-
1
-
-
0000148162
-
Regulation of chromosomally mediated multiple antibiotic resistance: The mar regulon
-
Alekshun, M.N. Levy, S.B. (1997) Regulation of chromosomally mediated multiple antibiotic resistance: the mar regulon. Antimicrob Agents Chemother 41 : 2067 2075.
-
(1997)
Antimicrob Agents Chemother
, vol.41
, pp. 2067-2075
-
-
Alekshun, M.N.1
Levy, S.B.2
-
2
-
-
0345863540
-
Metabolism of inorganic N compounds by ammonia-oxidizing bacteria
-
Arp, D.J. Stein, L.Y. (2003) Metabolism of inorganic N compounds by ammonia-oxidizing bacteria. Crit Rev Biochem Mol Biol 38 : 471 495.
-
(2003)
Crit Rev Biochem Mol Biol
, vol.38
, pp. 471-495
-
-
Arp, D.J.1
Stein, L.Y.2
-
3
-
-
35848950017
-
The impact of genome analyses on our understanding of ammonia-oxidizing bacteria
-
Arp, D.J., Chain, P.S.G. Klotz, M.G. (2007) The impact of genome analyses on our understanding of ammonia-oxidizing bacteria. Annu Rev Microbiol 61 : 503 528.
-
(2007)
Annu Rev Microbiol
, vol.61
, pp. 503-528
-
-
Arp, D.J.1
Chain, P.S.G.2
Klotz, M.G.3
-
4
-
-
0038240633
-
Bacterial mercury resistance from atoms to ecosystems
-
Barkay, T., Miller, S.M. Summers, A.O. (2003) Bacterial mercury resistance from atoms to ecosystems. FEMS Microbiol Rev 27 : 355 384.
-
(2003)
FEMS Microbiol Rev
, vol.27
, pp. 355-384
-
-
Barkay, T.1
Miller, S.M.2
Summers, A.O.3
-
5
-
-
4744352703
-
Expression of nitrite reductase in Nitrosomonas europaea involves NsrR, a novel nitrite sensitive transcription repressor
-
Beaumont, H.J.E., Lens, S.I., Reijnders, W.N.M., Westerhoff, H.V. van Spanning, R.J.M. (2004) Expression of nitrite reductase in Nitrosomonas europaea involves NsrR, a novel nitrite sensitive transcription repressor. Mol Microbiol 54 : 148 158.
-
(2004)
Mol Microbiol
, vol.54
, pp. 148-158
-
-
Beaumont, H.J.E.1
Lens, S.I.2
Reijnders, W.N.M.3
Westerhoff, H.V.4
Van Spanning, R.J.M.5
-
6
-
-
25144472032
-
Novel nirK cluster genes in Nitrosomonas europaea are required for NirK-dependent tolerance to nitrite
-
Beaumont, H.J.E., Lens, S.I., Westerhoff, H.V. van Spanning, R.J.M. (2005) Novel nirK cluster genes in Nitrosomonas europaea are required for NirK-dependent tolerance to nitrite. J Bacteriol 187 : 6849 6851.
-
(2005)
J Bacteriol
, vol.187
, pp. 6849-6851
-
-
Beaumont, H.J.E.1
Lens, S.I.2
Westerhoff, H.V.3
Van Spanning, R.J.M.4
-
7
-
-
32444438519
-
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans
-
Beller, H.R., Chain, P.S.G., Letain, T.E., Chakicherla, A., Larimer, F.W., Richardson, P.M., et al. (2006) The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans. J Bacteriol 188 : 1473 1488.
-
(2006)
J Bacteriol
, vol.188
, pp. 1473-1488
-
-
Beller, H.R.1
Chain, P.S.G.2
Letain, T.E.3
Chakicherla, A.4
Larimer, F.W.5
Richardson, P.M.6
-
8
-
-
0017705394
-
Nitrate reduction to nitrite, a possible source of nitrite for growth of nitrite-oxidizing bacteria
-
Belser, L.W. (1977) Nitrate reduction to nitrite, a possible source of nitrite for growth of nitrite-oxidizing bacteria. Appl Environ Microbiol 34 : 403 410.
