메뉴 건너뛰기




Volumn 74, Issue 11, 2008, Pages 3559-3572

Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment

Author keywords

[No Author keywords available]

Indexed keywords

GENOME SEQUENCING; SOIL ENVIRONMENTS;

EID: 44949239735     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02722-07     Document Type: Article
Times cited : (185)

References (76)
  • 1
    • 0033924053 scopus 로고    scopus 로고
    • Surface attachment of ammonia-oxidizing bacteria in soil
    • Aakra, A., M. Hesselsoe, and L. R. Bakken. 2000. Surface attachment of ammonia-oxidizing bacteria in soil. Microb. Ecol. 39:222-235.
    • (2000) Microb. Ecol , vol.39 , pp. 222-235
    • Aakra, A.1    Hesselsoe, M.2    Bakken, L.R.3
  • 2
    • 35848950017 scopus 로고    scopus 로고
    • The impact of genome analyses on our understanding of ammonia-oxidizing bacteria
    • Arp, D. J., P. S. G. Chain, and M. G. Klotz. 2007. The impact of genome analyses on our understanding of ammonia-oxidizing bacteria. Annu. Rev. Microbiol. 61:503-528.
    • (2007) Annu. Rev. Microbiol , vol.61 , pp. 503-528
    • Arp, D.J.1    Chain, P.S.G.2    Klotz, M.G.3
  • 3
    • 33847216554 scopus 로고    scopus 로고
    • Response of Nitrosospira sp. strain AF-like ammonia oxidizers to changes in temperature, soil moisture content, and fertilizer concentration
    • Avrahami, S., and B. J. A. Bohannan. 2007. Response of Nitrosospira sp. strain AF-like ammonia oxidizers to changes in temperature, soil moisture content, and fertilizer concentration. Appl. Environ. Microbiol. 73:1166-1173.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 1166-1173
    • Avrahami, S.1    Bohannan, B.J.A.2
  • 4
    • 0042197522 scopus 로고    scopus 로고
    • Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers
    • Avrahami, S., W. Liesack, and R. Conrad. 2003. Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers. Environ. Microbiol. 5:691-705.
    • (2003) Environ. Microbiol , vol.5 , pp. 691-705
    • Avrahami, S.1    Liesack, W.2    Conrad, R.3
  • 5
    • 84920012307 scopus 로고    scopus 로고
    • Structural and functional relationships in prokaryotes
    • Inc, New York, NY
    • Barton, L. L. 2005. Structural and functional relationships in prokaryotes. Springer Science+Business Media, Inc., New York, NY.
    • (2005) Springer Science+Business Media
    • Barton, L.L.1
  • 6
    • 14944379569 scopus 로고    scopus 로고
    • Spectroscopic and density functional studies of the red copper site in nitrosocyanin: Role of the protein in determining active site geometric and electronic structure
    • Basumallick, L., R. Sarangi, S. D. George, B. Elmore, A. B. Hooper, B. Hedman, K. O. Hodgson, and E. I. Solomon. 2005. Spectroscopic and density functional studies of the red copper site in nitrosocyanin: role of the protein in determining active site geometric and electronic structure. J. Am. Chem. Soc. 127:3531-3544.
    • (2005) J. Am. Chem. Soc , vol.127 , pp. 3531-3544
    • Basumallick, L.1    Sarangi, R.2    George, S.D.3    Elmore, B.4    Hooper, A.B.5    Hedman, B.6    Hodgson, K.O.7    Solomon, E.I.8
  • 8
    • 4744352703 scopus 로고    scopus 로고
    • Expression of nitrite reductase in Nitrosomonas europaea involves NsrR, a novel nitrite-sensitive transcription repressor
    • Beaumont, H. J. E., S. I. Lens, W. N. M. Reijnders, H. V. Westerhoff, and R. J. M. van Spanning. 2004. Expression of nitrite reductase in Nitrosomonas europaea involves NsrR, a novel nitrite-sensitive transcription repressor. Mol. Microbiol. 54:148-158.
    • (2004) Mol. Microbiol , vol.54 , pp. 148-158
    • Beaumont, H.J.E.1    Lens, S.I.2    Reijnders, W.N.M.3    Westerhoff, H.V.4    van Spanning, R.J.M.5
  • 9
    • 34249801778 scopus 로고    scopus 로고
    • Transcription of all amoC copies is associated with recovery of Nitrosomonas europaea from ammonia starvation
    • Beruhe, P. M., R. Samudrala, and D. A. Stahl. 2007. Transcription of all amoC copies is associated with recovery of Nitrosomonas europaea from ammonia starvation. J. Bacteriol. 189:3935-3944.
