Adaptations of anaerobic archaea to life under extreme energy limitation

FEMS Microbiology Reviews

Volumn 38, Issue 3, 2014, Pages 449-472

  Mayer, Florian ^a   Müller, Volker ^a  

^a GOETHE UNIVERSITY   (Germany)

Author keywords

Ech; Electrochemical ion potential; Hydrogenase; Phosphorylation potential; Rnf; Sodium bioenergetics

Indexed keywords

FERREDOXIN; FORMIC ACID; HYDROGEN; METHYLTRANSFERASE; NICOTINAMIDE ADENINE DINUCLEOTIDE; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; SODIUM; SULFUR;

ARCHAEON; BIOENERGY; CELL MEMBRANE; ELECTRON TRANSPORT; ENERGY CONSERVATION; ENZYME PHOSPHORYLATION; ENZYME STRUCTURE; EVOLUTIONARY ADAPTATION; IGNICOCCUS HOSPITALIS; LIFE; NANOARCHAEUM EQUITANS; NONHUMAN; OXIDATION; PROTEIN FUNCTION; PROTEIN QUATERNARY STRUCTURE; PYROCOCCUS FURIOSUS; REDUCTION; REVIEW; THERMOCOCCUS; THERMOCOCCUS ONNURINEUS; THERMODYNAMICS;

IGNICOCCUS; PYROCOCCUS; THERMOCOCCUS;

ECH; ELECTROCHEMICAL ION POTENTIAL; HYDROGENASE; PHOSPHORYLATION POTENTIAL; RNF; SODIUM BIOENERGETICS;

ADAPTATION, PHYSIOLOGICAL; ANAEROBIOSIS; ARCHAEA; ATP SYNTHETASE COMPLEXES; ENERGY METABOLISM;

EID: 84899913081     PISSN: 01686445     EISSN: 15746976     Source Type: Journal    
DOI: 10.1111/1574-6976.12043     Document Type: Review

References (175)