-
(1977)
Appl Environ Microbiol
, vol.34
, pp. 403-410
-
-
Belser, L.W.1
-
9
-
-
33845520639
-
Diversity of ammonia-oxidizing Archaea and Bacteria in the sediments of a hypernutrified subtropical estuary: Bahía del Tóbari, Mexico
-
Beman, J.M. Francis, C.A. (2006) Diversity of ammonia-oxidizing Archaea and Bacteria in the sediments of a hypernutrified subtropical estuary: Bahía del Tóbari, Mexico. Appl Environ Microbiol 72 : 7767 7777.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 7767-7777
-
-
Beman, J.M.1
Francis, C.A.2
-
10
-
-
25144469781
-
Structure and sequence conservation of hao cluster genes of autotrophic ammonia-oxidizing bacteria: Evidence for their evolutionary history
-
Bergmann, D.J., Hooper, A.B. Klotz, M.G. (2005) Structure and sequence conservation of hao cluster genes of autotrophic ammonia-oxidizing bacteria: evidence for their evolutionary history. Appl Environ Microbiol 71 : 5371 5382.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 5371-5382
-
-
Bergmann, D.J.1
Hooper, A.B.2
Klotz, M.G.3
-
11
-
-
0028842086
-
Nitrogen loss caused by denitrifying Nitrosomonas cells using ammonium or hydrogen as electron donors and nitrite as electron acceptor
-
Bock, E. (1995) Nitrogen loss caused by denitrifying Nitrosomonas cells using ammonium or hydrogen as electron donors and nitrite as electron acceptor. Arch Microbiol 163 : 16 20.
-
(1995)
Arch Microbiol
, vol.163
, pp. 16-20
-
-
Bock, E.1
-
12
-
-
31344459536
-
The yjeB (nsrR) gene of Escherichia coli encodes a nitric oxide-sensitive transcriptional regulator
-
Bodenmiller, D.M. Spiro, S. (2006) The yjeB (nsrR) gene of Escherichia coli encodes a nitric oxide-sensitive transcriptional regulator. J Bacteriol 188 : 874 881.
-
(2006)
J Bacteriol
, vol.188
, pp. 874-881
-
-
Bodenmiller, D.M.1
Spiro, S.2
-
13
-
-
0028825790
-
Cloning and characterization of senC, a gene involved in both aerobic respiration and photosynthesis gene expression in Rhodobacter capsulatus
-
Buggy, J. Bauer, C.E. (1995) Cloning and characterization of senC, a gene involved in both aerobic respiration and photosynthesis gene expression in Rhodobacter capsulatus. J Bacteriol 177 : 6958 6965.
-
(1995)
J Bacteriol
, vol.177
, pp. 6958-6965
-
-
Buggy, J.1
Bauer, C.E.2
-
14
-
-
0035653447
-
Microcompartments in prokaryotes: Carboxysomes and related polyhedra
-
Cannon, G.C., Bradburne, C.E., Aldrich, H.C., Baker, S.H., Heinhorst, S. Shively, J.M. (2001) Microcompartments in prokaryotes: carboxysomes and related polyhedra. Appl Environ Microbiol 67 : 5351 5361.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5351-5361
-
-
Cannon, G.C.1
Bradburne, C.E.2
Aldrich, H.C.3
Baker, S.H.4
Heinhorst, S.5
Shively, J.M.6
-
15
-
-
33846987885
-
Molecular diversity of nitrite reductase (nirK) genes in nitrifying bacteria
-
Cantera, J.J.L. Stein, L.Y. (2007) Molecular diversity of nitrite reductase (nirK) genes in nitrifying bacteria. Environ Microbiol 9 : 765 776.
-
(2007)
Environ Microbiol
, vol.9
, pp. 765-776
-
-
Cantera, J.J.L.1
Stein, L.Y.2
-
16
-
-
0036305159
-
Nitrosomonas europaea-like bacteria detected as the dominant β-subclass Proteobacteria ammonia oxidisers in reference and limed acid forest soils
-
Carnol, M., Kowalchuk, G.A. De Boer, W. (2002) Nitrosomonas europaea-like bacteria detected as the dominant β-subclass Proteobacteria ammonia oxidisers in reference and limed acid forest soils. Soil Biol Biochem 34 : 1047 1050.
-
(2002)
Soil Biol Biochem
, vol.34
, pp. 1047-1050
-
-
Carnol, M.1
Kowalchuk, G.A.2
De Boer, W.3
-
17
-
-
24044433279
-
ACT: The Artemis comparison tool
-
Carver, T.J., Rutherford, K.M., Berriman, M., Rajandream, M.-A., Barrell, B.G. Parkhill, J. (2005) ACT: the Artemis comparison tool. Bioinformatics 21 : 3422 3423.
-
(2005)
Bioinformatics
, vol.21
, pp. 3422-3423
-
-
Carver, T.J.1
Rutherford, K.M.2
Berriman, M.3
Rajandream, M.-A.4
Barrell, B.G.5
Parkhill, J.6
-
18
-
-
0027180593
-
Copper hypersensitivity and uptake in Pseudomonas syringae containing cloned components of the copper resistance operon
-
Cha, J.-S. Cooksey, D.A. (1993) Copper hypersensitivity and uptake in Pseudomonas syringae containing cloned components of the copper resistance operon. Appl Environ Microbiol 59 : 1671 1674.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 1671-1674
-
-
Cha, J.-S.1
Cooksey, D.A.2
-
19
-
-
0037408431
-
Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea
-
Chain, P., Lamerdin, J., Larimer, F., Regala, W., Lao, V., Land, M., et al. (2003) Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea. J Bacteriol 185 : 2759 2773.
