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Volumn 12, Issue 4, 2014, Pages

Machine Learning Helps Identify CHRONO as a Circadian Clock Component

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN BMAL1; TRANSCRIPTION FACTOR CLOCK; ARNTL PROTEIN, MOUSE; CELL RECEPTOR; CIRCADIAN RHYTHM SIGNALING PROTEIN; CRY1 PROTEIN, MOUSE; CRY2 PROTEIN, MOUSE; CRYPTOCHROME; GLUCOCORTICOID RECEPTOR; GM129 PROTEIN, MOUSE; HISTONE DEACETYLASE; NR1D1 PROTEIN, MOUSE; NR1D2 PROTEIN, MOUSE; NUCLEAR RECEPTOR NR1D1; REPRESSOR PROTEIN; TRANSCRIPTION FACTOR ARNTL;

EID: 84900400446     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.1001840     Document Type: Article
Times cited : (104)

References (88)
  • 1
    • 52149109334 scopus 로고    scopus 로고
    • The genetics of mammalian circadian order and disorder: implications for physiology and disease
    • Takahashi JS, Hong H-K, Ko CH, McDearmon EL, (2008) The genetics of mammalian circadian order and disorder: implications for physiology and disease. Nat Rev Genet 9: 764-775.
    • (2008) Nat Rev Genet , vol.9 , pp. 764-775
    • Takahashi, J.S.1    Hong, H.-K.2    Ko, C.H.3    McDearmon, E.L.4
  • 2
    • 84869036539 scopus 로고    scopus 로고
    • Circadian topology of metabolism
    • doi:10.1038/nature11704
    • Bass J, (2012) Circadian topology of metabolism. Nature 491: 348-356 doi:10.1038/nature11704.
    • (2012) Nature , vol.491 , pp. 348-356
    • Bass, J.1
  • 3
    • 0037118077 scopus 로고    scopus 로고
    • Circadian rhythms from flies to human
    • Panda S, Hogenesch JB, Kay SA, (2002) Circadian rhythms from flies to human. Nature 417: 329-335.
    • (2002) Nature , vol.417 , pp. 329-335
    • Panda, S.1    Hogenesch, J.B.2    Kay, S.A.3
  • 4
    • 0030800739 scopus 로고    scopus 로고
    • Circadian oscillation of a mammalian homologue of the Drosophila period gene
    • Tei H, Okamura H, Shigeyoshi Y, Fukuhara C, Ozawa R, et al. (1997) Circadian oscillation of a mammalian homologue of the Drosophila period gene. Nature 389: 512-516.
    • (1997) Nature , vol.389 , pp. 512-516
    • Tei, H.1    Okamura, H.2    Shigeyoshi, Y.3    Fukuhara, C.4    Ozawa, R.5
  • 5
    • 0033597904 scopus 로고    scopus 로고
    • mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop
    • Kume K, Zylka MJ, Sriram S, Shearman LP, Weaver DR, et al. (1999) mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop. Cell 98: 193-205.
    • (1999) Cell , vol.98 , pp. 193-205
    • Kume, K.1    Zylka, M.J.2    Sriram, S.3    Shearman, L.P.4    Weaver, D.R.5
  • 6
    • 0037178787 scopus 로고    scopus 로고
    • The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator
    • Preitner N, Damiola F, Lopez-Molina L, Zakany J, Duboule D, et al. (2002) The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator. Cell 110: 251-260.
    • (2002) Cell , vol.110 , pp. 251-260
    • Preitner, N.1    Damiola, F.2    Lopez-Molina, L.3    Zakany, J.4    Duboule, D.5
  • 7
    • 4143142003 scopus 로고    scopus 로고
    • A functional genomics strategy reveals Rora as a component of the mammalian circadian clock
    • Sato TK, Panda S, Miraglia LJ, Reyes TM, Rudic RD, et al. (2004) A functional genomics strategy reveals Rora as a component of the mammalian circadian clock. Neuron 43: 527-537.
    • (2004) Neuron , vol.43 , pp. 527-537
    • Sato, T.K.1    Panda, S.2    Miraglia, L.J.3    Reyes, T.M.4    Rudic, R.D.5
  • 8
    • 0035136677 scopus 로고    scopus 로고
    • An hPer2 phosphorylation site mutation in familial advanced sleep phase syndrome
    • Toh KL, Jones CR, He Y, Eide EJ, Hinz WA, et al. (2001) An hPer2 phosphorylation site mutation in familial advanced sleep phase syndrome. Science 291: 1040-1043.
