-
1
-
-
27144544622
-
Assembly of variant histones into chromatin
-
Henikoff S, Ahmad K. 2005. Assembly of variant histones into chromatin. Annu Rev Cell Dev Biol 21: 133-53.
-
(2005)
Annu Rev Cell Dev Biol
, vol.21
, pp. 133-153
-
-
Henikoff, S.1
Ahmad, K.2
-
2
-
-
84857108841
-
Histone variants and epigenetic inheritance
-
Yuan G, Zhu B. 2012. Histone variants and epigenetic inheritance. Biochim Biophys Acta 1819: 222-9.
-
(2012)
Biochim Biophys Acta
, vol.1819
, pp. 222-229
-
-
Yuan, G.1
Zhu, B.2
-
3
-
-
0036307707
-
Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution
-
Davey CA, Sargent DF, Luger K, Maeder AW, et al. 2002. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution. J Mol Biol 319: 1097-113.
-
(2002)
J Mol Biol
, vol.319
, pp. 1097-1113
-
-
Davey, C.A.1
Sargent, D.F.2
Luger, K.3
Maeder, A.W.4
-
4
-
-
79952536146
-
The double face of the histone variant H3.3
-
Szenker E, Ray-Gallet D, Almouzni G. 2011. The double face of the histone variant H3.3. Cell Res 21: 421-34.
-
(2011)
Cell Res
, vol.21
, pp. 421-434
-
-
Szenker, E.1
Ray-Gallet, D.2
Almouzni, G.3
-
5
-
-
84870807717
-
Structure of the variant histone H3.3-H4 heterodimer in complex with its chaperone DAXX
-
Liu CP, Xiong C, Wang M, Yu Z, et al. 2012. Structure of the variant histone H3.3-H4 heterodimer in complex with its chaperone DAXX. Nat Struct Mol Biol 19: 1287-92.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 1287-1292
-
-
Liu, C.P.1
Xiong, C.2
Wang, M.3
Yu, Z.4
-
6
-
-
84869886446
-
DAXX envelops a histone H3.3-H4 dimer for H3.3-specific recognition
-
Elsasser SJ, Huang H, Lewis PW, Chin JW, et al. 2012. DAXX envelops a histone H3.3-H4 dimer for H3.3-specific recognition. Nature 491: 560-5.
-
(2012)
Nature
, vol.491
, pp. 560-565
-
-
Elsasser, S.J.1
Huang, H.2
Lewis, P.W.3
Chin, J.W.4
-
7
-
-
0036299092
-
The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly
-
Ahmad K, Henikoff S. 2002. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol Cell 9: 1191-200.
-
(2002)
Mol Cell
, vol.9
, pp. 1191-1200
-
-
Ahmad, K.1
Henikoff, S.2
-
8
-
-
0742304304
-
Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis
-
Tagami H, Ray-Gallet D, Almouzni G, Nakatani Y. 2004. Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis. Cell 116: 51-61.
-
(2004)
Cell
, vol.116
, pp. 51-61
-
-
Tagami, H.1
Ray-Gallet, D.2
Almouzni, G.3
Nakatani, Y.4
-
9
-
-
77649099092
-
Distinct factors control histone variant H3.3 localization at specific genomic regions
-
Goldberg AD, Banaszynski LA, Noh KM, Lewis PW, et al. 2010. Distinct factors control histone variant H3.3 localization at specific genomic regions. Cell 140: 678-91.
-
(2010)
Cell
, vol.140
, pp. 678-691
-
-
Goldberg, A.D.1
Banaszynski, L.A.2
Noh, K.M.3
Lewis, P.W.4
-
10
-
-
77953955724
-
The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3.3
-
Drane P, Ouararhni K, Depaux A, Shuaib M, et al. 2010. The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3.3. Genes Dev 24: 1253-65.
-
(2010)
Genes Dev
, vol.24
, pp. 1253-1265
-
-
Drane, P.1
Ouararhni, K.2
Depaux, A.3
Shuaib, M.4
-
11
-
-
75149157164
-
A histone chaperone, DEK, transcriptionally coactivates a nuclear receptor
-
Sawatsubashi S, Murata T, Lim J, Fujiki R, et al. 2010. A histone chaperone, DEK, transcriptionally coactivates a nuclear receptor. Genes Dev 24: 159-70.