-
(2003)
J Bacteriol
, vol.185
, pp. 2759-2773
-
-
Chain, P.1
Lamerdin, J.2
Larimer, F.3
Regala, W.4
Lao, V.5
Land, M.6
-
20
-
-
33750283857
-
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
-
Chain, P.S.G., Denef, V.J., Konstantinidis, K.T., Vergez, L.M., Agullo, L., Reyes, V.L., et al. (2006) Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc Natl Acad Sci USA 103 : 15280 15287.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 15280-15287
-
-
Chain, P.S.G.1
Denef, V.J.2
Konstantinidis, K.T.3
Vergez, L.M.4
Agullo, L.5
Reyes, V.L.6
-
21
-
-
33745172807
-
Transcriptome of Nitrosomonas europaea with a disrupted nitrite reductase (nirK) gene Appl
-
Cho, C.M.-H., Yan, T., Liu, X., Wu, L., Zhou, J. Stein, L.Y. (2006) Transcriptome of Nitrosomonas europaea with a disrupted nitrite reductase (nirK) gene Appl. Environ Microbiol 72 : 4450 4454.
-
(2006)
Environ Microbiol
, vol.72
, pp. 4450-4454
-
-
Cho, C.M.-H.1
Yan, T.2
Liu, X.3
Wu, L.4
Zhou, J.5
Stein, L.Y.6
-
22
-
-
18144382963
-
Anaerobic ammonium oxidation (anammox) in the marine environment
-
Dalsgaard, T., Thamdrup, B. Canfield, D.E. (2005) Anaerobic ammonium oxidation (anammox) in the marine environment. Res Microbiol 156 : 457 464.
-
(2005)
Res Microbiol
, vol.156
, pp. 457-464
-
-
Dalsgaard, T.1
Thamdrup, B.2
Canfield, D.E.3
-
23
-
-
2442449227
-
Genomic islands in pathogenic and environmental microorganisms
-
Dobrindt, U., Hochhut, B., Hentschel, U. Hacker, J. (2004) Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol 2 : 414 424.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 414-424
-
-
Dobrindt, U.1
Hochhut, B.2
Hentschel, U.3
Hacker, J.4
-
24
-
-
33847129611
-
Cytochromes P460 and c′-beta; A new family of high-spin cytochromes c
-
Elmore, B.O., Bergmann, D.J., Klotz, M.G. Hooper, A.B. (2007) Cytochromes P460 and c′-beta; A new family of high-spin cytochromes c. FEBS Lett 581 : 911 916.
-
(2007)
FEBS Lett
, vol.581
, pp. 911-916
-
-
Elmore, B.O.1
Bergmann, D.J.2
Klotz, M.G.3
Hooper, A.B.4
-
25
-
-
0031978181
-
Base-calling of automated sequencer traces using Phred. II. Error probabilities
-
Ewing, B. Green, P. (1998) Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res 8 : 186 194.
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
26
-
-
0031955518
-
Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
-
Ewing, B., Hillier, L., Wendl, M.C. Green, P. (1998) Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res 8 : 175 185.
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
27
-
-
12344310625
-
Erwinia chrysanthemi requires a second iron transport route dependent of the siderophore achromobactin for extracellular growth and plant infection
-
Franza, T., Mahé, B. Expert, D. (2005) Erwinia chrysanthemi requires a second iron transport route dependent of the siderophore achromobactin for extracellular growth and plant infection. Mol Microbiol 55 : 261 275.
-
(2005)
Mol Microbiol
, vol.55
, pp. 261-275
-
-
Franza, T.1
Mahé, B.2
Expert, D.3
-
28
-
-
0028061194
-
The superfamily of heme-copper respiratory oxidases
-
Garcia-Horsman, J.A., Barquera, B., Rumbley, J., Ma, J. Gennis, R.B. (1994) The superfamily of heme-copper respiratory oxidases. J Bacteriol 176 : 5587 5600.
-
(1994)
J Bacteriol
, vol.176
, pp. 5587-5600
-
-
Garcia-Horsman, J.A.1
Barquera, B.2
Rumbley, J.3
Ma, J.4
Gennis, R.B.5
-
29
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon, D., Abajian, C. Green, P. (1998) Consed: a graphical tool for sequence finishing. Genome Res 8 : 195 202.
-
(1998)
Genome Res
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
30
-
-
0344393479
-
Chemolithoorganotrophic growth of Nitrosomonas europaea on fructose
-
Hommes, N.G., Sayavedra-Soto, L.A. Arp, D.J. (2003) Chemolithoorganotrophic growth of Nitrosomonas europaea on fructose. J Bacteriol 185 : 6809 6814.
