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Volumn 7, Issue 1, 2014, Pages

ChIP-less analysis of chromatin states

Author keywords

Affinity enrichment; Antibody free; Chromatin; Histone; Peptide microarray; PTM; Reader domain

Indexed keywords

DNA; HISTONE; PEPTIDE;

EID: 84899964206     PISSN: None     EISSN: 17568935     Source Type: Journal    
DOI: 10.1186/1756-8935-7-7     Document Type: Article
Times cited : (23)

References (44)
  • 1
    • 0034610814 scopus 로고    scopus 로고
    • The language of covalent histone modifications
    • 10.1038/47412 10638745
    • The language of covalent histone modifications. Strahl BD, Allis CD, Nature 2000 403 6765 41 45 10.1038/47412 10638745
    • (2000) Nature , vol.403 , Issue.6765 , pp. 41-45
    • Strahl, B.D.1    Allis, C.D.2
  • 6
    • 79151470871 scopus 로고    scopus 로고
    • Influence of combinatorial histone modifications on antibody and effector protein recognition
    • 10.1016/j.cub.2010.11.058 21167713
    • Influence of combinatorial histone modifications on antibody and effector protein recognition. Fuchs SM, Krajewski K, Baker RW, Miller VL, Strahl BD, Curr Biol 2011 21 1 53 58 10.1016/j.cub.2010.11.058 21167713
    • (2011) Curr Biol , vol.21 , Issue.1 , pp. 53-58
    • Fuchs, S.M.1    Krajewski, K.2    Baker, R.W.3    Miller, V.L.4    Strahl, B.D.5
  • 7
    • 79151476637 scopus 로고    scopus 로고
    • Detailed specificity analysis of antibodies binding to modified histone tails with peptide arrays
    • 10.4161/epi.6.2.13837 20962581
    • Detailed specificity analysis of antibodies binding to modified histone tails with peptide arrays. Bock I, Dhayalan A, Kudithipudi S, Brandt O, Rathert P, Jeltsch A, Epigenetics 2011 6 2 256 263 10.4161/epi.6.2.13837 20962581
    • (2011) Epigenetics , vol.6 , Issue.2 , pp. 256-263
    • Bock, I.1    Dhayalan, A.2    Kudithipudi, S.3    Brandt, O.4    Rathert, P.5    Jeltsch, A.6
  • 10
    • 84874978901 scopus 로고    scopus 로고
    • From spots to beads-PTM-peptide bead arrays for the characterization of anti-histone antibodies
    • 10.1002/pmic.201200383 23401470
    • From spots to beads-PTM-peptide bead arrays for the characterization of anti-histone antibodies. Heubach Y, Planatscher H, Sommersdorf C, Maisch D, Maier J, Joos TO, Templin MF, Poetz O, Proteomics 2013 13 6 1010 1015 10.1002/pmic.201200383 23401470
    • (2013) Proteomics , vol.13 , Issue.6 , pp. 1010-1015
    • Heubach, Y.1    Planatscher, H.2    Sommersdorf, C.3    Maisch, D.4    Maier, J.5    Joos, T.O.6    Templin, M.F.7    Poetz, O.8
  • 11
    • 84869237494 scopus 로고    scopus 로고
    • Broad ranges of affinity and specificity of anti-histone antibodies revealed by a quantitative peptide immunoprecipitation assay
    • 10.1016/j.jmb.2012.09.022 23041298
    • Broad ranges of affinity and specificity of anti-histone antibodies revealed by a quantitative peptide immunoprecipitation assay. Nishikori S, Hattori T, Fuchs SM, Yasui N, Wojcik J, Koide A, Strahl BD, Koide S, J Mol Biol 2012 424 5 391 399 10.1016/j.jmb.2012.09.022 23041298
    • (2012) J Mol Biol , vol.424 , Issue.5 , pp. 391-399
    • Nishikori, S.1    Hattori, T.2    Fuchs, S.M.3    Yasui, N.4    Wojcik, J.5    Koide, A.6    Strahl, B.D.7    Koide, S.8