-
(2010)
Genes Dev
, vol.24
, pp. 159-170
-
-
Sawatsubashi, S.1
Murata, T.2
Lim, J.3
Fujiki, R.4
-
12
-
-
0025863511
-
The regulation of histone synthesis in the cell cycle
-
Osley MA. 1991. The regulation of histone synthesis in the cell cycle. Annu Rev Biochem 60: 827-61.
-
(1991)
Annu Rev Biochem
, vol.60
, pp. 827-861
-
-
Osley, M.A.1
-
13
-
-
33750449326
-
New histone incorporation marks sites of UV repair in human cells
-
Polo SE, Roche D, Almouzni G. 2006. New histone incorporation marks sites of UV repair in human cells. Cell 127: 481-93.
-
(2006)
Cell
, vol.127
, pp. 481-493
-
-
Polo, S.E.1
Roche, D.2
Almouzni, G.3
-
14
-
-
33947137710
-
Dynamics of replication-independent histone turnover in budding yeast
-
Dion MF, Kaplan T, Kim M, Buratowski S, et al. 2007. Dynamics of replication-independent histone turnover in budding yeast. Science 315: 1405-8.
-
(2007)
Science
, vol.315
, pp. 1405-1408
-
-
Dion, M.F.1
Kaplan, T.2
Kim, M.3
Buratowski, S.4
-
15
-
-
34547277498
-
Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1
-
Rufiange A, Jacques PE, Bhat W, Robert F, et al. 2007. Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1. Mol Cell 27: 393-405.
-
(2007)
Mol Cell
, vol.27
, pp. 393-405
-
-
Rufiange, A.1
Jacques, P.E.2
Bhat, W.3
Robert, F.4
-
16
-
-
27144510368
-
Genome-scale profiling of histone H3.3 replacement patterns
-
Mito Y, Henikoff JG, Henikoff S. 2005. Genome-scale profiling of histone H3.3 replacement patterns. Nat Genet 37: 1090-7.
-
(2005)
Nat Genet
, vol.37
, pp. 1090-1097
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
17
-
-
33947098453
-
Histone replacement marks the boundaries of cis-regulatory domains
-
Mito Y, Henikoff JG, Henikoff S. 2007. Histone replacement marks the boundaries of cis-regulatory domains. Science 315: 1408-11.
-
(2007)
Science
, vol.315
, pp. 1408-1411
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
18
-
-
77952996319
-
Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones
-
Deal RB, Henikoff JG, Henikoff S. 2010. Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones. Science 328: 1161-4.
-
(2010)
Science
, vol.328
, pp. 1161-1164
-
-
Deal, R.B.1
Henikoff, J.G.2
Henikoff, S.3
-
19
-
-
84879656010
-
H3.3-H4 tetramer splitting events feature cell-type specific enhancers
-
Huang C, Zhang Z, Xu M, Li Y, et al. 2013. H3.3-H4 tetramer splitting events feature cell-type specific enhancers. PLoS Genet 9: e1003558.
-
(2013)
PLoS Genet
, vol.9
-
-
Huang, C.1
Zhang, Z.2
Xu, M.3
Li, Y.4
-
20
-
-
84886731038
-
Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3
-
Kraushaar DC, Jin W, Maunakea A, Abraham B, et al. 2013. Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3. Genome Biol 14: R121.
-
(2013)
Genome Biol
, vol.14
-
-
Kraushaar, D.C.1
Jin, W.2
Maunakea, A.3
Abraham, B.4
-
21
-
-
77950462427
-
Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assembly
-
Xu M, Long C, Chen X, Huang C, et al. 2010. Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assembly. Science 328: 94-8.
-
(2010)
Science
, vol.328
, pp. 94-98
-
-
Xu, M.1
Long, C.2
Chen, X.3
Huang, C.4
-
22
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim TK, Hemberg M, Gray JM, Costa AM, et al. 2010. Widespread transcription at neuronal activity-regulated enhancers. Nature 465: 182-7.
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
-
23
-
-
84859582058
-
Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function
-
Lickwar CR, Mueller F, Hanlon SE, McNally JG, et al. 2012. Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function. Nature 484: 251-5.