-
(2003)
J Bacteriol
, vol.185
, pp. 6809-6814
-
-
Hommes, N.G.1
Sayavedra-Soto, L.A.2
Arp, D.J.3
-
31
-
-
0026610274
-
2-labeling studies of the de novo synthesis of polypeptides by Nitrosomonas europaea during recovery from acetylene and light inactivation of ammonia monooxygenase
-
2-labeling studies of the de novo synthesis of polypeptides by Nitrosomonas europaea during recovery from acetylene and light inactivation of ammonia monooxygenase. J Biol Chem 267 : 1534 1545.
-
(1992)
J Biol Chem
, vol.267
, pp. 1534-1545
-
-
Hyman, M.R.1
Arp, D.J.2
-
32
-
-
1942476071
-
Enzymatic characterization of a prokaryotic urea carboxylase
-
Kanamori, T., Kanou, N., Atomi, H. Imanaka, T. (2004) Enzymatic characterization of a prokaryotic urea carboxylase. J Bacteriol 186 : 2532 2539.
-
(2004)
J Bacteriol
, vol.186
, pp. 2532-2539
-
-
Kanamori, T.1
Kanou, N.2
Atomi, H.3
Imanaka, T.4
-
33
-
-
15744397833
-
Allophanate hydrolase of Oleomonas sagaranensis involved in an ATP-dependent degradation pathway specific to urea
-
Kanamori, T., Kanou, N., Kusakabe, H.A. Imanaka, T. (2005) Allophanate hydrolase of Oleomonas sagaranensis involved in an ATP-dependent degradation pathway specific to urea. FEMS Microbiol Lett 245 : 61 65.
-
(2005)
FEMS Microbiol Lett
, vol.245
, pp. 61-65
-
-
Kanamori, T.1
Kanou, N.2
Kusakabe, H.A.3
Imanaka, T.4
-
34
-
-
33846976146
-
Anammox bacteria disguised as denitrifiers: Nitrate reduction to dinitrogen gas via nitrite and ammonium
-
Kartal, B., Kuypers, M.M., Lavik, G., Schalk, J., Op den Camp, H.J.M., Jetten, M.S.M. Strous, M. (2007) Anammox bacteria disguised as denitrifiers: nitrate reduction to dinitrogen gas via nitrite and ammonium. Environ Microbiol 9 : 635 642.
-
(2007)
Environ Microbiol
, vol.9
, pp. 635-642
-
-
Kartal, B.1
Kuypers, M.M.2
Lavik, G.3
Schalk, J.4
Op Den Camp, H.J.M.5
Jetten, M.S.M.6
Strous, M.7
-
35
-
-
0031732063
-
Multiple copies of ammonia monooxygenase (amo) operons have evolved under biased AT/GC mutational pressure in ammonia-oxidizing autotrophic bacteria
-
Klotz, M.G. Norton, J.M. (1998) Multiple copies of ammonia monooxygenase (amo) operons have evolved under biased AT/GC mutational pressure in ammonia-oxidizing autotrophic bacteria. FEMS Microbiol Lett 168 : 303 311.
-
(1998)
FEMS Microbiol Lett
, vol.168
, pp. 303-311
-
-
Klotz, M.G.1
Norton, J.M.2
-
36
-
-
33748762204
-
The complete genome sequence of the marine, nitrifying purple sulfur bacterium, Nitrosococcus oceani ATCC 19707
-
Klotz, M.G., Arp, D.J., Chain, P.S.G., El-Sheikh, A.F., Hauser, L., Hommes, N.G., et al. (2006) The complete genome sequence of the marine, nitrifying purple sulfur bacterium, Nitrosococcus oceani ATCC 19707. Appl Environ Microbiol 72 : 6299 6315.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 6299-6315
-
-
Klotz, M.G.1
Arp, D.J.2
Chain, P.S.G.3
El-Sheikh, A.F.4
Hauser, L.5
Hommes, N.G.6
-
37
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Könneke, M., Bernhard, A.E., de la Torre, J.R., Walker, C.B., Waterbury, J.B. Stahl, D.A. (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437 : 543 546.
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Könneke, M.1
Bernhard, A.E.2
De La Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
38
-
-
0025768249
-
Classification of eight new species of ammonia-oxidizing bacteria: Nitrosomonas communis sp. nov., Nitrosomonas ureae sp. nov., Nitrosomonas aestuarii sp. nov., Nitrosomonas marina sp. nov., Nitrosomonas nitrosa sp. nov., Nitrosomonas eutropha sp. nov., Nitrosomonas oligotropha sp. nov. & Nitrosomonas halophila sp. nov
-
Koops, H.P., Bottcher, B., Moller, U.C., Pommerening-Röser, A. Stehr, G. (1991) Classification of eight new species of ammonia-oxidizing bacteria: Nitrosomonas communis sp. nov., Nitrosomonas ureae sp. nov., Nitrosomonas aestuarii sp. nov., Nitrosomonas marina sp. nov., Nitrosomonas nitrosa sp. nov., Nitrosomonas eutropha sp. nov., Nitrosomonas oligotropha sp. nov. & Nitrosomonas halophila sp. nov. J Gen Microbiol 137 : 1689 1699.