1. 1-ATPase from bovine heart mitochondria. Nature 370: 621-628.
2. Amend JP & Shock EL (2001) Energetics of overall metabolic reactions of thermophilic and hyperthermophilic archaea and bacteria. FEMS Microbiol Rev 25: 175-243.
3. Andrei AS, Banciu HL & Oren A (2012) Living with salt: metabolic and phylogenetic diversity of archaea inhabiting saline ecosystems. FEMS Microbiol Lett 330: 1-9.
4. Arata Y, Baleja JD & Forgac M (2002) Localization of subunits D, E, and G in the yeast V-ATPase complex using cysteine-mediated cross-linking to subunit B. Biochemistry 41: 11301-11307.
5. Averhoff B (2009) Shuffling genes around in hot environments: the unique DNA transporter of Thermus thermophilus. FEMS Microbiol Rev 33: 611-626.
6. Bae SS, Kim YJ, Yang SH, Lim JK, Jeon JH, Lee HS, Kang SG, Kim SJ & Lee JH (2006) Thermococcus onnurineus sp nov., a hyperthermophilic Archaeon isolated from a deep-sea hydrothermal vent area at the PACMANUS field. J Microbiol Biotechnol 16: 1826-1831.
7. Balakrishna AM, Hunke C & Grüber G (2012) The structure of subunit E of the Pyrococcus horikoshii OT3 A-ATP synthase gives insight into the elasticity of the peripheral stalk. J Mol Biol 420: 155-163.
8. Batista AP & Pereira MM (2011) Sodium influence on energy transduction by complexes I from Escherichia coli and Paracoccus denitrificans. Biochim Biophys Acta 1807: 286-292.
9. Batista AP, Fernandes AS, Louro RO, Steuber J & Pereira MM (2010) Energy conservation by Rhodothermus marinus respiratory complex I. Biochim Biophys Acta 1797: 509-515.
10. Belay N, Mukhopadhyay B, Conway de Macario E, Galask R & Daniels L (1990) Methanogenic bacteria in human vaginal samples. J Clin Microbiol 28: 1666-1668.
11. +-ATPase/synthase by electron microscopy. Structure 12: 1789-1798.
12. + oxidoreductase. P Natl Acad Sci USA 107: 18138-18142.
13. Biegel E, Schmidt S, González JM & Müller V (2011) Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes. Cell Mol Life Sci 68: 613-634.
14. Blamey JM & Adams MW (1993) Purification and characterization of pyruvate ferredoxin oxidoreductase from the hyperthermophilic archaeon Pyrococcus furiosus. Biochim Biophys Acta 1161: 19-27.
15. Blaut M, Müller V & Gottschalk G (1992) Energetics of methanogenesis studied in vesicular systems. J Bioenerg Biomembr 24: 529-546.
16. Blöchl E, Rachel R, Burggraf S, Hafenbradl D, Jannasch HW & Stetter KO (1997) Pyrolobus fumarii, gen. and sp. nov., represents a novel group of archaea, extending the upper temperature limit for life to 113°C. Extremophiles 1: 14-21.
17. Bowman EJ, Tenney K & Bowman BJ (1988) Isolation of genes encoding the Neurospora vacuolar ATPase. Analysis of vma-1 encoding the 67 kDa subunit reveals homology to other ATPases. J Biol Chem 263: 13994-14001.
18. Boyer PD (1989) A perspective of the binding change mechanism for ATP synthesis. FASEB J 3: 2164-2178.
19. Boyer PD (1997) The ATP synthase - a splendid molecular machine. Annu Rev Biochem 66: 717-749.
20. Brandt U (2011) A two-state stabilization-change mechanism for proton-pumping complex I. Biochim Biophys Acta 1807: 1364-1369.
21. Bräsen C, Schmidt M, Grotzinger J & Schönheit P (2008) Reaction mechanism and structural model of ADP-forming Acetyl-CoA synthetase from the hyperthermophilic archaeon Pyrococcus furiosus: evidence for a second active site histidine residue. J Biol Chem 283: 15409-15418.
22. Brochier-Armanet C, Boussau B, Gribaldo S & Forterre P (2008) Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 6: 245-252.
23. Bryant FO & Adams MW (1989) Characterization of hydrogenase from the hyperthermophilic archaebacterium, Pyrococcus furiosus. J Biol Chem 264: 5070-5079.
24. + translocating ferredoxin oxidation. Biochim Biophys Acta 1827: 94-113.
25. 1-ATPase from Methanosarcina mazei Gö1. J Biol Chem 279: 22759-22764.
26. +/ATP stoichiometry. FEBS Lett 576: 1-4.
27. 1 ATPases and synthases. FEBS Lett 259: 22227-22229.
28. Deppenmeier U (2002a) The unique biochemistry of methanogenesis. Prog Nucleic Acid Res Mol Biol 71: 223-283.