    • (2007) J. Bacteriol , vol.189 , pp. 3935-3944
    • Beruhe, P.M.1    Samudrala, R.2    Stahl, D.A.3
  • 10
    • 0029832336 scopus 로고    scopus 로고
    • Dynamics of nitrification and denitrification in root-oxygenated sediments and adaptation of ammonia-oxidizing bacteria to low-oxygen or anoxic habitats
    • Bodelier, P. L. E., J. A. Libochant, C. Blom, and H. J. Laanbroek. 1996. Dynamics of nitrification and denitrification in root-oxygenated sediments and adaptation of ammonia-oxidizing bacteria to low-oxygen or anoxic habitats. Appl. Environ. Microbiol. 62:4100-4107.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 4100-4107
    • Bodelier, P.L.E.1    Libochant, J.A.2    Blom, C.3    Laanbroek, H.J.4
  • 11
    • 0032844737 scopus 로고    scopus 로고
    • Gene descent, duplication, and horizontal transfer in the evolution of glutamyl- and glutaminyl-tRNA synthetases
    • Brown, J. R., and W. F. Doolittle. 1999. Gene descent, duplication, and horizontal transfer in the evolution of glutamyl- and glutaminyl-tRNA synthetases. J. Mol. Evol. 49:485-495.
    • (1999) J. Mol. Evol , vol.49 , pp. 485-495
    • Brown, J.R.1    Doolittle, W.F.2
  • 12
    • 0033015223 scopus 로고    scopus 로고
    • Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
    • Bruns, M. A., J. R. Stephen, G. A. Kowalchuk, J. I. Prosser, and E. A. Paul. 1999. Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils. Appl. Environ. Microbiol. 65:2994-3000.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 2994-3000
    • Bruns, M.A.1    Stephen, J.R.2    Kowalchuk, G.A.3    Prosser, J.I.4    Paul, E.A.5
  • 13
    • 23744473854 scopus 로고    scopus 로고
    • Identification of acyl-homoserine lactone signal molecules produced by Nitrosomonas europaea strain Schmidt
    • Burton, E. O., H. W. Read, M. C. Pellitteri, and W. J. Hickey. 2005. Identification of acyl-homoserine lactone signal molecules produced by Nitrosomonas europaea strain Schmidt. Appl. Environ. Microbiol. 71:4906-4909.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 4906-4909
    • Burton, E.O.1    Read, H.W.2    Pellitteri, M.C.3    Hickey, W.J.4
  • 14
    • 0035408582 scopus 로고    scopus 로고
    • Autotrophic ammonia oxidation at low pH through urea hydrolysis
    • Burton, S. A. Q., and J. I. Prosser. 2001. Autotrophic ammonia oxidation at low pH through urea hydrolysis. Appl. Environ. Microbiol. 67:2952-2957.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 2952-2957
    • Burton, S.A.Q.1    Prosser, J.I.2
  • 15
    • 33846987885 scopus 로고    scopus 로고
    • Molecular diversity of nitrite reductase genes (nirK) in nitrifying bacteria
    • Cantera, J. J. L., and L. Y. Stein. 2007. Molecular diversity of nitrite reductase genes (nirK) in nitrifying bacteria. Environ. Microbiol. 9:765-776.
    • (2007) Environ. Microbiol , vol.9 , pp. 765-776
    • Cantera, J.J.L.1    Stein, L.Y.2
  • 17
    • 33750283857 scopus 로고    scopus 로고
    • Chain, P. S. G., V. J. Denef, K. T. Konstantinidis, L. M. Vergez, L. Agullo, V. L. Reyes, L. Hauser, M. Cordova, L. Gomez, M. Gonzalez, M. Land, V. Lao, F. Larimer, J. J. Lipuma, E. Mahenthiralingam, S. A. Malfatti, C. J. Marx, J. J. Parnell, A. Ramette, P. Richardson, M. Seeger, D. Smith, T. Spilker, W. J. Sul, T. V. Tsoi, L. E. Ulrich, I. B. Zhulin, and J. M. Tiedje. 2006. Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc. Natl. Acad. Sci. USA 103:15280-15287.
    • Chain, P. S. G., V. J. Denef, K. T. Konstantinidis, L. M. Vergez, L. Agullo, V. L. Reyes, L. Hauser, M. Cordova, L. Gomez, M. Gonzalez, M. Land, V. Lao, F. Larimer, J. J. Lipuma, E. Mahenthiralingam, S. A. Malfatti, C. J. Marx, J. J. Parnell, A. Ramette, P. Richardson, M. Seeger, D. Smith, T. Spilker, W. J. Sul, T. V. Tsoi, L. E. Ulrich, I. B. Zhulin, and J. M. Tiedje. 2006. Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc. Natl. Acad. Sci. USA 103:15280-15287.