-
(1991)
J Gen Microbiol
, vol.137
, pp. 1689-1699
-
-
Koops, H.P.1
Bottcher, B.2
Moller, U.C.3
Pommerening-Röser, A.4
Stehr, G.5
-
39
-
-
8744287762
-
The lithotrophic ammonia-oxidizing bacteria
-
In. Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.-H. Stackebrandt, E. (eds. New York, USA: Springer-Verlag, pp.
-
Koops, H.-P., Purkhold, U., Pommerening-Röser, A., Timmermann, G. Wagner, M. (2007) The lithotrophic ammonia-oxidizing bacteria. In The Prokaryotes: A Handbook on the Biology of Bacteria. Vol. 5: Proteobacteria: Alpha and Beta Subclass. Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.-H. Stackebrandt, E. (eds New York, USA : Springer-Verlag, pp. 778 811.
-
(2007)
The Prokaryotes: A Handbook on the Biology of Bacteria. Vol. 5: Proteobacteria: Alpha and Beta Subclass.
, pp. 778-811
-
-
Koops, H.-P.1
Purkhold, U.2
Pommerening-Röser, A.3
Timmermann, G.4
Wagner, M.5
-
40
-
-
16544387359
-
Urease-encoding genes in ammonia-oxidizing bacteria
-
Koper, T.E., El-Sheikh, A.F., Norton, J.M. Klotz, M.G. (2004) Urease-encoding genes in ammonia-oxidizing bacteria. Appl Environ Microbiol 70 : 2342 2348.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2342-2348
-
-
Koper, T.E.1
El-Sheikh, A.F.2
Norton, J.M.3
Klotz, M.G.4
-
41
-
-
0034009793
-
Molecular analysis of ammonia-oxidising bacteria in soil of successional grasslands of the Drentsche a (The Netherlands)
-
Kowalchuk, G.A., Stienstra, A.W., Heilig, G.H.J., Stephen, J.R. Woldendrop, J.W. (2000) Molecular analysis of ammonia-oxidising bacteria in soil of successional grasslands of the Drentsche A (The Netherlands). FEMS Microbiol Ecol 31 : 207 215.
-
(2000)
FEMS Microbiol Ecol
, vol.31
, pp. 207-215
-
-
Kowalchuk, G.A.1
Stienstra, A.W.2
Heilig, G.H.J.3
Stephen, J.R.4
Woldendrop, J.W.5
-
42
-
-
33747479446
-
Archaea predominate among ammonia-oxidizing prokayotes in soils
-
Leininger, S., Urich, T., Schloter, M., Schwark, L., Qi, L., Nicol, G.W., et al. (2006) Archaea predominate among ammonia-oxidizing prokayotes in soils. Nature 442 : 806 809.
-
(2006)
Nature
, vol.442
, pp. 806-809
-
-
Leininger, S.1
Urich, T.2
Schloter, M.3
Schwark, L.4
Qi, L.5
Nicol, G.W.6
-
43
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li, L., Stoeckert, C.J. Roos, D.S. (2006) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 13 : 2178 2189.
-
(2006)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
44
-
-
0030001221
-
Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria
-
Mobarry, B.K., Wagner, M., Urbain, V., Rittman, B.E. Stahl, D.A. (1996) Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Appl Environ Microbiol 62 : 2156 2162.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2156-2162
-
-
Mobarry, B.K.1
Wagner, M.2
Urbain, V.3
Rittman, B.E.4
Stahl, D.A.5
-
45
-
-
4444365983
-
Anoxic nitrification in marine sediments
-
Mortimer, R.J.G., Harris, S.J., Krom, M.D., Freitag, T.E., Prosser, J.I., Barnes, J., et al. (2004) Anoxic nitrification in marine sediments. Mar Ecol Prog Series 276 : 37 51.
-
(2004)
Mar Ecol Prog Series
, vol.276
, pp. 37-51
-
-
Mortimer, R.J.G.1
Harris, S.J.2
Krom, M.D.3
Freitag, T.E.4
Prosser, J.I.5
Barnes, J.6
-
46
-
-
0036167265
-
Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria
-
Norton, J.M., Alzerreca, J.J., Suwa, Y. Klotz, M.G. (2002) Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria. Arch Microbiol 177 : 139 149.