29. Deppenmeier U (2002b) Redox-driven proton translocation in methanogenic archaea. Cell Mol Life Sci 59: 1-21.
30. Deppenmeier U & Müller V (2008) Life close to the thermodynamic limit: how methanogenic archaea conserve energy. Results Probl Cell Differ 45: 123-152.
31. 2:heterodisulfide oxidoreductase, a second energy- conserving system in the methanogenic strain Gö1. Arch Microbiol 155: 272-277.
32. +-translocating ATPase of Propionigenium modestum. Acta Physiol Scand 146: 97-102.
33. Dirmeier R, Keller M, Frey G, Huber H & Stetter KO (1998) Purification and properties of an extremely thermostable membrane-bound sulfur-reducing complex from the hyperthermophilic Pyrodictium abyssi. Eur J Biochem 252: 486-491.
34. Dolfing J, Jiang B, Henstra AM, Stams AJ & Plugge CM (2008) Syntrophic growth on formate: a new microbial niche in anoxic environments. Appl Environ Microbiol 74: 6126-6131.
35. Dröse S, Krack S, Sokolova L et al. (2011) Functional dissection of the proton pumping modules of mitochondrial complex I. PLoS Biol 9: e1001128.
36. Efremov RG, Baradaran R & Sazanov LA (2010) The architecture of respiratory complex I. Nature 465: 441-445.
37. Fiala G & Stetter KO (1986) Pyrococcus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100°C. Arch Microbiol 145: 56-61.
38. Forgac M (2007) Vacuolar ATPases: rotary proton pumps in physiology and pathophysiology. Nat Rev Mol Cell Biol 8: 917-929.
39. 2 for methane formation and ATP synthesis. J Bacteriol 188: 642-658.
40. O ATP synthase. FEBS J 275: 1999-2007.
41. O adenosine triphosphate synthase and its interaction with the nucleotide-binding subunit B. Biochemistry 46: 11684-11694.
42. Giannone RJ, Huber H, Karpinets T, Heimerl T, Kuper U, Rachel R, Keller M, Hettich RL & Podar M (2011) Proteomic characterization of cellular and molecular processes that enable the Nanoarchaeum equitans-Ignicoccus hospitalis relationship. PLoS ONE 6: e22942.
43. +-translocating methyltransferase complex from methanogenic archaea. Biochim Biophys Acta 1505: 28-36.
44. + antiporter system of alkalophilic Bacillus species strain C-125. Mol Microbiol 14: 939-946.
45. + proteins: have engine, will work. Nat Rev Mol Cell Biol 6: 519-529.
46. Harold FM (1986) The Vital Force: A Study of Bioenergetics. W.H. Freeman, New York.
47. Hedderich R (2004) Energy-converting [NiFe] hydrogenases from archaea and extremophiles: ancestors of complex I. J Bioenerg Biomembr 36: 65-75.
48. Hedderich R, Klimmek O, Kröger A, Dirmeier R, Keller M & Stetter KO (1999) Anaerobic respiration with elemental sulfur and with disulfides. FEMS Microbiol Rev 22: 353-381.
49. O-ATP synthases of alkaliphilic bacteria: lessons from their adaptations. Biochim Biophys Acta 1797: 1362-1377.
50. +-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae. J Biol Chem 265: 6726-6733.
51. 1-ATP synthase for the regulation. Biochim Biophys Acta 1555: 140-146.
52. Hoehler TM, Alperin MJ, Albert DB & Martens CS (2001) Apparent minimum free energy requirements for methanogenic archaea and sulfate-reducing bacteria in an anoxic marine sediment. FEMS Microbiol Ecol 38: 33-41.
53. Holler T, Wegener G, Niemann H, Deusner C, Ferdelman TG, Boetius A, Brunner B & Widdel F (2011) Carbon and sulfur back flux during anaerobic microbial oxidation of methane and coupled sulfate reduction. P Natl Acad Sci USA 108: 1484-1490.
54. Huber H, Burggraf S, Mayer T, Wyschkony I, Rachel R & Stetter KO (2000) Ignicoccus gen. nov., a novel genus of hyperthermophilic, chemolithoautotrophic archaea, represented by two new species, Ignicoccus islandicus sp nov and Ignicoccus pacificus sp nov. Int J Syst Evol Microbiol 50: 2093-2100.
55. Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC & Stetter KO (2002) A new phylum of archaea represented by a nanosized hyperthermophilic symbiont. Nature 417: 63-67.
56. Huber H, Küper U, Daxer S & Rachel R (2012) The unusual cell biology of the hyperthermophilic Crenarchaeon Ignicoccus hospitalis. Antonie Van Leeuwenhoek 102: 203-219.
57. O ATP synthase. Biochim Biophys Acta 1808: 2111-2118.