  • 18
    • 33745172807 scopus 로고    scopus 로고
    • Transcriptome of a Nitrosomonas europaea mutant with a disrupted nitrite reductase gene (nirK)
    • Cho, C. M. H., T. F. Yan, X. D. Liu, L. Y. Wu, J. Z. Zhou, and L. Y. Stein. 2006. Transcriptome of a Nitrosomonas europaea mutant with a disrupted nitrite reductase gene (nirK). Appl. Environ. Microbiol. 72:4450-4454.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 4450-4454
    • Cho, C.M.H.1    Yan, T.F.2    Liu, X.D.3    Wu, L.Y.4    Zhou, J.Z.5    Stein, L.Y.6
  • 19
    • 0001973467 scopus 로고    scopus 로고
    • Carbohydrate-active enzymes: An integrated database approach
    • G. D. H. J. Gilbert, B. Henrissat, and B. Svensson ed, The Royal Society of Chemistry, Cambridge, United Kingdom
    • Coutinho, P. M., and B. Henrissat. 1999. Carbohydrate-active enzymes: an integrated database approach, p. 3-12. In G. D. H. J. Gilbert, B. Henrissat, and B. Svensson (ed.), Recent advances in carbohydrate bioengineering. The Royal Society of Chemistry, Cambridge, United Kingdom.
    • (1999) Recent advances in carbohydrate bioengineering , pp. 3-12
    • Coutinho, P.M.1    Henrissat, B.2
  • 20
    • 0035910125 scopus 로고    scopus 로고
    • Molecular characterization of structural genes coding for a membrane bound hydrogenase in Methylococcus capsulatus (Bath)
    • Csaki, R., T. Hanczar, L. Bodrossy, J. C. Murrell, and K. L. Kovacs. 2001. Molecular characterization of structural genes coding for a membrane bound hydrogenase in Methylococcus capsulatus (Bath). FEMS Microbiol. Lett. 205:203-207.
    • (2001) FEMS Microbiol. Lett , vol.205 , pp. 203-207
    • Csaki, R.1    Hanczar, T.2    Bodrossy, L.3    Murrell, J.C.4    Kovacs, K.L.5
  • 21
    • 0034973916 scopus 로고    scopus 로고
    • Nitrification in acid soils: Microorganisms and mechanisms
    • De Boer, W., and G. A. Kowalchuk. 2001. Nitrification in acid soils: microorganisms and mechanisms. Soil Biol. Biochem. 33:853-866.
    • (2001) Soil Biol. Biochem , vol.33 , pp. 853-866
    • De Boer, W.1    Kowalchuk, G.A.2
  • 22
    • 33645836299 scopus 로고    scopus 로고
    • Lipid trafficking to the outer membrane of Gram-negative bacteria
    • Doerrler, W. T. 2006. Lipid trafficking to the outer membrane of Gram-negative bacteria. Mol. Microbiol. 60:542-552.
    • (2006) Mol. Microbiol , vol.60 , pp. 542-552
    • Doerrler, W.T.1
  • 23
    • 0034846841 scopus 로고    scopus 로고
    • Different sensitivities to oxygen of nitrous oxide production by Nitrosomonas europaea and Nttrosolobus multiformis
    • Dundee, L., and D. W. Hopkins. 2001. Different sensitivities to oxygen of nitrous oxide production by Nitrosomonas europaea and Nttrosolobus multiformis. Soil Biol. Biochem. 33:1563-1565.
    • (2001) Soil Biol. Biochem , vol.33 , pp. 1563-1565
    • Dundee, L.1    Hopkins, D.W.2
  • 24
    • 37849016357 scopus 로고    scopus 로고
    • Characterization of two new genes, amoR and amoD, in the amo operon of the marine ammonia oxidizer Nitrosococcus oceani ATCC 19707
    • El Sheikh, A. F., A. T. Poret-Peterson, and M. G. Klotz. 2008. Characterization of two new genes, amoR and amoD, in the amo operon of the marine ammonia oxidizer Nitrosococcus oceani ATCC 19707. Appl. Environ. Microbiol. 74:312-318.
    • (2008) Appl. Environ. Microbiol , vol.74 , pp. 312-318
    • El Sheikh, A.F.1    Poret-Peterson, A.T.2    Klotz, M.G.3
  • 25
    • 23944523895 scopus 로고    scopus 로고
    • A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts
    • Galperin, M. Y. 2005. A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts. BMC Microbiol. 5:35.
    • (2005) BMC Microbiol , vol.5 , pp. 35
    • Galperin, M.Y.1
  • 26
    • 30744445225 scopus 로고    scopus 로고
    • Specificity of acyl-homoserine lactone synthases examined by mass spectrometry
    • Gould, T. A., J. Herman, J. Krank, R. C. Murphy, and M. E. A. Churchill. 2006. Specificity of acyl-homoserine lactone synthases examined by mass spectrometry. J. Bacteriol. 188:773-783.