-
(2002)
Arch Microbiol
, vol.177
, pp. 139-149
-
-
Norton, J.M.1
Alzerreca, J.J.2
Suwa, Y.3
Klotz, M.G.4
-
47
-
-
0035432486
-
Influence of effluent irrigation on community composition and function of ammonia-oxidizing bacteria in soil
-
Oved, T., Shaviv, A., Goldrath, T., Mandelbaum, R.T. Minz, D. (2001) Influence of effluent irrigation on community composition and function of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 67 : 3426 3433.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 3426-3433
-
-
Oved, T.1
Shaviv, A.2
Goldrath, T.3
Mandelbaum, R.T.4
Minz, D.5
-
48
-
-
33750042897
-
Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments
-
Penton, C.R., Devol, A.H. Tiedje, J.M. (2006) Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments. Appl Environ Microbiol 72 : 6829 6832.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 6829-6832
-
-
Penton, C.R.1
Devol, A.H.2
Tiedje, J.M.3
-
49
-
-
0035371783
-
A novel scenario for the evolution of haem-copper oxygen reductases
-
Pereira, M.M., Santana, M. Teixeira, M. (2001) A novel scenario for the evolution of haem-copper oxygen reductases. Biochim Biophys Acta 1505 : 185 208.
-
(2001)
Biochim Biophys Acta
, vol.1505
, pp. 185-208
-
-
Pereira, M.M.1
Santana, M.2
Teixeira, M.3
-
51
-
-
0022455018
-
Dinitrogen production from nitrite by a Nitrosomonas isolate
-
Poth, M. (1986) Dinitrogen production from nitrite by a Nitrosomonas isolate. Appl Environ Microbiol 52 : 957 959.
-
(1986)
Appl Environ Microbiol
, vol.52
, pp. 957-959
-
-
Poth, M.1
-
52
-
-
0034466757
-
Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys
-
Purkhold, U., Pommerening-Röser, A., Juretschko, S., Schmid, M.C., Koops, H.-P. Wagner, M. (2000) Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol 66 : 5368 5382.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5368-5382
-
-
Purkhold, U.1
Pommerening-Röser, A.2
Juretschko, S.3
Schmid, M.C.4
Koops, H.-P.5
Wagner, M.6
-
53
-
-
0028226882
-
Cytochrome oxidase evolved by tinkering with denitrification enzymes
-
Saraste, M. Castresana, J. (1994) Cytochrome oxidase evolved by tinkering with denitrification enzymes. FEBS Lett 341 : 1 4.
-
(1994)
FEBS Lett
, vol.341
, pp. 1-4
-
-
Saraste, M.1
Castresana, J.2
-
54
-
-
0030941542
-
Anaerobic ammonia oxidation with nitrogen dioxide by Nitrosomonas eutropha
-
Schmidt, I. Bock, E. (1997) Anaerobic ammonia oxidation with nitrogen dioxide by Nitrosomonas eutropha. Arch Microbiol 167 : 106 111.
-
(1997)
Arch Microbiol
, vol.167
, pp. 106-111
-
-
Schmidt, I.1
Bock, E.2
-
57
-
-
11044228870
-
Denitrification and ammonia oxidation by Nitrosomonas europaea wild-type, and NirK- and NorB-deficient mutants
-
Schmidt, I., van Spanning, R.J.M. Jetten, M.S.M. (2004) Denitrification and ammonia oxidation by Nitrosomonas europaea wild-type, and NirK- and NorB-deficient mutants. Microbiology 150 : 4107 4114.
-
(2004)
Microbiology
, vol.150
, pp. 4107-4114
-
-
Schmidt, I.1
Van Spanning, R.J.M.2
Jetten, M.S.M.3
-
58
-
-
0031752797
-
Something from almost nothing: Carbon dioxide fixation in chemoautotrophs
-
Shively, J.M., van Keulen, G. Meijer, W.G. (1998) Something from almost nothing: carbon dioxide fixation in chemoautotrophs. Annu Rev Microbiol 52 : 191 230.
-
(1998)
Annu Rev Microbiol
, vol.52
, pp. 191-230
-
-
Shively, J.M.1
Van Keulen, G.2
Meijer, W.G.3
-
59
-
-
0036836839
-
Dinitrogen production from ammonia by Nitrosomonas europaea
-
Shrestha, N.K., Hadano, S., Kamachi, T. Okura, I. (2002) Dinitrogen production from ammonia by Nitrosomonas europaea. Appl Catal 237 : 33 39.
-
(2002)
Appl Catal
, vol.237
, pp. 33-39
-
-
Shrestha, N.K.1
Hadano, S.2
Kamachi, T.3
Okura, I.4
-
60
-
-
33644932387
-
Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255
-
Starkenburg, S.R., Chain, P.S.G., Sayavedra-Soto, L.A., Hauser, L., Land, M.L., Larimer, F.W., et al. (2006) Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255. Appl Environ Microbiol 72 : 2050 2063.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 2050-2063
-
-
Starkenburg, S.R.1
Chain, P.S.G.2
Sayavedra-Soto, L.A.3
Hauser, L.4
Land, M.L.5
Larimer, F.W.6
-
61
-
-
0028991717
-
The ammonia-oxidizing nitrifying population of the river Elbe estuary
-
Stehr, G., Bottcher, B., Dittberner, P., Rath, G. Koops, H.P. (1995) The ammonia-oxidizing nitrifying population of the river Elbe estuary. FEMS Microbiol Ecol 17 : 177 186.