    • (2001) Science , vol.291 , pp. 1040-1043
    • Toh, K.L.1    Jones, C.R.2    He, Y.3    Eide, E.J.4    Hinz, W.A.5
  • 9
    • 34248566788 scopus 로고    scopus 로고
    • SCFFbxl3 controls the oscillation of the circadian clock by directing the degradation of cryptochrome proteins
    • Busino L, Bassermann F, Maiolica A, Lee C, Nolan PM, et al. (2007) SCFFbxl3 controls the oscillation of the circadian clock by directing the degradation of cryptochrome proteins. Science 316: 900-904.
    • (2007) Science , vol.316 , pp. 900-904
    • Busino, L.1    Bassermann, F.2    Maiolica, A.3    Lee, C.4    Nolan, P.M.5
  • 10
    • 55849113304 scopus 로고    scopus 로고
    • Implication of the F-Box protein FBXL21 in circadian pacemaker function in mammals
    • doi:10.1371/journal.pone.0003530
    • Dardente H, Mendoza J, Fustin J-M, Challet E, Hazlerigg DG, (2008) Implication of the F-Box protein FBXL21 in circadian pacemaker function in mammals. PLoS One 3: e3530 doi:10.1371/journal.pone.0003530.
    • (2008) PLoS One , vol.3
    • Dardente, H.1    Mendoza, J.2    Fustin, J.-M.3    Challet, E.4    Hazlerigg, D.G.5
  • 11
    • 0032872087 scopus 로고    scopus 로고
    • Familial advanced sleep-phase syndrome: a short-period circadian rhythm variant in humans
    • doi:10.1038/12502
    • Jones CR, Campbell SS, Zone SE, Cooper F, DeSano A, et al. (1999) Familial advanced sleep-phase syndrome: a short-period circadian rhythm variant in humans. Nat Med 5: 1062-1065 doi:10.1038/12502.
    • (1999) Nat Med , vol.5 , pp. 1062-1065
    • Jones, C.R.1    Campbell, S.S.2    Zone, S.E.3    Cooper, F.4    DeSano, A.5
  • 12
    • 68949200379 scopus 로고    scopus 로고
    • The transcriptional repressor DEC2 regulates sleep length in mammals
    • He Y, Jones CR, Fujiki N, Xu Y, Guo B, et al. (2009) The transcriptional repressor DEC2 regulates sleep length in mammals. Science 325: 866-870.
    • (2009) Science , vol.325 , pp. 866-870
    • He, Y.1    Jones, C.R.2    Fujiki, N.3    Xu, Y.4    Guo, B.5
  • 13
    • 84857499458 scopus 로고    scopus 로고
    • A survey of genomic studies supports association of circadian clock genes with bipolar disorder spectrum illnesses and lithium response
    • McCarthy MJ, Nievergelt CM, Kelsoe JR, Welsh DK, (2012) A survey of genomic studies supports association of circadian clock genes with bipolar disorder spectrum illnesses and lithium response. PLoS One 7: e32091.
    • (2012) PLoS One , vol.7
    • McCarthy, M.J.1    Nievergelt, C.M.2    Kelsoe, J.R.3    Welsh, D.K.4
  • 14
    • 70450239457 scopus 로고    scopus 로고
    • Metabolism and cancer: the circadian clock connection
    • Sahar S, Sassone-Corsi P, (2009) Metabolism and cancer: the circadian clock connection. Nat Rev Cancer 9: 886-896.
    • (2009) Nat Rev Cancer , vol.9 , pp. 886-896
    • Sahar, S.1    Sassone-Corsi, P.2
  • 15
    • 17944372944 scopus 로고    scopus 로고
    • Genome-wide epistatic interaction analysis reveals complex genetic determinants of circadian behavior in mice
    • doi:10.1101/gr.171601
    • Shimomura K, Low-Zeddies SS, King DP, Steeves TD, Whiteley A, et al. (2001) Genome-wide epistatic interaction analysis reveals complex genetic determinants of circadian behavior in mice. Genome Res 11: 959-980 doi:10.1101/gr.171601.
    • (2001) Genome Res , vol.11 , pp. 959-980
    • Shimomura, K.1    Low-Zeddies, S.S.2    King, D.P.3    Steeves, T.D.4    Whiteley, A.5
  • 16
    • 0015119210 scopus 로고
    • Clock mutants of Drosophila melanogaster
    • Konopka RJ, Benzer S, (1971) Clock mutants of Drosophila melanogaster. Proc Natl Acad Sci U S A 68: 2112-2116.
    • (1971) Proc Natl Acad Sci U S A , vol.68 , pp. 2112-2116
    • Konopka, R.J.1    Benzer, S.2
  • 17
    • 0032486330 scopus 로고    scopus 로고
    • Role of the CLOCK protein in the mammalian circadian mechanism
    • Gekakis N, (1998) Role of the CLOCK protein in the mammalian circadian mechanism. Science 280 (80) (): 1564-1569.