    • (2006) J. Bacteriol , vol.188 , pp. 773-783
    • Gould, T.A.1    Herman, J.2    Krank, J.3    Murphy, R.C.4    Churchill, M.E.A.5
  • 28
    • 33748882527 scopus 로고    scopus 로고
    • Exopolysaccharide-associated protein sorting in environmental organisms: The PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic
    • Haft, D. H., I. T. Paulsen, N. Ward, and J. D. Selengut. 2006. Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic. BMC Biol. 4:16.
    • (2006) BMC Biol , vol.4 , pp. 16
    • Haft, D.H.1    Paulsen, I.T.2    Ward, N.3    Selengut, J.D.4
  • 29
    • 0036166885 scopus 로고    scopus 로고
    • Detection and localization of two hydrogenases in Methylococcus capsulatus (Bath) and their potential role in methane metabolism
    • Hanczar, T., R. Csaki, L. Bodrossy, J. C. Murrell, and K. L. Kovacs. 2002. Detection and localization of two hydrogenases in Methylococcus capsulatus (Bath) and their potential role in methane metabolism. Arch. Microbiol. 177:167-172.
    • (2002) Arch. Microbiol , vol.177 , pp. 167-172
    • Hanczar, T.1    Csaki, R.2    Bodrossy, L.3    Murrell, J.C.4    Kovacs, K.L.5
  • 30
    • 34347379742 scopus 로고    scopus 로고
    • Characterization of a Pseudomonas putida rough variant evolved in a mixed-species biofilm with Acinetobacter sp. strain C6
    • Hansen, S. K., J. A. J. Haagensen, M. Gjermansen, T. M. Jorgensen, T. Tolker-Nielsen, and S. Molin. 2007. Characterization of a Pseudomonas putida rough variant evolved in a mixed-species biofilm with Acinetobacter sp. strain C6. J. Bacteriol. 189:4932-4943.
    • (2007) J. Bacteriol , vol.189 , pp. 4932-4943
    • Hansen, S.K.1    Haagensen, J.A.J.2    Gjermansen, M.3    Jorgensen, T.M.4    Tolker-Nielsen, T.5    Molin, S.6
  • 31
    • 33644912328 scopus 로고    scopus 로고
    • Disruption of sucA, which encodes the E1 subunit of α-ketoglutarate dehydrogenase, affects the survival of Nitrosomonas europaea in stationary phase
    • Hommes, N. G., E. G. Kurth, L. A. Sayavedra-Soto, and D. J. Arp. 2006. Disruption of sucA, which encodes the E1 subunit of α-ketoglutarate dehydrogenase, affects the survival of Nitrosomonas europaea in stationary phase. J. Bacteriol. 188:343-347.
    • (2006) J. Bacteriol , vol.188 , pp. 343-347
    • Hommes, N.G.1    Kurth, E.G.2    Sayavedra-Soto, L.A.3    Arp, D.J.4
  • 32
    • 0344393479 scopus 로고    scopus 로고
    • Chemolithoorganotrophic growth of Nitrosomonas europaea on fructose
    • Hommes, N. G., L. A. Sayavedra-Soto, and D. J. Arp. 2003. Chemolithoorganotrophic growth of Nitrosomonas europaea on fructose. J. Bacteriol. 185:6809-6814.
    • (2003) J. Bacteriol , vol.185 , pp. 6809-6814
    • Hommes, N.G.1    Sayavedra-Soto, L.A.2    Arp, D.J.3
  • 33
    • 15644373219 scopus 로고    scopus 로고
    • Mutagenesis and expression of amo, which codes for ammonia monooxygenase in Nitrosomonas europaea
    • Hommes, N. G., L. A. Sayavedra-Soto, and D. J. Arp. 1998. Mutagenesis and expression of amo, which codes for ammonia monooxygenase in Nitrosomonas europaea. J. Bacteriol. 180:3353-3359.
    • (1998) J. Bacteriol , vol.180 , pp. 3353-3359
    • Hommes, N.G.1    Sayavedra-Soto, L.A.2    Arp, D.J.3
  • 34
    • 1942476071 scopus 로고    scopus 로고
    • Enzymatic characterization of a prokaryotic urea carboxylase
    • Kanamori, T., N. Kanou, H. Atomi, and T. Imanaka. 2004. Enzymatic characterization of a prokaryotic urea carboxylase. J. Bacteriol. 186:2532-2539.
    • (2004) J. Bacteriol , vol.186 , pp. 2532-2539
    • Kanamori, T.1    Kanou, N.2    Atomi, H.3    Imanaka, T.4
  • 35
    • 18044393883 scopus 로고    scopus 로고
    • Insights into the obligate methanotroph Methylococcus capsulatus
    • Kelly, D. P., C. Anthony, and J. C. Murrell. 2005. Insights into the obligate methanotroph Methylococcus capsulatus. Trends Microbiol. 13:195-198.
    • (2005) Trends Microbiol , vol.13 , pp. 195-198
    • Kelly, D.P.1    Anthony, C.2    Murrell, J.C.3
  • 36
    • 34447499141 scopus 로고    scopus 로고
    • Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake
    • Kingsford, C. L., K. Ayanbule, and S. L. Salzberg. 2007. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. Genome Biol. 8:R22.