  • 13
    • 79959967699 scopus 로고    scopus 로고
    • Antibody recognition of histone post-translational modifications: Emerging issues and future prospects
    • 10.2217/epi.11.23 22122332
    • Antibody recognition of histone post-translational modifications: emerging issues and future prospects. Fuchs SM, Strahl BD, Epigenomics 2011 3 3 247 249 10.2217/epi.11.23 22122332
    • (2011) Epigenomics , vol.3 , Issue.3 , pp. 247-249
    • Fuchs, S.M.1    Strahl, B.D.2
  • 14
    • 78650747491 scopus 로고    scopus 로고
    • Discovery and characterization of chromatin states for systematic annotation of the human genome
    • 10.1038/nbt.1662 20657582
    • Discovery and characterization of chromatin states for systematic annotation of the human genome. Ernst J, Kellis M, Nat Biotechnol 2010 28 8 817 825 10.1038/nbt.1662 20657582
    • (2010) Nat Biotechnol , vol.28 , Issue.8 , pp. 817-825
    • Ernst, J.1    Kellis, M.2
  • 20
    • 84869020448 scopus 로고    scopus 로고
    • Asymmetrically modified nucleosomes expand the histone code
    • 10.1038/nsmb.2433 23132382
    • Asymmetrically modified nucleosomes expand the histone code. van Rossum B, Fischle W, Selenko P, Nat Struct Mol Biol 2012 19 11 1064 1066 10.1038/nsmb.2433 23132382
    • (2012) Nat Struct Mol Biol , vol.19 , Issue.11 , pp. 1064-1066
    • Van Rossum, B.1    Fischle, W.2    Selenko, P.3
  • 21
    • 84861174704 scopus 로고    scopus 로고
    • Quantitative assessment of chromatin immunoprecipitation grade antibodies directed against histone modifications reveals patterns of co-occurring marks on histone protein molecules
    • 10.1074/mcp.M111.015941 22442256
    • Quantitative assessment of chromatin immunoprecipitation grade antibodies directed against histone modifications reveals patterns of co-occurring marks on histone protein molecules. Peach SE, Rudomin EL, Udeshi ND, Carr SA, Jaffe JD, Mol Cell Proteomics 2012 11 5 128 137 10.1074/mcp.M111.015941 22442256
    • (2012) Mol Cell Proteomics , vol.11 , Issue.5 , pp. 128-137
    • Peach, S.E.1    Rudomin, E.L.2    Udeshi, N.D.3    Carr, S.A.4    Jaffe, J.D.5
  • 22
    • 84874627227 scopus 로고    scopus 로고
    • The proteomic investigation of chromatin functional domains reveals novel synergisms among distinct heterochromatin components
    • 10.1074/mcp.M112.024307 23319141
    • The proteomic investigation of chromatin functional domains reveals novel synergisms among distinct heterochromatin components. Soldi M, Bonaldi T, Mol Cell Proteomics 2013 12 3 764 780 10.1074/mcp.M112.024307 23319141
    • (2013) Mol Cell Proteomics , vol.12 , Issue.3 , pp. 764-780
    • Soldi, M.1    Bonaldi, T.2
  • 23
    • 84870792079 scopus 로고    scopus 로고
    • Perceiving the epigenetic landscape through histone readers
    • 10.1038/nsmb.2436 23211769
    • Perceiving the epigenetic landscape through histone readers. Musselman CA, Lalonde ME, Cote J, Kutateladze TG, Nat Struct Mol Biol 2012 19 12 1218 1227 10.1038/nsmb.2436 23211769
    • (2012) Nat Struct Mol Biol , vol.19 , Issue.12 , pp. 1218-1227
    • Musselman, C.A.1    Lalonde, M.E.2    Cote, J.3    Kutateladze, T.G.4
  • 26
    • 84887203696 scopus 로고    scopus 로고
    • A general molecular affinity strategy for global detection and proteomic analysis of lysine methylation