    • (1998) Science , vol.280 , Issue.80 , pp. 1564-1569
    • Gekakis, N.1
  • 18
    • 33847382431 scopus 로고    scopus 로고
    • CIPC is a mammalian circadian clock protein without invertebrate homologues
    • Zhao W-N, Malinin N, Yang F-C, Staknis D, Gekakis N, et al. (2007) CIPC is a mammalian circadian clock protein without invertebrate homologues. Nat Cell Biol 9: 268-275.
    • (2007) Nat Cell Biol , vol.9 , pp. 268-275
    • Zhao, W.-N.1    Malinin, N.2    Yang, F.-C.3    Staknis, D.4    Gekakis, N.5
  • 19
    • 75649127967 scopus 로고    scopus 로고
    • Identification of RACK1 and protein kinase Calpha as integral components of the mammalian circadian clock
    • Robles MS, Boyault C, Knutti D, Padmanabhan K, Weitz CJ, (2010) Identification of RACK1 and protein kinase Calpha as integral components of the mammalian circadian clock. Science 327: 463-466.
    • (2010) Science , vol.327 , pp. 463-466
    • Robles, M.S.1    Boyault, C.2    Knutti, D.3    Padmanabhan, K.4    Weitz, C.J.5
  • 20
    • 18244365850 scopus 로고    scopus 로고
    • PERIOD1-associated proteins modulate the negative limb of the mammalian circadian oscillator
    • doi:10.1126/science.1107373
    • Brown SA, Ripperger J, Kadener S, Fleury-Olela F, Vilbois F, et al. (2005) PERIOD1-associated proteins modulate the negative limb of the mammalian circadian oscillator. Science 308: 693-696 doi:10.1126/science.1107373.
    • (2005) Science , vol.308 , pp. 693-696
    • Brown, S.A.1    Ripperger, J.2    Kadener, S.3    Fleury-Olela, F.4    Vilbois, F.5
  • 21
    • 79959366611 scopus 로고    scopus 로고
    • A molecular mechanism for circadian clock negative feedback
    • doi:10.1126/science.1196766
    • Duong HA, Robles MS, Knutti D, Weitz CJ, (2011) A molecular mechanism for circadian clock negative feedback. Science 332: 1436-1439 doi:10.1126/science.1196766.
    • (2011) Science , vol.332 , pp. 1436-1439
    • Duong, H.A.1    Robles, M.S.2    Knutti, D.3    Weitz, C.J.4
  • 23
    • 0038492417 scopus 로고    scopus 로고
    • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae)
    • Troyanskaya OG, Dolinski K, Owen AB, Altman RB, Botstein D, (2003) A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae). Proc Natl Acad Sci U S A 100: 8348-8353.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 8348-8353
    • Troyanskaya, O.G.1    Dolinski, K.2    Owen, A.B.3    Altman, R.B.4    Botstein, D.5
  • 26
    • 18444414586 scopus 로고    scopus 로고
    • Coordinated transcription of key pathways in the mouse by the circadian clock
    • Panda S, Antoch MP, Miller BH, Su AI, Schook AB, et al. (2002) Coordinated transcription of key pathways in the mouse by the circadian clock. Cell 109: 307-320.
    • (2002) Cell , vol.109 , pp. 307-320
    • Panda, S.1    Antoch, M.P.2    Miller, B.H.3    Su, A.I.4    Schook, A.B.5
  • 27
    • 40149090376 scopus 로고    scopus 로고
    • Redundant function of REV-ERBalpha and beta and non-essential role for Bmal1 cycling in transcriptional regulation of intracellular circadian rhythms
    • Liu AC, Tran HG, Zhang EE, Priest AA, Welsh DK, et al. (2008) Redundant function of REV-ERBalpha and beta and non-essential role for Bmal1 cycling in transcriptional regulation of intracellular circadian rhythms. PLoS Genet 4: e1000023.
    • (2008) PLoS Genet , vol.4
    • Liu, A.C.1    Tran, H.G.2    Zhang, E.E.3    Priest, A.A.4    Welsh, D.K.5
  • 28
    • 70349184395 scopus 로고    scopus 로고
    • A genome-wide RNAi screen for modifiers of the circadian clock in human cells
    • Zhang EE, Liu AC, Hirota T, Miraglia LJ, Welch G, et al. (2009) A genome-wide RNAi screen for modifiers of the circadian clock in human cells. Cell 139: 199-210.