    • (2007) Genome Biol , vol.8
    • Kingsford, C.L.1    Ayanbule, K.2    Salzberg, S.L.3
  • 38
    • 37249025200 scopus 로고    scopus 로고
    • Nitrifier genomics and evolution of the nitrogen cycle
    • Klotz, M. G., and L. Y. Stein. 2008. Nitrifier genomics and evolution of the nitrogen cycle. FEMS Microbiol. Lett. 278:146-156.
    • (2008) FEMS Microbiol. Lett , vol.278 , pp. 146-156
    • Klotz, M.G.1    Stein, L.Y.2
  • 39
    • 1542327668 scopus 로고    scopus 로고
    • Trends between gene content and genome size in prokaryotic species with larger genomes
    • Konstantinidis, K. T., and J. M. Tiedje. 2004. Trends between gene content and genome size in prokaryotic species with larger genomes. Proc. Natl. Acad. Sci. USA 101:3160-3165.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 3160-3165
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 41
    • 0034775280 scopus 로고    scopus 로고
    • Ammonia-oxidizing bacteria: A model for molecular microbial ecology
    • Kowalchuk, G. A., and J. R. Stephen. 2001. Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu. Rev. Microbiol. 55:485-529.
    • (2001) Annu. Rev. Microbiol , vol.55 , pp. 485-529
    • Kowalchuk, G.A.1    Stephen, J.R.2
  • 42
    • 33646507082 scopus 로고    scopus 로고
    • Osmoregulation in bacteria: Compatible solute accumulation and osmosensing
    • Kunte, H. J. 2006. Osmoregulation in bacteria: compatible solute accumulation and osmosensing. Environ. Chem. 3:94-99.
    • (2006) Environ. Chem , vol.3 , pp. 94-99
    • Kunte, H.J.1
  • 44
    • 0036010499 scopus 로고    scopus 로고
    • Evolution of sucrose synthesis
    • Lunn, J. E. 2002. Evolution of sucrose synthesis. Plant Physiol. 128:1490-1500.
    • (2002) Plant Physiol , vol.128 , pp. 1490-1500
    • Lunn, J.E.1
  • 45
    • 0036794643 scopus 로고    scopus 로고
    • Changes in the population structure of beta-group autotrophic ammonia oxidising bacteria in arable soils in response to agricultural practice
    • Mendum, T. A., and P. R. Hirsch. 2002. Changes in the population structure of beta-group autotrophic ammonia oxidising bacteria in arable soils in response to agricultural practice. Soil Biol. Biochem. 34:1479-1485.
    • (2002) Soil Biol. Biochem , vol.34 , pp. 1479-1485
    • Mendum, T.A.1    Hirsch, P.R.2
  • 46
    • 0037022651 scopus 로고    scopus 로고
    • Min, B., J. T. Pelaschier, D. E. Graham, D. Tumbula-Hansen, and D. Soil. 2002. Transfer RNA-dependent amino acid biosynthesis: an essential route to asparagine formation. Proc. Natl. Acad. Sci. USA 99:2678-2683.
    • Min, B., J. T. Pelaschier, D. E. Graham, D. Tumbula-Hansen, and D. Soil. 2002. Transfer RNA-dependent amino acid biosynthesis: an essential route to asparagine formation. Proc. Natl. Acad. Sci. USA 99:2678-2683.
  • 47
    • 0347519333 scopus 로고    scopus 로고
    • The urea transporter (UT) family: Bioinformatic analyses leading to structural, functional, and evolutionary predictions
    • Minocha, R., K. Studley, and M. H. Saier. 2003. The urea transporter (UT) family: bioinformatic analyses leading to structural, functional, and evolutionary predictions. Receptors Channels 9:345-352.
    • (2003) Receptors Channels , vol.9 , pp. 345-352
    • Minocha, R.1    Studley, K.2    Saier, M.H.3
  • 48
    • 0037351889 scopus 로고    scopus 로고
    • Identification of the putrescine biosynthetic genes in Pseudomonas aeruginosa and characterization of agmatine deiminase and N-carbamoylputrescine amidohydrolase of the arginine decarboxylase pathway
    • Nakada, Y., and Y. Itoh. 2003. Identification of the putrescine biosynthetic genes in Pseudomonas aeruginosa and characterization of agmatine deiminase and N-carbamoylputrescine amidohydrolase of the arginine decarboxylase pathway. Microbiology 149:707-714.
    • (2003) Microbiology , vol.149 , pp. 707-714
    • Nakada, Y.1    Itoh, Y.2
  • 49
    • 0032969566 scopus 로고    scopus 로고
    • Surface proteins of gram-positive bacteria and mechanisms of their targeting to the cell wall envelope
    • Navarre, W. W., and O. Schneewind. 1999. Surface proteins of gram-positive bacteria and mechanisms of their targeting to the cell wall envelope. Microbiol. Mol. Biol. Rev. 63:174-229.