58. Hunte C, Zickermann V & Brandt U (2010) Functional modules and structural basis of conformational coupling in mitochondrial complex I. Science 329: 448-451.
59. Ihara K, Watanabe S, Sugimura K & Mukohata Y (1997) Identification of proteolipid from an extremely halophilic archaeon Halobacterium salinarum as an N′, N′-dicyclohexyl-carbodiimide binding subunit of ATP synthase. Arch Biochem Biophys 341: 267-272.
60. +-driven flagellar motors. J Bioenerg Biomembr 21: 705-716.
61. Inatomi KI, Maeda M & Futai M (1989) Dicyclohexylcarbodiimide-binding protein is a subunit of the Methanosarcina barkeri ATPase complex. Biochem Biophys Res Commun 162: 1585-1590.
62. Iwata M, Imamura H, Stambouli E et al. (2004) Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase. P Natl Acad Sci USA 101: 59-64.
63. Jahn U, Gallenberger M, Paper W, Junglas B, Eisenreich W, Stetter KO, Rachel R & Huber H (2008) Nanoarchaeum equitans and Ignicoccus hospitalis: new insights into a unique, intimate association of two archaea. J Bacteriol 190: 1743-1750.
64. Jenney FE Jr & Adams MW (2008) Hydrogenases of the model hyperthermophiles. Ann NY Acad Sci 1125: 252-266.
65. Jetten MSM, Stams AJM & Zehnder AJB (1991) Adenine nucleotide content and energy charge of Methanothrix soehngenii during acetate degradation. FEMS Microbiol Lett 84: 313-317.
66. +-transporting ATP synthase. Functional dimers and trimers and determination of stoichiometry by cross-linking analysis. J Biol Chem 273: 29701-29705.
67. +-pumping NADH:quinone oxidoreductase. Biochim Biophys Acta 1817: 1823-1832.
68. +-ATPase. J Bioenerg Biomembr 35: 313-321.
69. +-ATPase of growing and resting, aerobic Escherichia coli. Biochemistry 21: 5534-5538.
70. Kaster AK, Moll J, Parey K & Thauer RK (2011) Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea. P Natl Acad Sci USA 108: 2981-2986.
71. 2 production. Nature 467: 352-355.
72. Krebs MP & Khorana HG (1993) Mechanism of light-dependent proton translocation by bacteriorhodopsin. J Bacteriol 175: 1555-1560.
73. Krulwich TA, Ito M, Gilmour R, Sturr MG, Guffanti AA & Hicks DB (1996) Energetic problems of extremely alkaliphilic aerobes. Biochim Biophys Acta 1275: 21-26.
74. Kulik EM, Sandmeier H, Hinni K & Meyer J (2001) Identification of archaeal rDNA from subgingival dental plaque by PCR amplification and sequence analysis. FEMS Microbiol Lett 196: 129-133.
75. O ATP synthase in complex with adenosine diphosphate. Acta Crystallogr D Biol Crystallogr 64: 1110-1115.
76. Kumar A, Manimekalai MS, Balakrishna AM, Jeyakanthan J & Grüber G (2010) Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution. J Mol Biol 396: 301-320.
77. Küper U, Meyer C, Müller V, Rachel R & Huber H (2010) Energized outer membrane and spatial separation of metabolic processes in the hyperthermophilic Archaeon Ignicoccus hospitalis. P Natl Acad Sci USA 107: 3152-3156.
78. Kurr M, Huber R, Konig H, Jannasch HW, Fricke H, Trincone A, Kristjansson JK & Stetter KO (1991) Methanopyrus kandleri, gen. and sp. nov. represents a novel group of hyperthermophilic methanogens, growing at 110°C. Arch Microbiol 156: 239-247.
79. Lane N & Martin WF (2012) The origin of membrane bioenergetics. Cell 151: 1406-1416.
80. +-driven ATP synthase. Nature 481: 214-218.
81. +-ATPase/synthase. Nat Struct Mol Biol 17: 373-378.
82. Lepp PW, Brinig MM, Ouverney CC, Palm K, Armitage GC & Relman DA (2004) Methanogenic archaea and human periodontal disease. P Natl Acad Sci USA 101: 6176-6181.
83. Lewalter K & Müller V (2006) Bioenergetics of archaea: ancient energy conserving mechanisms developed in the early history of life. Biochim Biophys Acta 1757: 437-445.
84. Li Q, Li L, Rejtar T, Lessner DJ, Karger BL & Ferry JG (2006) Electron transport in the pathway of acetate conversion to methane in the marine archaeon Methanosarcina acetivorans. J Bacteriol 188: 702-710.
85. Ma K & Adams MW (2001) Hydrogenases I and II from Pyrococcus furiosus. Methods Enzymol 331: 208-216.
