-
-
Jung, M.Y.1
Well, R.2
Min, D.3
Giesemann, A.4
Park, S.J.5
-
39
-
-
79953660218
-
A novel pathway for the biosynthesis of heme in Archaea: Genome-based bioinformatic predictions and experimental evidence
-
Storbeck S, Rolfes S, Raux-Deery E, Warren MJ, Jahn D, et al. (2010) A novel pathway for the biosynthesis of heme in Archaea: genome-based bioinformatic predictions and experimental evidence. Archaea 2010: 175050.
-
(2010)
Archaea
, vol.2010
, pp. 175050
-
-
Storbeck, S.1
Rolfes, S.2
Raux-Deery, E.3
Warren, M.J.4
Jahn, D.5
-
40
-
-
58149382075
-
Genome-based analysis of heme biosynthesis and uptake in prokaryotic systems
-
Cavallaro G, Decaria L, Rosato A (2008) Genome-based analysis of heme biosynthesis and uptake in prokaryotic systems. J Proteome Res 7: 4946-4954.
-
(2008)
J Proteome Res
, vol.7
, pp. 4946-4954
-
-
Cavallaro, G.1
Decaria, L.2
Rosato, A.3
-
41
-
-
35948986372
-
Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: Implications for niche adaptation
-
DOI 10.1111/j.1462-2920.2007.01409.x
-
Stein LY, Arp DJ, Berube PM, Chain PS, Hauser L, et al. (2007) Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation. Environ Microbiol 9: 2993-3007. (Pubitemid 350076288)
-
(2007)
Environmental Microbiology
, vol.9
, Issue.12
, pp. 2993-3007
-
-
Stein, L.Y.1
Arp, D.J.2
Berube, P.M.3
Chain, P.S.G.4
Hauser, L.5
Jetten, M.S.M.6
Klotz, M.G.7
Larimer, F.W.8
Norton, J.M.9
Op, D.C.H.J.M.10
Shin, M.11
Wei, X.12
-
42
-
-
44949239735
-
Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment
-
DOI 10.1128/AEM.02722-07
-
Norton JM, Klotz MG, Stein LY, Arp DJ, Bottomley PJ, et al. (2008) Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment. Appl Environ Microbiol 74: 3559-3572. (Pubitemid 351812811)
-
(2008)
Applied and Environmental Microbiology
, vol.74
, Issue.11
, pp. 3559-3572
-
-
Norton, J.M.1
Klotz, M.G.2
Stein, L.Y.3
Arp, D.J.4
Bottomley, P.J.5
Chain, P.S.G.6
Hauser, L.J.7
Land, M.L.8
Larimer, F.W.9
Shin, M.W.10
Starkenburg, S.R.11
-
43
-
-
18444408108
-
Contribution of Archaea to total prokaryotic production in the deep atlantic ocean
-
DOI 10.1128/AEM.71.5.2303-2309.2005
-
Herndl GJ, Reinthaler T, Teira E, van Aken H, Veth C, et al. (2005) Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean. Appl Environ Microbiol 71: 2303-2309. (Pubitemid 40646970)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.5
, pp. 2303-2309
-
-
Herndl, G.J.1
Reinthaler, T.2
Teira, E.3
Van Aken, H.4
Veth, C.5
Pernthaler, A.6
Pernthaler, J.7
-
44
-
-
33646262107
-
Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon
-
Ingalls AE, Shah SR, Hansman RL, Aluwihare LI, Santos GM, et al. (2006) Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon. Proc Natl Acad Sci U S A 103: 6442-6447.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 6442-6447
-
-
Ingalls, A.E.1
Shah, S.R.2
Hansman, R.L.3
Aluwihare, L.I.4
Santos, G.M.5
-
45
-
-
79957684288
-
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
-
Tourna M, Stieglmeier M, Spang A, Konneke M, Schintlmeister A, et al. (2011) Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci U S A 108: 8420-8425.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 8420-8425
-
-
Tourna, M.1
Stieglmeier, M.2
Spang, A.3
Konneke, M.4
Schintlmeister, A.5
-
46
-
-
68549085316
-
Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre
-
Konstantinidis KT, Braff J, Karl DM, DeLong EF (2009) Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre. Appl Environ Microbiol 75: 5345-5355.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5345-5355
-
-
Konstantinidis, K.T.1
Braff, J.2
Karl, D.M.3
DeLong, E.F.4
-
47
-
-
0028174170
-
Seasonal variation in sediment urea turnover in a shallow estuary
-
Therkildsen MS, Lomstein BA (1994) Seasonal variation in sediment urea turnover in a shallow estuary. Mar Ecol Prog Ser 109: 77-82.