    • (2009) Cell , vol.139 , pp. 199-210
    • Zhang, E.E.1    Liu, A.C.2    Hirota, T.3    Miraglia, L.J.4    Welch, G.5
  • 29
    • 77954760827 scopus 로고    scopus 로고
    • A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes
    • Lin A, Wang RT, Ahn S, Park CC, Smith DJ, (2010) A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes. Genome Res 20: 1122-1132.
    • (2010) Genome Res , vol.20 , pp. 1122-1132
    • Lin, A.1    Wang, R.T.2    Ahn, S.3    Park, C.C.4    Smith, D.J.5
  • 30
    • 77949263046 scopus 로고    scopus 로고
    • TissueDistributionDBs: a repository of organism-specific tissue-distribution profiles
    • doi:10.1007/s00214-009-0670-5
    • Kogenaru S, Val C, Hotz-Wagenblatt A, Glatting K-H, (2009) TissueDistributionDBs: a repository of organism-specific tissue-distribution profiles. Theor Chem Acc 125: 651-658 doi:10.1007/s00214-009-0670-5.
    • (2009) Theor Chem Acc , vol.125 , pp. 651-658
    • Kogenaru, S.1    Val, C.2    Hotz-Wagenblatt, A.3    Glatting, K.-H.4
  • 33
    • 0030045791 scopus 로고    scopus 로고
    • The two PAR leucine zipper proteins, TEF and DBP, display similar circadian and tissue-specific expression, but have different target promoter preferences
    • Fonjallaz P, Ossipow V, Wanner G, Schibler U, (1996) The two PAR leucine zipper proteins, TEF and DBP, display similar circadian and tissue-specific expression, but have different target promoter preferences. EMBO J 15: 351-362.
    • (1996) EMBO J , vol.15 , pp. 351-362
    • Fonjallaz, P.1    Ossipow, V.2    Wanner, G.3    Schibler, U.4
  • 34
    • 0035871311 scopus 로고    scopus 로고
    • Antagonistic role of E4BP4 and PAR proteins in the circadian oscillatory mechanism
    • Mitsui S, Yamaguchi S, Matsuo T, Ishida Y, Okamura H, (2001) Antagonistic role of E4BP4 and PAR proteins in the circadian oscillatory mechanism. Genes Dev 15: 995-1006.
    • (2001) Genes Dev , vol.15 , pp. 995-1006
    • Mitsui, S.1    Yamaguchi, S.2    Matsuo, T.3    Ishida, Y.4    Okamura, H.5
  • 35
    • 0141889955 scopus 로고    scopus 로고
    • Control mechanism of the circadian clock for timing of cell division in vivo
    • Matsuo T, Yamaguchi S, Mitsui S, Emi A, Shimoda F, et al. (2003) Control mechanism of the circadian clock for timing of cell division in vivo. Science 302: 255-259.
    • (2003) Science , vol.302 , pp. 255-259
    • Matsuo, T.1    Yamaguchi, S.2    Mitsui, S.3    Emi, A.4    Shimoda, F.5
  • 36
    • 0030729774 scopus 로고    scopus 로고
    • The DBP gene is expressed according to a circadian rhythm in the suprachiasmatic nucleus and influences circadian behavior
    • Lopez-Molina L, Conquet F, Dubois-Dauphin M, Schibler U, (1997) The DBP gene is expressed according to a circadian rhythm in the suprachiasmatic nucleus and influences circadian behavior. EMBO J 16: 6762-6771.
    • (1997) EMBO J , vol.16 , pp. 6762-6771
    • Lopez-Molina, L.1    Conquet, F.2    Dubois-Dauphin, M.3    Schibler, U.4
  • 37
    • 70349764508 scopus 로고    scopus 로고
    • REV-ERBalpha participates in circadian SREBP signaling and bile acid homeostasis
    • Le Martelot G, Claudel T, Gatfield D, Schaad O, Kornmann B, et al. (2009) REV-ERBalpha participates in circadian SREBP signaling and bile acid homeostasis. PLoS Biol 7: e1000181.
    • (2009) PLoS Biol , vol.7
    • Le Martelot, G.1    Claudel, T.2    Gatfield, D.3    Schaad, O.4    Kornmann, B.5
  • 38
    • 65549103855 scopus 로고    scopus 로고
    • Circadian clock feedback cycle through NAMPT-mediated NAD+ biosynthesis
    • Ramsey KM, Yoshino J, Brace CS, Abrassart D, Kobayashi Y, et al. (2009) Circadian clock feedback cycle through NAMPT-mediated NAD+ biosynthesis. Science 324: 651-654.