    • 10.1016/j.molcel.2013.03.005 23583077
    • A general molecular affinity strategy for global detection and proteomic analysis of lysine methylation. Moore KE, Carlson SM, Camp ND, Cheung P, James RG, Chua KF, Wolf-Yadlin A, Gozani O, Mol Cell 2013 50 3 444 456 10.1016/j.molcel.2013.03.005 23583077
    • (2013) Mol Cell , vol.50 , Issue.3 , pp. 444-456
    • Moore, K.E.1    Carlson, S.M.2    Camp, N.D.3    Cheung, P.4    James, R.G.5    Chua, K.F.6    Wolf-Yadlin, A.7    Gozani, O.8
  • 31
    • 65149090563 scopus 로고    scopus 로고
    • Structure and site-specific recognition of histone H3 by the PHD finger of human autoimmune regulator
    • 10.1016/j.str.2009.02.017 19446523
    • Structure and site-specific recognition of histone H3 by the PHD finger of human autoimmune regulator. Chakravarty S, Zeng L, Zhou MM, Structure 2009 17 5 670 679 10.1016/j.str.2009.02.017 19446523
    • (2009) Structure , vol.17 , Issue.5 , pp. 670-679
    • Chakravarty, S.1    Zeng, L.2    Zhou, M.M.3
  • 32
    • 66249141300 scopus 로고    scopus 로고
    • The solution structure of the first PHD finger of autoimmune regulator in complex with non-modified histone H3 tail reveals the antagonistic role of H3R2 methylation
    • 10.1093/nar/gkp166 19293276
    • The solution structure of the first PHD finger of autoimmune regulator in complex with non-modified histone H3 tail reveals the antagonistic role of H3R2 methylation. Chignola F, Gaetani M, Rebane A, Org T, Mollica L, Zucchelli C, Spitaleri A, Mannella V, Peterson P, Musco G, Nucleic Acids Res 2009 37 9 2951 2961 10.1093/nar/gkp166 19293276
    • (2009) Nucleic Acids Res , vol.37 , Issue.9 , pp. 2951-2961
    • Chignola, F.1    Gaetani, M.2    Rebane, A.3    Org, T.4    Mollica, L.5    Zucchelli, C.6    Spitaleri, A.7    Mannella, V.8    Peterson, P.9    Musco, G.10
  • 33
    • 80052140473 scopus 로고    scopus 로고
    • Application of Celluspots peptide arrays for the analysis of the binding specificity of epigenetic reading domains to modified histone tails
    • 10.1186/1471-2091-12-48 21884582
    • Application of Celluspots peptide arrays for the analysis of the binding specificity of epigenetic reading domains to modified histone tails. Bock I, Kudithipudi S, Tamas R, Kungulovski G, Dhayalan A, Jeltsch A, BMC Biochem 2011 12 48 10.1186/1471-2091-12-48 21884582
    • (2011) BMC Biochem , vol.12 , pp. 48
    • Bock, I.1    Kudithipudi, S.2    Tamas, R.3    Kungulovski, G.4    Dhayalan, A.5    Jeltsch, A.6
  • 34
    • 84878838423 scopus 로고    scopus 로고
    • Multivalent histone engagement by the linked tandem Tudor and PHD domains of UHRF1 is required for the epigenetic inheritance of DNA methylation
    • 10.1101/gad.220467.113 23752590
    • Multivalent histone engagement by the linked tandem Tudor and PHD domains of UHRF1 is required for the epigenetic inheritance of DNA methylation. Rothbart SB, Dickson BM, Ong MS, Krajewski K, Houliston S, Kireev DB, Arrowsmith CH, Strahl BD, Genes Dev 2013 27 11 1288 1298 10.1101/gad.220467.113 23752590
    • (2013) Genes Dev , vol.27 , Issue.11 , pp. 1288-1298
    • Rothbart, S.B.1    Dickson, B.M.2    Ong, M.S.3    Krajewski, K.4    Houliston, S.5    Kireev, D.B.6    Arrowsmith, C.H.7    Strahl, B.D.8