-
(1994)
Mar Ecol Prog Ser
, vol.109
, pp. 77-82
-
-
Therkildsen, M.S.1
Lomstein, B.A.2
-
48
-
-
84868130695
-
Role for urea in nitrification by polar marine Archaea
-
Alonso-Sáez L, Waller AS, Mende DR, Bakker K, Farnelid H, et al. (2012) Role for urea in nitrification by polar marine Archaea. Proc Natl Acad Sci U S A 109: 17989-17994.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 17989-17994
-
-
Alonso-Sáez, L.1
Waller, A.S.2
Mende, D.R.3
Bakker, K.4
Farnelid, H.5
-
49
-
-
80054840667
-
Physiology and genomics of ammonia-oxidizing archaea
-
Ward BB, Arp DJ, Klotz MG, editors. Washington, DC, USA: American Society for Microbiology
-
Urakawa H, Martens-Habbena W, Stahl DA (2011) Physiology and genomics of ammonia-oxidizing archaea. In: Ward BB, Arp DJ, Klotz MG, editors. Nitrification. Washington, DC, USA: American Society for Microbiology. pp. 117-156.
-
(2011)
Nitrification
, pp. 117-156
-
-
Urakawa, H.1
Martens-Habbena, W.2
Stahl, D.A.3
-
50
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, et al. (2011) Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol 9: 467-477.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
-
51
-
-
0035156793
-
Vertical distributions of interstitial phosphate and fluoride in anoxic sediment: Insight into the formation of an authigenic fluoro-phosphorus compound
-
Sasaki K, Shinichiro N, Shizuo T (2001) Vertical distributions of interstitial phosphate and fluoride in anoxic sediment: Insight into the formation of an authigenic fluoro-phosphorus compound. Geochem J 35: 295-306. (Pubitemid 33056178)
-
(2001)
Geochemical Journal
, vol.35
, Issue.5
, pp. 295-306
-
-
Sasaki, K.1
Noriki, S.2
Tsunogai, S.3
-
52
-
-
85081810979
-
Pronounced summer to winter differences and higher wintertime richness in coastal Antarctic marine bacterioplankton
-
Ghiglione JF, Murray AE (2011) Pronounced summer to winter differences and higher wintertime richness in coastal Antarctic marine bacterioplankton. Environ Microbiol.
-
(2011)
Environ Microbiol
-
-
Ghiglione, J.F.1
Murray, A.E.2
-
54
-
-
52949088250
-
Environmental genomics reveals a functional chlorite dismutase in the nitriteoxidizing bacterium 'Candidatus Nitrospira defluvii'
-
Maixner F, Wagner M, Lucker S, Pelletier E, Schmitz-Esser S, et al. (2008) Environmental genomics reveals a functional chlorite dismutase in the nitriteoxidizing bacterium 'Candidatus Nitrospira defluvii'. Environ Microbiol 10: 3043-3056.
-
(2008)
Environ Microbiol
, vol.10
, pp. 3043-3056
-
-
Maixner, F.1
Wagner, M.2
Lucker, S.3
Pelletier, E.4
Schmitz-Esser, S.5
-
55
-
-
0024633896
-
4+, and CO oxidation by methanotrophs and nitrifiers
-
4+, and CO oxidation by methanotrophs and nitrifiers. Microbiol Rev 53: 68-84.
-
(1989)
Microbiol Rev
, vol.53
, pp. 68-84
-
-
Bedard, C.1
Knowles, R.2
-
56
-
-
84866318836
-
Draft genome sequence of the sulfur-oxidizing bacterium "Candidatus Sulfurovum sediminum" AR, which belongs to the Epsilonproteobacteria
-
Park SJ, Ghai R, Martin-Cuadrado AB, Rodriguez-Valera F, Jung MY, et al. (2012) Draft genome sequence of the sulfur-oxidizing bacterium "Candidatus Sulfurovum sediminum" AR, which belongs to the Epsilonproteobacteria. J Bacteriol 194: 4128-4129.