-
(2012)
Nature
, vol.484
, pp. 251-255
-
-
Lickwar, C.R.1
Mueller, F.2
Hanlon, S.E.3
McNally, J.G.4
-
24
-
-
70249121045
-
The logic of chromatin architecture and remodelling at promoters
-
Cairns BR. 2009. The logic of chromatin architecture and remodelling at promoters. Nature 461: 193-8.
-
(2009)
Nature
, vol.461
, pp. 193-198
-
-
Cairns, B.R.1
-
25
-
-
37249012276
-
Nucleosome destabilization in the epigenetic regulation of gene expression
-
Henikoff S. 2008. Nucleosome destabilization in the epigenetic regulation of gene expression. Nat Rev Genet 9: 15-26.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 15-26
-
-
Henikoff, S.1
-
26
-
-
33646141366
-
Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II
-
Schwabish MA, Struhl K. 2006. Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II. Mol Cell 22: 415-22.
-
(2006)
Mol Cell
, vol.22
, pp. 415-422
-
-
Schwabish, M.A.1
Struhl, K.2
-
27
-
-
2942550662
-
Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes
-
Adkins MW, Howar SR, Tyler JK. 2004. Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes. Mol Cell 14: 657-66.
-
(2004)
Mol Cell
, vol.14
, pp. 657-666
-
-
Adkins, M.W.1
Howar, S.R.2
Tyler, J.K.3
-
28
-
-
84255162049
-
Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity
-
Ray-Gallet D, Woolfe A, Vassias I, Pellentz C, et al. 2011. Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity. Mol Cell 44: 928-41.
-
(2011)
Mol Cell
, vol.44
, pp. 928-941
-
-
Ray-Gallet, D.1
Woolfe, A.2
Vassias, I.3
Pellentz, C.4
-
29
-
-
27644515513
-
The histone H3.3 chaperone HIRA is essential for chromatin assembly in the male pronucleus
-
Loppin B, Bonnefoy E, Anselme C, Laurencon A, et al. 2005. The histone H3.3 chaperone HIRA is essential for chromatin assembly in the male pronucleus. Nature 437: 1386-90.
-
(2005)
Nature
, vol.437
, pp. 1386-1390
-
-
Loppin, B.1
Bonnefoy, E.2
Anselme, C.3
Laurencon, A.4
-
30
-
-
23144456323
-
Asymmetry in histone H3 variants and lysine methylation between paternal and maternal chromatin of the early mouse zygote
-
van der Heijden GW, Dieker JW, Derijck AA, Muller S, et al. 2005. Asymmetry in histone H3 variants and lysine methylation between paternal and maternal chromatin of the early mouse zygote. Mech Dev 122: 1008-22.
-
(2005)
Mech Dev
, vol.122
, pp. 1008-1022
-
-
van der Heijden, G.W.1
Dieker, J.W.2
Derijck, A.A.3
Muller, S.4
-
31
-
-
0034659751
-
The maternal effect mutation sesame affects the formation of the male pronucleus in Drosophila melanogaster
-
Loppin B, Docquier M, Bonneton F, Couble P. 2000. The maternal effect mutation sesame affects the formation of the male pronucleus in Drosophila melanogaster. Dev Biol 222: 392-404.
-
(2000)
Dev Biol
, vol.222
, pp. 392-404
-
-
Loppin, B.1
Docquier, M.2
Bonneton, F.3
Couble, P.4
-
32
-
-
84867897054
-
HIRA dependent H3.3 deposition is required for transcriptional reprogramming following nuclear transfer to Xenopus oocytes
-
Jullien J, Astrand C, Szenker E, Garrett N, et al. 2012. HIRA dependent H3.3 deposition is required for transcriptional reprogramming following nuclear transfer to Xenopus oocytes. Epigenetics Chromatin 5: 17.
-
(2012)
Epigenetics Chromatin
, vol.5
, pp. 17
-
-
Jullien, J.1
Astrand, C.2
Szenker, E.3
Garrett, N.4
-
33
-
-
84884889017
-
Transcription recovery after DNA damage requires chromatin priming by the H3.3 histone chaperone HIRA
-
Adam S, Polo SE, Almouzni G. 2013. Transcription recovery after DNA damage requires chromatin priming by the H3.3 histone chaperone HIRA. Cell 155: 94-106.