  • 37
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • 10.1016/j.cell.2007.05.009 17512414
    • High-resolution profiling of histone methylations in the human genome. Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K, Cell 2007 129 4 823 837 10.1016/j.cell.2007.05.009 17512414
    • (2007) Cell , vol.129 , Issue.4 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6    Wei, G.7    Chepelev, I.8    Zhao, K.9
  • 38
    • 2642542643 scopus 로고    scopus 로고
    • A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin
    • 10.1101/gad.300704 15145825
    • A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin. Schotta G, Lachner M, Sarma K, Ebert A, Sengupta R, Reuter G, Reinberg D, Jenuwein T, Genes Dev 2004 18 11 1251 1262 10.1101/gad.300704 15145825
    • (2004) Genes Dev , vol.18 , Issue.11 , pp. 1251-1262
    • Schotta, G.1    Lachner, M.2    Sarma, K.3    Ebert, A.4    Sengupta, R.5    Reuter, G.6    Reinberg, D.7    Jenuwein, T.8
  • 39
    • 34547949573 scopus 로고    scopus 로고
    • A charge-based interaction between histone H4 and Dot1 is required for H3K79 methylation and telomere silencing: Identification of a new trans-histone pathway
    • 10.1101/gad.1560607 17675446
    • A charge-based interaction between histone H4 and Dot1 is required for H3K79 methylation and telomere silencing: identification of a new trans-histone pathway. Fingerman IM, Li HC, Briggs SD, Genes Dev 2007 21 16 2018 2029 10.1101/gad.1560607 17675446
    • (2007) Genes Dev , vol.21 , Issue.16 , pp. 2018-2029
    • Fingerman, I.M.1    Li, H.C.2    Briggs, S.D.3
  • 40
    • 33847386172 scopus 로고    scopus 로고
    • The site-specific installation of methyl-lysine analogs into recombinant histones
    • 10.1016/j.cell.2006.12.041 17350582
    • The site-specific installation of methyl-lysine analogs into recombinant histones. Simon MD, Chu F, Racki LR, de la Cruz CC, Burlingame AL, Panning B, Narlikar GJ, Shokat KM, Cell 2007 128 5 1003 1012 10.1016/j.cell.2006.12.041 17350582
    • (2007) Cell , vol.128 , Issue.5 , pp. 1003-1012
    • Simon, M.D.1    Chu, F.2    Racki, L.R.3    De La Cruz, C.C.4    Burlingame, A.L.5    Panning, B.6    Narlikar, G.J.7    Shokat, K.M.8
  • 41
    • 0033039285 scopus 로고    scopus 로고
    • Preparation of nucleosome core particle from recombinant histones
    • 10372352
    • Preparation of nucleosome core particle from recombinant histones. Luger K, Rechsteiner TJ, Richmond TJ, Methods Enzymol 1999 304 3 19 10372352
    • (1999) Methods Enzymol , vol.304 , pp. 3-19
    • Luger, K.1    Rechsteiner, T.J.2    Richmond, T.J.3
  • 43
    • 34248577604 scopus 로고    scopus 로고
    • Chemical derivatization of histones for facilitated analysis by mass spectrometry
    • 10.1038/nprot.2007.106 17446892
    • Chemical derivatization of histones for facilitated analysis by mass spectrometry. Garcia BA, Mollah S, Ueberheide BM, Busby SA, Muratore TL, Shabanowitz J, Hunt DF, Nat Protoc 2007 2 4 933 938 10.1038/nprot.2007.106 17446892
    • (2007) Nat Protoc , vol.2 , Issue.4 , pp. 933-938
    • Garcia, B.A.1    Mollah, S.2    Ueberheide, B.M.3    Busby, S.A.4    Muratore, T.L.5    Shabanowitz, J.6    Hunt, D.F.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.