86. Ma K, Weiss R & Adams MW (2000) Characterization of hydrogenase II from the hyperthermophilic archaeon Pyrococcus furiosus and assessment of its role in sulfur reduction. J Bacteriol 182: 1864-1871.
87. Macario AJ, Lange M, Ahring BK & Conway de Macario E (1999) Stress genes and proteins in the archaea. Microbiol Mol Biol Rev 63: 923-967.
88. Martins LO & Santos H (1995) Accumulation of mannosylglycerate and di-myo-inositol-phosphate by Pyrococcus furiosus in response to salinity and temperature. Appl Environ Microbiol 61: 3299-3303.
89. Martins LO, Huber R, Huber H, Stetter KO, DaCosta MS & Santos H (1997) Organic solutes in hyperthermophilic archaea. Appl Environ Microbiol 63: 896-902.
90. 13 ring from a thermoalkaliphilic ATP synthase reveals an extended diameter due to a special structural region. J Mol Biol 388: 611-618.
91. +) binding site in an archaeal ATP synthase: implications for c ring function and structure. J Biol Chem 287: 39327-39337.
92. Mayer F, Küper U, Meyer C, Daxer S, Müller V, Rachel R & Huber H (2012b) AMP-forming acetyl coenzyme A synthetase in the outermost membrane of the hyperthermophilic crenarchaeon Ignicoccus hospitalis. J Bacteriol 194: 1572-1581.
93. O-ATP synthase of Methanobrevibacter ruminantium couples sodium ions for ATP synthesis under physiological conditions. J Biol Chem 286: 39882-39892.
94. +-ATPase from Ilyobacter tartaricus. Science 308: 659-662.
95. Meier T, Morgner N, Matthies D, Pogoryelov D, Keis S, Cook GM, Dimroth P & Brutschy B (2007) A tridecameric c ring of the adenosine triphosphate (ATP) synthase from the thermoalkaliphilic Bacillus sp. strain TA2.A1 facilitates ATP synthesis at low electrochemical proton potential. Mol Microbiol 65: 1181-1192.
96. +-dependent F-ATP synthases. J Mol Biol 391: 498-507.
97. Mesbah NM & Wiegel J (2012) Life under multiple extreme conditions: diversity and physiology of the halophilic alkalithermophiles. Appl Environ Microbiol 78: 4074-4082.
98. Miller TL & Wolin MJ (1982) Enumeration of Methanobrevibacter smithii in human feces. Arch Microbiol 131: 14-18.
99. Mitchell P (1966) Chemiosmotic coupling in oxidative and photosynthetic phosphorylation. Biol Rev Camb Philos Soc 41: 445-502.
100. +/ATP ratio and permissive elastic coupling. P Natl Acad Sci USA 101: 12159-12164.
101. Moissl C, Rudolph C, Rachel R, Koch M & Huber R (2003) In situ growth of the novel SM1 euryarchaeon from a string-of-pearls-like microbial community in its cold biotope, its physical separation and insights into its structure and physiology. Arch Microbiol 180: 211-217.
102. Mukohata Y, Ihara K, Tamura T & Sugiyama Y (1999) Halobacterial rhodopsins. J Biochem 125: 649-657.
103. Mukund S & Adams MW (1995) Glyceraldehyde-3-phosphate ferredoxin oxidoreductase, a novel tungsten-containing enzyme with a potential glycolytic role in the hyperthermophilic archaeon Pyrococcus furiosus. J Biol Chem 270: 8389-8392.
104. Mulkidjanian AY, Dibrov P & Galperin MY (2008) The past and present of sodium energetics: may the sodium-motive force be with you. Biochim Biophys Acta 1777: 985-992.
105. O ATPases: from multimeric to monomeric rotors comprising 6-13 ion binding sites. J Bioenerg Biomembr 36: 115-125.
106. Müller V & Grüber G (2003) ATP synthases: structure, function and evolution of unique energy converters. Cell Mol Life Sci 60: 474-494.
107. 2 by Methanosarcina barkeri. Eur J Biochem 178: 519-525.
108. O ATPases from methanogenic archaea. J Bioenerg Biomembr 31: 15-28.
109. O-ATPase with a mixed oligomer of 8 and 16 kDa proteolipids. Biochim Biophys Acta 1505: 108-120.
110. +-translocating ATPase from Enterococcus hirae. J Bioenerg Biomembr 37: 411-413.
111. +-ATPase from Enterococcus hirae. Science 308: 654-659.
112. Nakanishi-Matsui M, Sekiya M, Nakamoto RK & Futai M (2010) The mechanism of rotating proton pumping ATPases. Biochim Biophys Acta 1797: 1343-1352.
113. +-ATPase - one of the most fundamental ion pumps in nature. J Exp Biol 172: 19-27.
114. Nicholls DG & Ferguson SJ (1992) Bioenergetics, 2nd edn. Academic, London.