-
(1995)
FEMS Microbiol Ecol
, vol.17
, pp. 177-186
-
-
Stehr, G.1
Bottcher, B.2
Dittberner, P.3
Rath, G.4
Koops, H.P.5
-
62
-
-
0029805297
-
Molecular diversity of soil and marine 16S rRNA gene sequences related to the β-subgroup ammonia-oxidizing bacteria
-
Stephen, J.R., McCaig, A.E., Smith, Z., Prosser, J.I. Embley, T.M. (1996) Molecular diversity of soil and marine 16S rRNA gene sequences related to the β-subgroup ammonia-oxidizing bacteria. Appl Environ Microbiol 62 : 4147 4154.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 4147-4154
-
-
Stephen, J.R.1
McCaig, A.E.2
Smith, Z.3
Prosser, J.I.4
Embley, T.M.5
-
63
-
-
9244252034
-
Anaerobic oxidation of methane and ammonium
-
Strous, M. Jetten, M.S.M. (2004) Anaerobic oxidation of methane and ammonium. Annu Rev Microbiol 58 : 99 117.
-
(2004)
Annu Rev Microbiol
, vol.58
, pp. 99-117
-
-
Strous, M.1
Jetten, M.S.M.2
-
64
-
-
33645741019
-
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
-
Strous, M., Pelletier, E., Mangenot, S., Rattei, T., Lehner, A., Taylor, M.W., et al. (2006) Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 440 : 790 794.
-
(2006)
Nature
, vol.440
, pp. 790-794
-
-
Strous, M.1
Pelletier, E.2
Mangenot, S.3
Rattei, T.4
Lehner, A.5
Taylor, M.W.6
-
65
-
-
28044464463
-
Involvement of SenC in assembly of cytochrome c oxidase in Rhodobacter capsulatus
-
Swem, D.L., Swem, L.R., Setterdahl, A. Bauer, C.E. (2005) Involvement of SenC in assembly of cytochrome c oxidase in Rhodobacter capsulatus. J Bacteriol 187 : 8081 8087.
-
(2005)
J Bacteriol
, vol.187
, pp. 8081-8087
-
-
Swem, D.L.1
Swem, L.R.2
Setterdahl, A.3
Bauer, C.E.4
-
66
-
-
28644435323
-
Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
-
Treusch, A.H., Leininger, S., Kletzin, A., Schuster, S.C., Klenk, H.P. Schleper, C. (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7 : 1985 1995.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1985-1995
-
-
Treusch, A.H.1
Leininger, S.2
Kletzin, A.3
Schuster, S.C.4
Klenk, H.P.5
Schleper, C.6
-
68
-
-
0036135688
-
Phylogeny and functional expression of ribulose 1,5-bisphosphate carboxylase/oxygenase from the autotrophic ammonia-oxidizing bacterium Nitrosospira sp. isolate 40KI
-
Utåker, J.B., Andersen, K., Aakra, Å., Moen, B. Nes, I.F. (2002) Phylogeny and functional expression of ribulose 1,5-bisphosphate carboxylase/oxygenase from the autotrophic ammonia-oxidizing bacterium Nitrosospira sp. isolate 40KI. J Bacteriol 184 : 468 478.
-
(2002)
J Bacteriol
, vol.184
, pp. 468-478
-
-
Utåker, J.B.1
Andersen, K.2
Aakra, Å.3
Moen, B.4
Nes, I.F.5
-
69
-
-
0033916918
-
Analysis of ammonia-oxidizing bacteria from hypersaline Mono Lake, California, on the basis of 16S rRNA sequences
-
Ward, B.B., Martino, D.P., Diaz, M.C. Joye, S.B. (2000) Analysis of ammonia-oxidizing bacteria from hypersaline Mono Lake, California, on the basis of 16S rRNA sequences. Appl Environ Microbiol 66 : 2873 2881.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2873-2881
-
-
Ward, B.B.1
Martino, D.P.2
Diaz, M.C.3
Joye, S.B.4
-
70
-
-
8844264574
-
Genomic insights into methanotrophy: The complete genome sequence of Methylococcus capsulatus (Bath)
-
Ward, N., Larsen, O., Sakwa, J., Bruseth, L., Khouri, H., Durkin, A.S., et al. (2004) Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). PloS Biol 2 : 1616 1628.
-
(2004)
PloS Biol
, vol.2
, pp. 1616-1628
-
-
Ward, N.1
Larsen, O.2
Sakwa, J.3
Bruseth, L.4
Khouri, H.5
Durkin, A.S.6
-
71
-
-
0015102599
-
Comparison of the morphology and deoxyribonucleic acid composition of 27 strains of nitrifying bacteria
-
Watson, S.W. Mandel, M. (1971) Comparison of the morphology and deoxyribonucleic acid composition of 27 strains of nitrifying bacteria. J Bacteriol 107 : 563 569.