    • (1999) Microbiol. Mol. Biol. Rev , vol.63 , pp. 174-229
    • Navarre, W.W.1    Schneewind, O.2
  • 50
    • 0036167265 scopus 로고    scopus 로고
    • Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria
    • Norton, J. M., J. J. Alzerreca, Y. Suwa, and M. G. Klotz. 2002. Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria. Arch. Microbiol. 177:139-149.
    • (2002) Arch. Microbiol , vol.177 , pp. 139-149
    • Norton, J.M.1    Alzerreca, J.J.2    Suwa, Y.3    Klotz, M.G.4
  • 51
    • 13444293188 scopus 로고    scopus 로고
    • Environmental pH as an important factor for the distribution of urease positive ammonia-oxidizing bacteria
    • Pommerening-Roser, A., and H. P. Koops. 2005. Environmental pH as an important factor for the distribution of urease positive ammonia-oxidizing bacteria. Microbiol. Res. 160:27-35.
    • (2005) Microbiol. Res , vol.160 , pp. 27-35
    • Pommerening-Roser, A.1    Koops, H.P.2
  • 52
    • 0036427445 scopus 로고    scopus 로고
    • Cultivation-based and molecular approaches to characterisation of terrestrial and aquatic nitrifiers
    • Prosser, J. L., and T. M. Embley. 2002. Cultivation-based and molecular approaches to characterisation of terrestrial and aquatic nitrifiers. Antonie van Leeuwenhoek 81:165-179.
    • (2002) Antonie van Leeuwenhoek , vol.81 , pp. 165-179
    • Prosser, J.L.1    Embley, T.M.2
  • 53
    • 0038689220 scopus 로고    scopus 로고
    • Genomics of pyoverdine-mediated iron uptake in pseudomonads
    • Ravel, J., and P. Cornelis. 2003. Genomics of pyoverdine-mediated iron uptake in pseudomonads. Trends Microbiol. 11:195-200.
    • (2003) Trends Microbiol , vol.11 , pp. 195-200
    • Ravel, J.1    Cornelis, P.2
  • 54
    • 20544453320 scopus 로고    scopus 로고
    • Unraveling the secret lives of bacteria: Use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression
    • Rediers, H., P. B. Rainey, J. Vanderleyden, and R. De Mot. 2005. Unraveling the secret lives of bacteria: use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression. Microbiol. Mol. Biol. Rev. 69:217-261.
    • (2005) Microbiol. Mol. Biol. Rev , vol.69 , pp. 217-261
    • Rediers, H.1    Rainey, P.B.2    Vanderleyden, J.3    De Mot, R.4
  • 55
    • 85044710067 scopus 로고    scopus 로고
    • Rodionov, D. A., I. L. Dubchak, A. P. Arkin, E. J. Alm, and M. S. Gelfand. 2005. Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks. PLoS Comp. Biol. 1:415-431.
    • Rodionov, D. A., I. L. Dubchak, A. P. Arkin, E. J. Alm, and M. S. Gelfand. 2005. Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks. PLoS Comp. Biol. 1:415-431.
  • 56
    • 0031747821 scopus 로고    scopus 로고
    • Transcriptional regulation of Alcaligenes eutrophus hydrogenase genes
    • Schwartz, E., U. Gerischer, and B. Friedrich. 1998. Transcriptional regulation of Alcaligenes eutrophus hydrogenase genes. J. Bacteriol. 180:3197-3204.
    • (1998) J. Bacteriol , vol.180 , pp. 3197-3204
    • Schwartz, E.1    Gerischer, U.2    Friedrich, B.3
  • 57
    • 18944379412 scopus 로고    scopus 로고
    • Purification and characterization of allophanate hydrolase (AtzF) from Pseudomonas sp. strain ADP
    • Shapir, N., M. J. Sadowsky, and L. P. Wackett. 2005. Purification and characterization of allophanate hydrolase (AtzF) from Pseudomonas sp. strain ADP. J. Bacteriol. 187:3731-3738.
    • (2005) J. Bacteriol , vol.187 , pp. 3731-3738
    • Shapir, N.1    Sadowsky, M.J.2    Wackett, L.P.3
  • 58
    • 33644851085 scopus 로고    scopus 로고
    • Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway
    • Shaw, L. J., G. W. Nicol, Z. Smith, J. Fear, J. I. Prosser, and E. M. Baggs. 2006. Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway. Environ. Microbiol. 8:214-222.