    • (2009) Science , vol.324 , pp. 651-654
    • Ramsey, K.M.1    Yoshino, J.2    Brace, C.S.3    Abrassart, D.4    Kobayashi, Y.5
  • 41
    • 57349112866 scopus 로고    scopus 로고
    • Relationships between circadian rhythms and modulation of gene expression by glucocorticoids in skeletal muscle
    • Almon RR, Yang E, Lai W, Androulakis IP, Ghimbovschi S, et al. (2008) Relationships between circadian rhythms and modulation of gene expression by glucocorticoids in skeletal muscle. Am J Physiol Regul Integr Comp Physiol 295: R1031-R1047.
    • (2008) Am J Physiol Regul Integr Comp Physiol , vol.295
    • Almon, R.R.1    Yang, E.2    Lai, W.3    Androulakis, I.P.4    Ghimbovschi, S.5
  • 42
    • 79959351684 scopus 로고    scopus 로고
    • Light-dark oscillations in the lung transcriptome: implications for lung homeostasis, repair, metabolism, disease, and drug action
    • Sukumaran S, Jusko WJ, Dubois DC, Almon RR, (2011) Light-dark oscillations in the lung transcriptome: implications for lung homeostasis, repair, metabolism, disease, and drug action. J Appl Physiol 110: 1732-1747.
    • (2011) J Appl Physiol , vol.110 , pp. 1732-1747
    • Sukumaran, S.1    Jusko, W.J.2    Dubois, D.C.3    Almon, R.R.4
  • 43
    • 79952255290 scopus 로고    scopus 로고
    • Genome-wide profiling of the core clock protein BMAL1 targets reveals a strict relationship with metabolism
    • Hatanaka F, Matsubara C, Myung J, Yoritaka T, Kamimura N, et al. (2010) Genome-wide profiling of the core clock protein BMAL1 targets reveals a strict relationship with metabolism. Mol Cell Biol 30: 5636-5648.
    • (2010) Mol Cell Biol , vol.30 , pp. 5636-5648
    • Hatanaka, F.1    Matsubara, C.2    Myung, J.3    Yoritaka, T.4    Kamimura, N.5
  • 44
    • 79952261359 scopus 로고    scopus 로고
    • Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver
    • Rey G, Cesbron F, Rougemont J, Reinke H, Brunner M, et al. (2011) Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver. PLoS Biol 9: e1000595.
    • (2011) PLoS Biol , vol.9
    • Rey, G.1    Cesbron, F.2    Rougemont, J.3    Reinke, H.4    Brunner, M.5
  • 45
    • 84867667011 scopus 로고    scopus 로고
    • Transcriptional architecture and chromatin landscape of the core circadian clock in mammals
    • Koike N, Yoo S-H, Huang H-C, Kumar V, Lee C, et al. (2012) Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. Science 338: 349-354.
    • (2012) Science , vol.338 , pp. 349-354
    • Koike, N.1    Yoo, S.-H.2    Huang, H.-C.3    Kumar, V.4    Lee, C.5
  • 46
    • 33847632469 scopus 로고    scopus 로고
    • Circadian and CLOCK-controlled regulation of the mouse transcriptome and cell proliferation
    • Miller BH, McDearmon EL, Panda S, Hayes KR, Zhang J, et al. (2007) Circadian and CLOCK-controlled regulation of the mouse transcriptome and cell proliferation. Proc Natl Acad Sci U S A 104: 3342-3347.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 3342-3347
    • Miller, B.H.1    McDearmon, E.L.2    Panda, S.3    Hayes, K.R.4    Zhang, J.5
  • 47
  • 48
    • 75849136095 scopus 로고    scopus 로고
    • Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression
    • doi:10.1073/pnas.0909591106
    • Vollmers C, Gill S, DiTacchio L, Pulivarthy SR, Le HD, et al. (2009) Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression. Proc Natl Acad Sci U S A 106: 21453-21458 doi:10.1073/pnas.0909591106.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 21453-21458
    • Vollmers, C.1    Gill, S.2    DiTacchio, L.3    Pulivarthy, S.R.4    Le, H.D.5
  • 49
    • 33644625748 scopus 로고    scopus 로고
    • Feedback repression is required for mammalian circadian clock function
    • Sato TK, Yamada RG, Ukai H, Baggs JE, Miraglia LJ, et al. (2006) Feedback repression is required for mammalian circadian clock function. Nat Genet 38: 312-319.
    • (2006) Nat Genet , vol.38 , pp. 312-319
    • Sato, T.K.1    Yamada, R.G.2    Ukai, H.3    Baggs, J.E.4    Miraglia, L.J.5
  • 50
    • 79959210305 scopus 로고    scopus 로고
    • A conditional knockout resource for the genome-wide study of mouse gene function
    • Skarnes WC, Rosen B, West AP, Koutsourakis M, Bushell W, et al. (2011) A conditional knockout resource for the genome-wide study of mouse gene function. Nature 474: 337-342.