-
(1971)
J Bacteriol
, vol.107
, pp. 563-569
-
-
Watson, S.W.1
Mandel, M.2
-
72
-
-
0036135250
-
Grassland management regimens reduce small-scale heterogeneity and species diversity of β-Proteobacterial ammonia oxidizer populations
-
Webster, G., Embley, T.M. Prosser, J.I. (2002) Grassland management regimens reduce small-scale heterogeneity and species diversity of β-Proteobacterial ammonia oxidizer populations. Appl Environ Microbiol 68 : 20 30.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 20-30
-
-
Webster, G.1
Embley, T.M.2
Prosser, J.I.3
-
73
-
-
33645008161
-
Transcript profiles of Nitrosomonas europaea during growth and upon deprivation of ammonia and carbonate
-
Wei, X., Yan, T., Hommes, N.G., Liu, X., Wu, L., McAlvin, C., et al. (2006a) Transcript profiles of Nitrosomonas europaea during growth and upon deprivation of ammonia and carbonate. FEMS Microbiol Lett 257 : 76 83.
-
(2006)
FEMS Microbiol Lett
, vol.257
, pp. 76-83
-
-
Wei, X.1
Yan, T.2
Hommes, N.G.3
Liu, X.4
Wu, L.5
McAlvin, C.6
-
74
-
-
33746432968
-
Iron nutrition and physiological responses to iron stress in Nitrosomonas europaea
-
Wei, X.M., Vajrala, N., Hauser, L., Sayavedra-Soto, L.A. Arp, D.J. (2006b) Iron nutrition and physiological responses to iron stress in Nitrosomonas europaea. Arch Microbiol 186 : 107 118.
-
(2006)
Arch Microbiol
, vol.186
, pp. 107-118
-
-
Wei, X.M.1
Vajrala, N.2
Hauser, L.3
Sayavedra-Soto, L.A.4
Arp, D.J.5
-
75
-
-
0034663575
-
Electron transfer during the oxidation of ammonia by the chemolithotrophic bacterium Nitrosomonas europaea
-
Whittaker, M., Bergmann, D., Arciero, D. Hooper, A.B. (2000) Electron transfer during the oxidation of ammonia by the chemolithotrophic bacterium Nitrosomonas europaea. Biochim Biophys Acta 1459 : 346 355.
-
(2000)
Biochim Biophys Acta
, vol.1459
, pp. 346-355
-
-
Whittaker, M.1
Bergmann, D.2
Arciero, D.3
Hooper, A.B.4
-
76
-
-
0003140215
-
Nitrification as a bacterial energy source
-
In. Prosser, J.I. (ed.). Oxford, UK: Society for General Microbiology, IRL Press, pp.
-
Wood, P.M. (1986) Nitrification as a bacterial energy source. In Nitrification. Prosser, J.I. (ed.). Oxford, UK : Society for General Microbiology, IRL Press, pp. 39 62.
-
(1986)
Nitrification.
, pp. 39-62
-
-
Wood, P.M.1
-
77
-
-
0034792578
-
Role of nitrifier denitrification in the production of nitrous oxide
-
Wrage, N., Velthof, G.L., van Beusichem, M.L. Oenema, O. (2001) Role of nitrifier denitrification in the production of nitrous oxide. Soil Biol Biochem 33 : 1723 1732.
-
(2001)
Soil Biol Biochem
, vol.33
, pp. 1723-1732
-
-
Wrage, N.1
Velthof, G.L.2
Van Beusichem, M.L.3
Oenema, O.4
-
78
-
-
33747596691
-
Archaeal nitrification in the ocean
-
Wuchter, C., Abbas, B., Coolen, M.J.L., Herfort, L., van Bleijswijk, J., Timmers, P., et al. (2006) Archaeal nitrification in the ocean. Proc Natl Acad Sci USA 103 : 12317 12322.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12317-12322
-
-
Wuchter, C.1
Abbas, B.2
Coolen, M.J.L.3
Herfort, L.4
Van Bleijswijk, J.5
Timmers, P.6
-
79
-
-
4344718419
-
2-responsive expression and gene organization of three ribulose-1,5-bisphosphate carboxylase/oxygenase enzymes and carboxysomes in Hydrogenovibrio marinus strain MH-110
-
2-responsive expression and gene organization of three ribulose-1,5-bisphosphate carboxylase/oxygenase enzymes and carboxysomes in Hydrogenovibrio marinus strain MH-110. J Bacteriol 186 : 5685 5691.
-
(2004)
J Bacteriol
, vol.186
, pp. 5685-5691
-
-
Yoshizawa, Y.1
Toyoda, K.2
Arai, H.3
Ishii, M.4
Igarashi, Y.5
-
81
-
-
0031456471
-
Cell biology and molecular basis of denitrification
-
Zumft, W.G. (1997) Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61 : 533 616.
-
(1997)
Microbiol Mol Biol Rev
, vol.61
, pp. 533-616
-
-
Zumft, W.G.1
|