    • (2006) Environ. Microbiol , vol.8 , pp. 214-222
    • Shaw, L.J.1    Nicol, G.W.2    Smith, Z.3    Fear, J.4    Prosser, J.I.5    Baggs, E.M.6
  • 59
    • 0031752797 scopus 로고    scopus 로고
    • Something from almost nothing: Carbon dioxide fixation in chemoautotrophs
    • Shively, J. M., G. van Keulen, and W. G. Meijer. 1998. Something from almost nothing: carbon dioxide fixation in chemoautotrophs. Annu. Rev. Microbiol. 52:191-230.
    • (1998) Annu. Rev. Microbiol , vol.52 , pp. 191-230
    • Shively, J.M.1    van Keulen, G.2    Meijer, W.G.3
  • 60
    • 0037197886 scopus 로고    scopus 로고
    • The identification of functional modules from the genomic association of genes
    • Snel, B., P. Bork, and M. A. Huynen. 2002. The identification of functional modules from the genomic association of genes. Proc. Natl. Acad. Sci. USA 99:5890-5895.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 5890-5895
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 61
    • 0028893686 scopus 로고
    • Mechanisms for soil moisture effects on activity of nitrifying bacteria
    • Stark, J. M., and M. K. Firestone. 1995. Mechanisms for soil moisture effects on activity of nitrifying bacteria. Appl. Environ. Microbiol. 61:218-221.
    • (1995) Appl. Environ. Microbiol , vol.61 , pp. 218-221
    • Stark, J.M.1    Firestone, M.K.2
  • 62
    • 0033756225 scopus 로고    scopus 로고
    • MJ0109 is an enzyme that is both an inositol monophosphatase and the 'missing' archaeal fructose1,6-bisphosphatase
    • Stec, B., H. Y. Yang, K. A. Johnson, L. J. Chen, and M. F. Roberts. 2000. MJ0109 is an enzyme that is both an inositol monophosphatase and the 'missing' archaeal fructose1,6-bisphosphatase. Nat. Struct. Biol. 7:1046-1050.
    • (2000) Nat. Struct. Biol , vol.7 , pp. 1046-1050
    • Stec, B.1    Yang, H.Y.2    Johnson, K.A.3    Chen, L.J.4    Roberts, M.F.5
  • 64
    • 0029805297 scopus 로고    scopus 로고
    • Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria
    • Stephen, J. R., A. E. McCaig, Z. Smith, J. I. Prosser, and T. M. Embley. 1996. Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria. Appl. Environ. Microbiol. 62:4147-4154.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 4147-4154
    • Stephen, J.R.1    McCaig, A.E.2    Smith, Z.3    Prosser, J.I.4    Embley, T.M.5
  • 65
    • 37349069540 scopus 로고    scopus 로고
    • Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs
    • Tabita, F. R., T. E. Hanson, H. Li, S. Satagopan, J. Singh, and S. Chan. 2007. Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs. Microbiol. Mol. Biol. Rev. 71:576-599.
    • (2007) Microbiol. Mol. Biol. Rev , vol.71 , pp. 576-599
    • Tabita, F.R.1    Hanson, T.E.2    Li, H.3    Satagopan, S.4    Singh, J.5    Chan, S.6
  • 66
    • 0036098796 scopus 로고    scopus 로고
    • Osmoregulated periplasmic glucans of the free-living photosynthetic bacterium Rhodobacter sphaeroides
    • Talaga, P., V. Cogez, J. M. Wieruszeski, B. Stahl, J. Lemoine, G. Lippens, and J. P. Bohin. 2002. Osmoregulated periplasmic glucans of the free-living photosynthetic bacterium Rhodobacter sphaeroides. Eur. J. Biochem. 269:2464-2472.
    • (2002) Eur. J. Biochem , vol.269 , pp. 2464-2472
    • Talaga, P.1    Cogez, V.2    Wieruszeski, J.M.3    Stahl, B.4    Lemoine, J.5    Lippens, G.6    Bohin, J.P.7
  • 67
    • 0036135688 scopus 로고    scopus 로고
    • Phylogeny and functional expression of ribulose 1,5-bisphosphate carboxylase/oxygenase from the autotrophic ammonia-oxidizing bacterium Nitrosospira sp. isolate 40KI
    • Utåker, J. B., K. Andersen, A. Aakra, B. Moen, and I. F. Nes. 2002. Phylogeny and functional expression of ribulose 1,5-bisphosphate carboxylase/oxygenase from the autotrophic ammonia-oxidizing bacterium Nitrosospira sp. isolate 40KI. J. Bacteriol. 184:468-478.
    • (2002) J. Bacteriol , vol.184 , pp. 468-478
    • Utåker, J.B.1    Andersen, K.2    Aakra, A.3    Moen, B.4    Nes, I.F.5
  • 68
    • 15044359593 scopus 로고    scopus 로고
    • Structure-function studies on the complex iron-sulfur flavoprotein glutamate synthase: The key enzyme of ammonia assimilation
    • Vanoni, M. A., L. Dossena, R. H. H. van den Heuvel, and B. Curti. 2005. Structure-function studies on the complex iron-sulfur flavoprotein glutamate synthase: the key enzyme of ammonia assimilation. Photosynthesis Res. 83:219-238.