-
(2012)
J Bacteriol
, vol.194
, pp. 4128-4129
-
-
Park, S.J.1
Ghai, R.2
Martin-Cuadrado, A.B.3
Rodriguez-Valera, F.4
Jung, M.Y.5
-
57
-
-
39649088960
-
Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans
-
DOI 10.1128/AEM.01844-07
-
Sievert SM, Scott KM, Klotz MG, Chain PS, Hauser LJ, et al. (2008) Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans. Appl Environ Microbiol 74: 1145-1156. (Pubitemid 351287086)
-
(2008)
Applied and Environmental Microbiology
, vol.74
, Issue.4
, pp. 1145-1156
-
-
Sievert, S.M.1
Scott, K.M.2
Klotz, M.G.3
Chain, P.S.G.4
Hauser, L.J.5
Hemp, J.6
Hugler, M.7
Land, M.8
Lapidus, A.9
Larimer, F.W.10
Lucas, S.11
Malfatti, S.A.12
Meyer, F.13
Paulsen, I.T.14
Ren, Q.15
Simon, J.16
Bailey, K.17
Diaz, E.18
Fitzpatrick, K.A.19
Glover, B.20
Gwatney, N.21
Korajkic, A.22
Long, A.23
Mobberley, J.M.24
Pantry, S.N.25
Pazder, G.26
Peterson, S.27
Quintanilla, J.D.28
Sprinkle, R.29
Stephens, J.30
Thomas, P.31
Vaughn, R.32
Weber, M.J.33
Wooten, L.L.34
more..
-
58
-
-
36849028081
-
Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea
-
DOI 10.1038/ismej.2007.83, PII ISMEJ200783
-
Yakimov MM, La Cono V, Denaro R, D'Auria G, Decembrini F, et al. (2007) Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea. ISME J 1: 743-755. (Pubitemid 350231342)
-
(2007)
ISME Journal
, vol.1
, Issue.8
, pp. 743-755
-
-
Yakimov, M.M.1
La, C.V.2
Denaro, R.3
D'Auria, G.4
Decembrini, F.5
Timmis, K.N.6
Golyshin, P.N.7
Giuliano, L.8
-
59
-
-
0028972895
-
Influence of sulfide inhibition of nitrification on nitrogen regeneration in sediments
-
Joye SB, Hollibaugh JT (1995) Influence of sulfide inhibition of nitrification on nitrogen regeneration in sediments. Science 270: 623-625. (Pubitemid 26457191)
-
(1995)
Science
, vol.270
, Issue.5236
, pp. 623-625
-
-
Joye, S.B.1
Hollibaugh, J.T.2
-
60
-
-
33745053633
-
A cold-loving crenarchaeon is a substantial part of a novel microbial community in cold sulphidic marsh water
-
DOI 10.1111/j.1574-6941.2006.00088.x
-
Koch M, Rudolph C, Moissl C, Huber R (2006) A cold-loving crenarchaeon is a substantial part of a novel microbial community in cold sulphidic marsh water. FEMS Microbiol Ecol 57: 55-66. (Pubitemid 43876439)
-
(2006)
FEMS Microbiology Ecology
, vol.57
, Issue.1
, pp. 55-66
-
-
Koch, M.1
Rudolph, C.2
Moissl, C.3
Huber, R.4
-
61
-
-
77955245722
-
First description of giant Archaea (Thaumarchaeota) associated with putative bacterial ectosymbionts in a sulfidic marine habitat
-
Muller F, Brissac T, Le Bris N, Felbeck H, Gros O (2010) First description of giant Archaea (Thaumarchaeota) associated with putative bacterial ectosymbionts in a sulfidic marine habitat. Environ Microbiol 12: 2371-2383.
-
(2010)
Environ Microbiol
, vol.12
, pp. 2371-2383
-
-
Muller, F.1
Brissac, T.2
Le Bris, N.3
Felbeck, H.4
Gros, O.5
-
62
-
-
70349653431
-
Biochemistry and molecular biology of lithotrophic sulfur oxidation by taxonomically and ecologically diverse bacteria and archaea
-
Ghosh W, Dam B (2009) Biochemistry and molecular biology of lithotrophic sulfur oxidation by taxonomically and ecologically diverse bacteria and archaea. FEMS Microbiol Rev 33: 999-1043.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 999-1043
-
-
Ghosh, W.1
Dam, B.2
-
63
-
-
0027329330
-
A comparison of NO and N2O production by the autotrophic nitrifier Nitrosomonas europaea and the heterotrophic nitrifier Alcaligenes faecalis
-
Anderson IC, Poth M, Homstead J, Burdige D (1993) A comparison of NO and N2O production by the autotrophic nitrifier Nitrosomonas europaea and the heterotrophic nitrifier Alcaligenes faecalis. Appl Environ Microbiol 59: 3525-3533.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 3525-3533
-
-
Anderson, I.C.1
Poth, M.2
Homstead, J.3
Burdige, D.4
-
64
-
-
0030864020
-
2O by pure cultures of nitrifying and denitrifying bacteria during changes in aeration
-
Kester RA, De Boer W, Laanbroek HJ (1997) Production of NO and N2O by pure cultures of nitrifying and denitrifying bacteria during changes in aeration. Appl Environ Microbiol 63: 3872-3877. (Pubitemid 27411341)
-
(1997)
Applied and Environmental Microbiology
, vol.63
, Issue.10
, pp. 3872-3877
-
-
Kester, R.A.1
De Boer, W.2
Laanbroek, H.J.3
-
65
-
-
0015313851
-
Identification of the sources of nitrous oxide produced by oxidative and reductive processes in Nitrosomonas europaea
-
Ritchie GA, Nicholas DJ (1972) Identification of the sources of nitrous oxide produced by oxidative and reductive processes in Nitrosomonas europaea. Biochem J 126: 1181-1191.