    • (2011) Nature , vol.474 , pp. 337-342
    • Skarnes, W.C.1    Rosen, B.2    West, A.P.3    Koutsourakis, M.4    Bushell, W.5
  • 51
    • 1942519367 scopus 로고    scopus 로고
    • A reliable lacZ expression reporter cassette for multipurpose, knockout-first alleles
    • Testa G, Schaft J, van der Hoeven F, Glaser S, Anastassiadis K, et al. (2004) A reliable lacZ expression reporter cassette for multipurpose, knockout-first alleles. Genesis 38: 151-158.
    • (2004) Genesis , vol.38 , pp. 151-158
    • Testa, G.1    Schaft, J.2    van der Hoeven, F.3    Glaser, S.4    Anastassiadis, K.5
  • 52
    • 33646130147 scopus 로고    scopus 로고
    • A clock shock: mouse CLOCK is not required for circadian oscillator function
    • Debruyne JP, Noton E, Lambert CM, Maywood ES, Weaver DR, et al. (2006) A clock shock: mouse CLOCK is not required for circadian oscillator function. Neuron 50: 465-477.
    • (2006) Neuron , vol.50 , pp. 465-477
    • Debruyne, J.P.1    Noton, E.2    Lambert, C.M.3    Maywood, E.S.4    Weaver, D.R.5
  • 53
    • 0035422392 scopus 로고    scopus 로고
    • Altered behavioral rhythms and clock gene expression in mice with a targeted mutation in the Period1 gene
    • Cermakian N, Monaco L, Pando MP, Dierich A, Sassone-Corsi P, (2001) Altered behavioral rhythms and clock gene expression in mice with a targeted mutation in the Period1 gene. EMBO J 20: 3967-3974.
    • (2001) EMBO J , vol.20 , pp. 3967-3974
    • Cermakian, N.1    Monaco, L.2    Pando, M.P.3    Dierich, A.4    Sassone-Corsi, P.5
  • 54
    • 0033847103 scopus 로고    scopus 로고
    • Targeted disruption of the mPer3 gene: subtle effects on circadian clock function
    • Shearman LP, Jin X, Lee C, Reppert SM, Weaver DR, (2000) Targeted disruption of the mPer3 gene: subtle effects on circadian clock function. Mol Cell Biol 20: 6269-6275.
    • (2000) Mol Cell Biol , vol.20 , pp. 6269-6275
    • Shearman, L.P.1    Jin, X.2    Lee, C.3    Reppert, S.M.4    Weaver, D.R.5
  • 55
    • 0032527749 scopus 로고    scopus 로고
    • Disruption of retinoid-related orphan receptor beta changes circadian behavior, causes retinal degeneration and leads to vacillans phenotype in mice
    • André E, Conquet F, Steinmayr M, Stratton SC, Porciatti V, et al. (1998) Disruption of retinoid-related orphan receptor beta changes circadian behavior, causes retinal degeneration and leads to vacillans phenotype in mice. EMBO J 17: 3867-3877.
    • (1998) EMBO J , vol.17 , pp. 3867-3877
    • André, E.1    Conquet, F.2    Steinmayr, M.3    Stratton, S.C.4    Porciatti, V.5
  • 56
    • 0038454431 scopus 로고    scopus 로고
    • Altered patterns of sleep and behavioral adaptability in NPAS2-deficient mice
    • Dudley CA, Erbel-Sieler C, Estill SJ, Reick M, Franken P, et al. (2003) Altered patterns of sleep and behavioral adaptability in NPAS2-deficient mice. Science 301: 379-383.
    • (2003) Science , vol.301 , pp. 379-383
    • Dudley, C.A.1    Erbel-Sieler, C.2    Estill, S.J.3    Reick, M.4    Franken, P.5
  • 57
    • 84883434066 scopus 로고    scopus 로고
    • The CRTC1-SIK1 pathway regulates entrainment of the circadian clock
    • Jagannath A, Butler R, Godinho SIH, Couch Y, Brown LA, et al. (2013) The CRTC1-SIK1 pathway regulates entrainment of the circadian clock. Cell 154: 1100-1111.
    • (2013) Cell , vol.154 , pp. 1100-1111
    • Jagannath, A.1    Butler, R.2    Godinho, S.I.H.3    Couch, Y.4    Brown, L.A.5
  • 58
    • 76749168029 scopus 로고    scopus 로고
    • Circadian clock gene Bmal1 is not essential; functional replacement with its paralog, Bmal2
    • Shi S, Hida A, McGuinness OP, Wasserman DH, Yamazaki S, et al. (2010) Circadian clock gene Bmal1 is not essential; functional replacement with its paralog, Bmal2. Curr Biol 20: 316-321.