115. Oesterhelt D & Tittor J (1989) Two pumps, one principle: light-driven ion transport in halobacteria. Trends Biochem Sci 14: 57-61.
116. Olendzenski L, Hilario E & Gogarten JP (1998) Horizontal gene transfer and fusing lines of descent: the archaeabacteria - a chimera? Horizontal Gene Transfer (Syvanen M & Kado C, eds), pp. 349-362. Chapman & Hall, London.
117. Paper W, Jahn U, Hohn MJ, Kronner M, Näther DJ, Burghardt T, Rachel R, Stetter KO & Huber H (2007) Ignicoccus hospitalis sp. nov., the host of 'Nanoarchaeum equitans'. Int J Syst Evol Microbiol 57: 803-808.
118. +-ATP synthases from yeast and from chloroplast. P Natl Acad Sci USA 109: 11150-11155.
119. O ATP synthase from the hyperthermophilic archaeon Pyrococcus furiosus. FEBS J 274: 3928-3938.
120. Poehlein A, Schmidt S, Kaster A-K et al. (2012) An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis. PLoS ONE 7: e33439.
121. Pogoryelov D, Yildiz O, Faraldo-Gómez JD & Meier T (2009) High-resolution structure of the rotor ring of a proton-dependent ATP synthase. Nat Struct Mol Biol 16: 1068-1073.
122. O-ATP synthase rotor ring. PLoS Biol 8: e1000443.
123. +-ATPase. J Biol Chem 266: 24564-24572.
124. Rachel R, Wyschkony I, Riehl S & Huber H (2002) The ultrastructure of Ignicoccus: evidence for a novel outer membrane and for intracellular vesicle budding in an archaeon. Archaea 1: 9-18.
125. Robb FT & Clark DS (1999) Adaptation of proteins from hyperthermophiles to high pressure and high temperature. J Mol Microbiol Biotechnol 1: 101-105.
126. Robb FT, Maeder DL, Brown JR, DiRuggiero J, Stump MD, Yeh RK, Weiss RB & Dunn DM (2001) Genomic sequence of hyperthermophile Pyrococcus furiosus: implications for physiology and enzymology. Methods Enzymol 330: 134-157.
127. Rohlin L & Gunsalus RP (2010) Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A. BMC Microbiol 10: 62.
128. O ATP synthase from Methanococcus jannaschii has six predicted transmembrane helices but only two proton-translocating carboxyl groups. J Biol Chem 274: 25281-25284.
129. O ATPase from the cytoplasmic membrane of methanogenic archaea by chloroform/methanol and characterization of subunit c of Methanothermobacter thermoautotrophicus as a 16-kDa proteolipid. FEMS Microbiol Lett 195: 47-51.
130. Sapra R, Bagramyan K & Adams MWW (2003) A simple energy-conserving system: proton reduction coupled to proton translocation. P Natl Acad Sci USA 100: 7545-7550.
131. Schäfer G, Engelhard M & Müller V (1999) Bioenergetics of the Archaea. Microbiol Mol Biol Rev 63: 570-620.
132. Schink B (1997) Energetics of syntrophic cooperation in methanogenic degradation. Microbiol Mol Biol Rev 61: 262-280.
133. Schiraldi C, Giuliano M & De Rosa M (2002) Perspectives on biotechnological applications of archaea. Archaea 1: 75-86.
134. + bioenergetics in methanogenic archaea. Biochem Soc Trans 41: 421-426.
135. Schlegel K, Welte C, Deppenmeier U & Müller V (2012a) Electron transport during aceticlastic methanogenesis by Methanosarcina acetivorans involves a sodium-translocating Rnf complex. FEBS J 279: 4444-4452.
136. + translocation. P Natl Acad Sci USA 109: 947-952.
137. Schleper C & Nicol GW (2010) Ammonia-oxidising archaea - physiology, ecology and evolution. Adv Microb Physiol 57: 1-41.
138. 2 in the apparent absence of an electrochemical proton potential across the cytoplasmic membrane. Eur J Biochem 148: 545-550.
139. Schut GJ, Boyd ES, Peters JW & Adams MW (2012) The modular respiratory complexes involved in hydrogen and sulfur metabolism by heterotrophic hyperthermophilic archaea and their evolutionary implications. FEMS Microbiol Rev 37: 182-203.
140. Senior AE (1988) ATP synthesis by oxidative phosphorylation. Physiol Rev 68: 177-231.
141. Sharma A, Kawarabayasi Y & Satyanarayana T (2012) Acidophilic bacteria and archaea: acid stable biocatalysts and their potential applications. Extremophiles 16: 1-19.
142. Slater EC, Rosing J & Mol A (1973) The phosphorylation potential generated by respiring mitochondria. Biochim Biophys Acta 292: 534-553.