    • (2005) Photosynthesis Res , vol.83 , pp. 219-238
    • Vanoni, M.A.1    Dossena, L.2    van den Heuvel, R.H.H.3    Curti, B.4
  • 69
    • 0034886919 scopus 로고    scopus 로고
    • Classification and phylogeny of hydrogenases
    • Vignais, P. M., B. Billoud, and J. Meyer. 2001. Classification and phylogeny of hydrogenases. FEMS Microbiol. Rev. 25:455-501.
    • (2001) FEMS Microbiol. Rev , vol.25 , pp. 455-501
    • Vignais, P.M.1    Billoud, B.2    Meyer, J.3
  • 70
    • 15444367621 scopus 로고    scopus 로고
    • Rapid acyl-homoserine lactone quorum signal biodegradation in diverse soils
    • Wang, Y. J., and J. R. Leadbetter. 2005. Rapid acyl-homoserine lactone quorum signal biodegradation in diverse soils. Appl. Environ. Microbiol. 71:1291-1299.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1291-1299
    • Wang, Y.J.1    Leadbetter, J.R.2
  • 71
    • 0014986070 scopus 로고
    • A lobular, ammonia-oxidizing bacterium
    • nov. gen. nov. sp. Arch. Microbiol
    • Watson, S. W., L. B. Graham, C. C. Remsen, and F. W. Valois. 1971. A lobular, ammonia-oxidizing bacterium, Nitrosolobus multiformis nov. gen. nov. sp. Arch. Microbiol. 76:183-203.
    • (1971) Nitrosolobus multiformis , vol.76 , pp. 183-203
    • Watson, S.W.1    Graham, L.B.2    Remsen, C.C.3    Valois, F.W.4
  • 72
    • 0036204586 scopus 로고    scopus 로고
    • Structural basis and specificity of acyl-homoserine lactone signal production in bacterial quorum sensing
    • Watson, W. T., T. D. Minogue, D. L. Val, S. B. von Bodman, and M. E. A. Churchill. 2002. Structural basis and specificity of acyl-homoserine lactone signal production in bacterial quorum sensing. Mol. Cell 9:685-694.
    • (2002) Mol. Cell , vol.9 , pp. 685-694
    • Watson, W.T.1    Minogue, T.D.2    Val, D.L.3    von Bodman, S.B.4    Churchill, M.E.A.5
  • 73
    • 3142678008 scopus 로고    scopus 로고
    • The transcription of the cbb operon in Nitrosomonas europaea
    • Wei, X. M., L. A. Sayavedra-Soto, and D. J. Arp. 2004. The transcription of the cbb operon in Nitrosomonas europaea. Microbiology 150:1869-1879.
    • (2004) Microbiology , vol.150 , pp. 1869-1879
    • Wei, X.M.1    Sayavedra-Soto, L.A.2    Arp, D.J.3
  • 74
    • 2642562680 scopus 로고    scopus 로고
    • A challenge for 21st century molecular biology and biochemistry: What are the causes of obligate autotrophy and methanotrophy?
    • Wood, A., J. Aurikko, and D. Kelly. 2004. A challenge for 21st century molecular biology and biochemistry: what are the causes of obligate autotrophy and methanotrophy? FEMS Microbiol. Rev. 28:335-352.
    • (2004) FEMS Microbiol. Rev , vol.28 , pp. 335-352
    • Wood, A.1    Aurikko, J.2    Kelly, D.3
  • 75
    • 0033020407 scopus 로고    scopus 로고
    • A probable mixed-function supraoperon in Pseudomonas exhibits gene organization features of both intergenomic conservation and gene shuffling
    • Xie, G., C. A. Bonner, and R. A. Jensen. 1999. A probable mixed-function supraoperon in Pseudomonas exhibits gene organization features of both intergenomic conservation and gene shuffling. J. Mol. Evol. 49:108-121.
    • (1999) J. Mol. Evol , vol.49 , pp. 108-121
    • Xie, G.1    Bonner, C.A.2    Jensen, R.A.3
  • 76
    • 0037291906 scopus 로고    scopus 로고
    • Genes involved in the synthesis of the cxopolysaccharide methanolan by the obligate methylotroph Methylobacillus sp. strain 12S
    • Yoshida, T., Y. Ayabe, M. Yasunaga, Y. Usami, H. Habe, H. Nojiri, and T. Omori. 2003. Genes involved in the synthesis of the cxopolysaccharide methanolan by the obligate methylotroph Methylobacillus sp. strain 12S. Microbiology 149:431-444.
    • (2003) Microbiology , vol.149 , pp. 431-444
    • Yoshida, T.1    Ayabe, Y.2    Yasunaga, M.3    Usami, Y.4    Habe, H.5    Nojiri, H.6    Omori, T.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.