    • (2010) Curr Biol , vol.20 , pp. 316-321
    • Shi, S.1    Hida, A.2    McGuinness, O.P.3    Wasserman, D.H.4    Yamazaki, S.5
  • 60
    • 0033825665 scopus 로고    scopus 로고
    • Transactivation mechanisms of mouse clock transcription factors, mClock and mArnt3
    • Takahata S, Ozaki T, Mimura J, Kikuchi Y, Sogawa K, et al. (2000) Transactivation mechanisms of mouse clock transcription factors, mClock and mArnt3. Genes Cells 5: 739-747.
    • (2000) Genes Cells , vol.5 , pp. 739-747
    • Takahata, S.1    Ozaki, T.2    Mimura, J.3    Kikuchi, Y.4    Sogawa, K.5
  • 61
    • 33644617485 scopus 로고    scopus 로고
    • Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions
    • Ripperger JA, Schibler U, (2006) Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions. Nat Genet 38: 369-374.
    • (2006) Nat Genet , vol.38 , pp. 369-374
    • Ripperger, J.A.1    Schibler, U.2
  • 62
    • 33646145721 scopus 로고    scopus 로고
    • Circadian regulator CLOCK is a histone acetyltransferase
    • Doi M, Hirayama J, Sassone-Corsi P, (2006) Circadian regulator CLOCK is a histone acetyltransferase. Cell 125: 497-508.
    • (2006) Cell , vol.125 , pp. 497-508
    • Doi, M.1    Hirayama, J.2    Sassone-Corsi, P.3
  • 63
    • 77957869145 scopus 로고    scopus 로고
    • Coactivation of the CLOCK-BMAL1 complex by CBP mediates resetting of the circadian clock
    • Lee Y, Lee J, Kwon I, Nakajima Y, Ohmiya Y, et al. (2010) Coactivation of the CLOCK-BMAL1 complex by CBP mediates resetting of the circadian clock. J Cell Sci 123: 3547-3557.
    • (2010) J Cell Sci , vol.123 , pp. 3547-3557
    • Lee, Y.1    Lee, J.2    Kwon, I.3    Nakajima, Y.4    Ohmiya, Y.5
  • 64
    • 84896736467 scopus 로고    scopus 로고
    • Gene Model 129 (Gm129) encodes a novel transcriptional repressor that modulates circadian gene expression
    • Annayev Y, Adar S, Chiou Y-Y, Lieb J, Sancar A, et al. (2014) Gene Model 129 (Gm129) encodes a novel transcriptional repressor that modulates circadian gene expression. J Biol Chem M113.534651.
    • (2014) J Biol Chem
    • Annayev, Y.1    Adar, S.2    Chiou, Y.-Y.3    Lieb, J.4    Sancar, A.5
  • 65
    • 84862822068 scopus 로고    scopus 로고
    • PML regulates PER2 nuclear localization and circadian function
    • Miki T, Xu Z, Chen-Goodspeed M, Liu M, Van Oort-Jansen A, et al. (2012) PML regulates PER2 nuclear localization and circadian function. EMBO J 31: 1427-1439.
    • (2012) EMBO J , vol.31 , pp. 1427-1439
    • Miki, T.1    Xu, Z.2    Chen-Goodspeed, M.3    Liu, M.4    Van Oort-Jansen, A.5
  • 66
    • 76749139528 scopus 로고    scopus 로고
    • The mammalian clock component PERIOD2 coordinates circadian output by interaction with nuclear receptors
    • Schmutz I, Ripperger JA, Baeriswyl-Aebischer S, Albrecht U, (2010) The mammalian clock component PERIOD2 coordinates circadian output by interaction with nuclear receptors. Genes Dev 24: 345-357.
    • (2010) Genes Dev , vol.24 , pp. 345-357
    • Schmutz, I.1    Ripperger, J.A.2    Baeriswyl-Aebischer, S.3    Albrecht, U.4
  • 67
    • 0037426839 scopus 로고    scopus 로고
    • Rhythmic histone acetylation underlies transcription in the mammalian circadian clock
    • Etchegaray J-P, Lee C, Wade PA, Reppert SM, (2003) Rhythmic histone acetylation underlies transcription in the mammalian circadian clock. Nature 421: 177-182.
    • (2003) Nature , vol.421 , pp. 177-182
    • Etchegaray, J.-P.1    Lee, C.2    Wade, P.A.3    Reppert, S.M.4
  • 69
    • 20844461135 scopus 로고    scopus 로고
    • Obesity and metabolic syndrome in circadian Clock mutant mice
    • Turek FW, Joshu C, Kohsaka A, Lin E, Ivanova G, et al. (2005) Obesity and metabolic syndrome in circadian Clock mutant mice. Science 308: 1043-1045.