-
(2013)
Cell
, vol.155
, pp. 94-106
-
-
Adam, S.1
Polo, S.E.2
Almouzni, G.3
-
34
-
-
77649262618
-
ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells
-
Wong LH, McGhie JD, Sim M, Anderson MA, et al. 2010. ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells. Genome Res 20: 351-60.
-
(2010)
Genome Res
, vol.20
, pp. 351-360
-
-
Wong, L.H.1
McGhie, J.D.2
Sim, M.3
Anderson, M.A.4
-
35
-
-
22544450837
-
Histones are incorporated in trans during reassembly of the yeast PHO5 promoter
-
Schermer UJ, Korber P, Horz W. 2005. Histones are incorporated in trans during reassembly of the yeast PHO5 promoter. Mol Cell 19: 279-85.
-
(2005)
Mol Cell
, vol.19
, pp. 279-285
-
-
Schermer, U.J.1
Korber, P.2
Horz, W.3
-
36
-
-
84866114872
-
Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange
-
Smolle M, Venkatesh S, Gogol MM, Li H, et al. 2012. Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange. Nat Struct Mol Biol 19: 884-92.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 884-892
-
-
Smolle, M.1
Venkatesh, S.2
Gogol, M.M.3
Li, H.4
-
37
-
-
1242342240
-
Histone H3.3 is enriched in covalent modifications associated with active chromatin
-
McKittrick E, Gafken PR, Ahmad K, Henikoff S. 2004. Histone H3.3 is enriched in covalent modifications associated with active chromatin. Proc Natl Acad Sci USA 101: 1525-30.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1525-1530
-
-
McKittrick, E.1
Gafken, P.R.2
Ahmad, K.3
Henikoff, S.4
-
38
-
-
33749657892
-
PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state
-
Loyola A, Bonaldi T, Roche D, Imhof A, et al. 2006. PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state. Mol Cell 24: 309-16.
-
(2006)
Mol Cell
, vol.24
, pp. 309-316
-
-
Loyola, A.1
Bonaldi, T.2
Roche, D.3
Imhof, A.4
-
39
-
-
79953163378
-
Chromatin higher-order structures and gene regulation
-
Li G, Reinberg D. 2011. Chromatin higher-order structures and gene regulation. Curr Opin Genet Dev 21: 175-86.
-
(2011)
Curr Opin Genet Dev
, vol.21
, pp. 175-186
-
-
Li, G.1
Reinberg, D.2
-
40
-
-
84865292901
-
Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation
-
Yuan W, Wu T, Fu H, Dai C, et al. 2012. Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation. Science 337: 971-5.
-
(2012)
Science
, vol.337
, pp. 971-975
-
-
Yuan, W.1
Wu, T.2
Fu, H.3
Dai, C.4
-
41
-
-
84866497062
-
Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes
-
Venkatesh S, Smolle M, Li H, Gogol MM, et al. 2012. Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes. Nature 489: 452-5.
-
(2012)
Nature
, vol.489
, pp. 452-455
-
-
Venkatesh, S.1
Smolle, M.2
Li, H.3
Gogol, M.M.4
-
42
-
-
34250745886
-
Nucleosome stability mediated by histone variants H3.3 and H2A.Z
-
Jin C, Felsenfeld G. 2007. Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev 21: 1519-29.
-
(2007)
Genes Dev
, vol.21
, pp. 1519-1529
-
-
Jin, C.1
Felsenfeld, G.2
-
43
-
-
72749126285
-
H2A.Z and H3.3 histone variants affect nucleosome structure: biochemical and biophysical studies
-
Thakar A, Gupta P, Ishibashi T, Finn R, et al. 2009. H2A.Z and H3.3 histone variants affect nucleosome structure: biochemical and biophysical studies. Biochemistry 48: 10852-7.
-
(2009)
Biochemistry
, vol.48
, pp. 10852-10857
-
-
Thakar, A.1
Gupta, P.2
Ishibashi, T.3
Finn, R.4
-
44
-
-
84885353806
-
H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin
-
Chen P, Zhao J, Wang Y, Wang M, et al. 2013. H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin. Genes Dev 27: 2109-24.
-
(2013)
Genes Dev
, vol.27
, pp. 2109-2124
-
-
Chen, P.1
Zhao, J.2
Wang, Y.3
Wang, M.4
|