-
(1972)
Biochem J
, vol.126
, pp. 1181-1191
-
-
Ritchie, G.A.1
Nicholas, D.J.2
-
66
-
-
39849102118
-
Unraveling the source of nitric oxide emission during nitrification
-
DOI 10.2175/106143007X220815
-
Kampschreur MJ, Picioreanu C, Tan N, Kleerebezem R, Jetten MS, et al. (2007) Unraveling the source of nitric oxide emission during nitrification. Water Environ Res 79: 2499-2509. (Pubitemid 351846455)
-
(2007)
Water Environment Research
, vol.79
, Issue.13
, pp. 2499-2509
-
-
Kampschreur, M.J.1
Picioreanu, C.2
Tan, N.3
Kleerebezem, R.4
Jetten, M.S.M.5
Van Loosdrecht, M.C.M.6
-
67
-
-
84872250001
-
Physiology and diversity of ammonia-oxidizing archaea
-
Stahl DA, de la Torre JR (2012) Physiology and diversity of ammonia-oxidizing archaea. Annu Rev Microbiol 66: 83-101.
-
(2012)
Annu Rev Microbiol
, vol.66
, pp. 83-101
-
-
Stahl, D.A.1
De La Torre, J.R.2
-
68
-
-
84870493927
-
Mimicking the oxygen minimum zones: Stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system
-
Yan J, Haaijer SC, Op den Camp HJ, van Niftrik L, Stahl DA, et al. (2012) Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system. Environ Microbiol 14: 3146-3158.
-
(2012)
Environ Microbiol
, vol.14
, pp. 3146-3158
-
-
Yan, J.1
Haaijer, S.C.2
Op Den Camp, H.J.3
Van Niftrik, L.4
Stahl, D.A.5
-
69
-
-
80052490842
-
Isotopic signature of N2O produced by marine ammonia-oxidizing archaea
-
Santoro AE, Buchwald C, McIlvin MR, Casciotti KL (2011) Isotopic signature of N2O produced by marine ammonia-oxidizing archaea. Science 333: 1282-1285.
-
(2011)
Science
, vol.333
, pp. 1282-1285
-
-
Santoro, A.E.1
Buchwald, C.2
McIlvin, M.R.3
Casciotti, K.L.4
-
70
-
-
84863691368
-
Production of oceanic nitrous oxide by ammonia-oxidizing archaea
-
Löscher CR, Kock A, Könneke M, LaRoche J, Bange HW, et al. (2012) Production of oceanic nitrous oxide by ammonia-oxidizing archaea. Biogeosciences 9: 2419-2429.