    • (2005) Science , vol.308 , pp. 1043-1045
    • Turek, F.W.1    Joshu, C.2    Kohsaka, A.3    Lin, E.4    Ivanova, G.5
  • 70
    • 16844370426 scopus 로고    scopus 로고
    • Deletion of the mammalian circadian clock gene BMAL1/Mop3 alters baseline sleep architecture and the response to sleep deprivation
    • Laposky A, Easton A, Dugovic C, Walisser J, Bradfield C, et al. (2005) Deletion of the mammalian circadian clock gene BMAL1/Mop3 alters baseline sleep architecture and the response to sleep deprivation. Sleep 28: 395-409.
    • (2005) Sleep , vol.28 , pp. 395-409
    • Laposky, A.1    Easton, A.2    Dugovic, C.3    Walisser, J.4    Bradfield, C.5
  • 72
  • 73
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia NT, Lareau LF, Weissman JS, (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147: 789-802.
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 74
    • 79959687662 scopus 로고    scopus 로고
    • An integrated approach to characterize genetic interaction networks in yeast metabolism
    • Szappanos B, Kovács K, Szamecz B, Honti F, Costanzo M, et al. (2011) An integrated approach to characterize genetic interaction networks in yeast metabolism. Nat Genet 43: 656-662.
    • (2011) Nat Genet , vol.43 , pp. 656-662
    • Szappanos, B.1    Kovács, K.2    Szamecz, B.3    Honti, F.4    Costanzo, M.5
  • 75
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team, Vienna, Austria: R Foundation for Statistical Computing
    • R Development Core Team (2011) R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
    • (2011) R: A language and environment for statistical computing
  • 77
    • 77957266573 scopus 로고    scopus 로고
    • JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets
    • Hughes ME, Hogenesch JB, Kornacker K, (2010) JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets. J Biol Rhythms 25: 372-380.
    • (2010) J Biol Rhythms , vol.25 , pp. 372-380
    • Hughes, M.E.1    Hogenesch, J.B.2    Kornacker, K.3
  • 78
    • 16244366026 scopus 로고
    • Index for rating diagnostic tests
    • Youden WJ, (1950) Index for rating diagnostic tests. Cancer 3: 32-35.
    • (1950) Cancer , vol.3 , pp. 32-35
    • Youden, W.J.1
  • 82
    • 0025326334 scopus 로고
    • Gene splicing by overlap extension: tailor-made genes using the polymerase chain reaction
    • Horton RM, Cai ZL, Ho SN, Pease LR, (1990) Gene splicing by overlap extension: tailor-made genes using the polymerase chain reaction. Biotechniques 8: 528-535.
    • (1990) Biotechniques , vol.8 , pp. 528-535
    • Horton, R.M.1    Cai, Z.L.2    Ho, S.N.3    Pease, L.R.4
  • 83
    • 67649834440 scopus 로고    scopus 로고
    • ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions
    • Schmidt D, Wilson MD, Spyrou C, Brown GD, Hadfield J, et al. (2009) ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. Methods 48 (3) (): 240-248.
    • (2009) Methods , vol.48 , Issue.3 , pp. 240-248
    • Schmidt, D.1    Wilson, M.D.2    Spyrou, C.3    Brown, G.D.4    Hadfield, J.5
  • 84
    • 0030470434 scopus 로고    scopus 로고
    • Methods of measuring phase shifts: why I continue to use an Aschoff type II procedure despite the skepticism of referees
    • Mrosovsky N, (1996) Methods of measuring phase shifts: why I continue to use an Aschoff type II procedure despite the skepticism of referees. Chronobiol Int 13: 387-392.
    • (1996) Chronobiol Int , vol.13 , pp. 387-392
    • Mrosovsky, N.1
  • 85
    • 84881443700 scopus 로고    scopus 로고
    • Photic phase-response curve in 2 strains of mice with impaired responsiveness to estrogens
    • Blattner MS, Mahoney MM, (2013) Photic phase-response curve in 2 strains of mice with impaired responsiveness to estrogens. J Biol Rhythms 28: 291-300.
    • (2013) J Biol Rhythms , vol.28 , pp. 291-300
    • Blattner, M.S.1    Mahoney, M.M.2
  • 86
    • 34250666701 scopus 로고    scopus 로고
    • Production and purification of lentiviral vectors
    • Tiscornia G, Singer O, Verma IM, (2006) Production and purification of lentiviral vectors. Nat Protoc 1: 241-245.
    • (2006) Nat Protoc , vol.1 , pp. 241-245
    • Tiscornia, G.1    Singer, O.2    Verma, I.M.3


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