-
(2012)
Biogeosciences
, vol.9
, pp. 2419-2429
-
-
Löscher, C.R.1
Kock, A.2
Könneke, M.3
LaRoche, J.4
Bange, H.W.5
-
71
-
-
0032568375
-
The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
-
DOI 10.1038/32831
-
Deckert G, Warren PV, Gaasterland T, Young WG, Lenox AL, et al. (1998) The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature 392: 353-358. (Pubitemid 28168724)
-
(1998)
Nature
, vol.392
, Issue.6674
, pp. 353-358
-
-
Deckert, G.1
Warren, P.V.2
Gaasterland, T.3
Young, W.G.4
Lenox, A.L.5
Graham, D.E.6
Overbeek, R.7
Snead, M.A.8
Keller, M.9
Aujay, M.10
Huber, R.11
Feldman, R.A.12
Short, J.M.13
Olsen, G.J.14
Swanson, R.V.15
-
72
-
-
0037040980
-
Flavohemoglobin detoxifies nitric oxide in aerobic, but not anaerobic, Escherichia coli: Evidence for a novel inducible anaerobic nitric oxide-scavenging activity
-
DOI 10.1074/jbc.M110470200
-
Gardner AM, Gardner PR (2002) Flavohemoglobin detoxifies nitric oxide in aerobic, but not anaerobic, Escherichia coli. Evidence for a novel inducible anaerobic nitric oxide-scavenging activity. J Biol Chem 277: 8166-8171. (Pubitemid 34968271)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.10
, pp. 8166-8171
-
-
Gardner, A.M.1
Gardner, P.R.2
-
73
-
-
0032704710
-
Prokaryotic nitrate reduction: Molecular properties and functional distinction among bacterial nitrate reductases
-
Moreno-Vivian C, Cabello P, Martinez-Luque M, Blasco R, Castillo F (1999) Prokaryotic nitrate reduction: molecular properties and functional distinction among bacterial nitrate reductases. J Bacteriol 181: 6573-6584. (Pubitemid 29517969)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.21
, pp. 6573-6584
-
-
Moreno-Vivian, C.1
Cabello, P.2
Martinez-Luque, M.3
Blasco, R.4
Castillo, F.5
-
74
-
-
44649139744
-
Metagenome microarray for screening of fosmid clones containing specific genes
-
DOI 10.1111/j.1574-6968.2008.01180.x
-
Park SJ, Kang CH, Chae JC, Rhee SK (2008) Metagenome microarray for screening of fosmid clones containing specific genes. FEMS Microbiol Lett 284: 28-34. (Pubitemid 351776892)
-
(2008)
FEMS Microbiology Letters
, vol.284
, Issue.1
, pp. 28-34
-
-
Park, S.-J.1
Kang, C.-H.2
Chae, J.-C.3
Rhee, S.-K.4
-
76
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-145.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
-
77
-
-
59149090570
-
MetaGeneAnnotator: Detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes
-
Noguchi H, Taniguchi T, Itoh T (2008) MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes. DNA Res 15: 387-396.
-
(2008)
DNA Res
, vol.15
, pp. 387-396
-
-
Noguchi, H.1
Taniguchi, T.2
Itoh, T.3
-
78
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
DOI 10.1093/nar/25.5.955
-
Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964. (Pubitemid 27298263)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.5
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
79
-
-
53549118607
-
The metagenomics RAST server - A public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, et al. (2008) The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
-
80
-
-
84863809408
-
Metagenomes of Mediterranean coastal lagoons
-
Ghai R, Hernandez CM, Picazo A, Mizuno CM, Ininbergs K, et al. (2012) Metagenomes of Mediterranean coastal lagoons. Sci Rep 2: 490.
-
(2012)
Sci Rep
, vol.2
, pp. 490
-
-
Ghai, R.1
Hernandez, C.M.2
Picazo, A.3
Mizuno, C.M.4
Ininbergs, K.5
-
81
-
-
84883703281
-
New abundant microbial groups in aquatic hypersaline environments
-
Ghai R, Pasic L, Fernandez AB, Martin-Cuadrado AB, Mizuno CM, et al. (2011) New abundant microbial groups in aquatic hypersaline environments. Sci Rep 1: 135.
-
(2011)
Sci Rep
, vol.1
, pp. 135
-
-
Ghai, R.1
Pasic, L.2
Fernandez, A.B.3
Martin-Cuadrado, A.B.4
Mizuno, C.M.5
-
82
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
83
-
-
46749110034
-
FactoMineR: An R package for multivariate analysis
-
Lê S, Josse J, F H (2008) FactoMineR: An R package for multivariate analysis. J Stat Soft 25: 1-18.
-
(2008)
J Stat Soft
, vol.25
, pp. 1-18
-
-
Lê, S.1
Josse, J.2
H, F.3
-
84
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, et al. (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 29: 22-28. (Pubitemid 32054398)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
85
-
-
34547579396
-
CRISPRFinder: A web tool to identify clustered regularly interspaced short palindromic repeats
-
Grissa I, Vergnaud G, Pourcel C (2007) CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res 35: W52-57.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
86
-
-
24044433279
-
ACT: The Artemis comparison tool
-
DOI 10.1093/bioinformatics/bti553
-
Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, et al. (2005) ACT: the Artemis Comparison Tool. Bioinformatics 21: 3422-3423. (Pubitemid 41222448)
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3422-3423
-
-
Carver, T.J.1
Rutherford, K.M.2
Berriman, M.3
Rajandream, M.-A.4
Barrell, B.G.5
Parkhill, J.6
-
87
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter M, Rossello-Mora R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106: 19126-19131.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rossello-Mora, R.2
-
88
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
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