143. Slesarev AI, Mezhevaya KV, Makarova KS et al. (2002) The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens. P Natl Acad Sci USA 99: 4644-4649.
144. Somero GN (1995) Proteins and temperature. Annu Rev Physiol 57: 43-68.
145. Stams AJ & Plugge CM (2009) Electron transfer in syntrophic communities of anaerobic bacteria and archaea. Nat Rev Microbiol 7: 568-577.
146. Steinert K, Wagner V, Kroth-Pancic PG & Bickel-Sandkötter S (1997) Characterization and subunit structure of the ATP synthase of the halophilic archaeon Haloferax volcanii and organization of the ATP synthase genes. J Biol Chem 272: 6261-6269.
147. Sterner R & Liebl W (2001) Thermophilic adaptation of proteins. Crit Rev Biochem Mol Biol 36: 39-106.
148. Stetter KO (1999) Extremophiles and their adaptation to hot environments. FEBS Lett 452: 22-25.
149. Stetter KO (2006) History of discovery of the first hyperthermophiles. Extremophiles 10: 357-362.
150. Stetter KO, König H & Stackebrandt E (1983) Pyrodictium gen. nov., a new genus of submarine disc-shaped sulphur reducing archaebacteria growing optimally at 105°C. Syst Appl Microbiol 4: 535-551.
151. Stewart AG, Lee LK, Donohoe M, Chaston JJ & Stock D (2012) The dynamic stator stalk of rotary ATPases. Nat Commun 3: 687.
152. Teague WE Jr & Dobson GP (1999) Thermodynamics of the arginine kinase reaction. J Biol Chem 274: 22459-22463.
153. Thauer RK (1998) Biochemistry of methanogenesis: a tribute to Marjory Stephenson. Microbiology 144: 2377-2406.
154. Thauer RK, Jungermann K & Decker K (1977) Energy conservation in chemotrophic anaerobic bacteria. Bacteriol Rev 41: 100-180.
155. Thauer RK, Kaster AK, Seedorf H, Buckel W & Hedderich R (2008) Methanogenic archaea: ecologically relevant differences in energy conservation. Nat Rev Microbiol 6: 579-591.
156. + is translocated at NADH:quinone oxidoreductase segment in the respiratory chain of Vibrio alginolyticus. J Biol Chem 259: 7785-7790.
157. van de Vossenberg JLCM, Ubbink-Kok T, Elferink MGL, Driessen AJM & Konings WN (1995) Ion permeability of the cytoplasmic membrane limits the maximum growth temperature of bacteria and archaea. Mol Microbiol 18: 925-932.
158. van der Oost J, Schut G, Kengen SW, Hagen WR, Thomm M & de Vos WM (1998) The ferredoxin-dependent conversion of glyceraldehyde-3-phosphate in the hyperthermophilic archaeon Pyrococcus furiosus represents a novel site of glycolytic regulation. J Biol Chem 273: 28149-28154.
159. 14 rotor ring of the proton translocating chloroplast ATP synthase. J Biol Chem 284: 18228-18235.
160. O ATP synthase from the hyperthermophilic archaeon Pyrococcus furiosus by electron microscopy. J Biol Chem 284: 10110-10119.
161. Walker JE, Saraste M, Runswick MJ & Gay NJ (1982) Distantly related sequences in the alpha- and beta- subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1: 945-951.
162. Waters E, Hohn MJ, Ahel I et al. (2003) The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. P Natl Acad Sci USA 100: 12984-12988.
163. Watt IN, Montgomery MG, Runswick MJ, Leslie AG & Walker JE (2010) Bioenergetic cost of making an adenosine triphosphate molecule in animal mitochondria. P Natl Acad Sci USA 107: 16823-16827.
164. 1-ATPase. J Biol Chem 271: 3474-3477.
165. Weber J, Bowman C, Wilkemounts S & Senior AE (1995) Alpha-aspartate 261 is a key residue in noncatalytic sites of Escherichia coli F-1-ATPase. J Biol Chem 270: 21045-21049.
166. Welte C, Krätzer C & Deppenmeier U (2010a) Involvement of Ech hydrogenase in energy conservation of Methanosarcina mazei. FEBS J 277: 3396-3403.
167. Welte C, Kallnik V, Grapp M, Bender G, Ragsdale S & Deppenmeier U (2010b) Function of Ech hydrogenase in ferredoxin-dependent, membrane-bound electron transport in Methanosarcina mazei. J Bacteriol 192: 674-678.
168. + V-ATPase. J Exp Biol 203(Pt 1): 127-135.
169. O ATPase from the archaeon Methanosarcina mazei Gö1. J Biol Chem 271: 18843-18852.
170. Wolfe RS (1992) Biochemistry of methanogenesis. Archaebacteria: Biochemistry and Biotechnology, Vol. 58, (Danson MJ, Hough DW & Lunt GG, eds), pp. 41-49. Biochemical Soc, London.
171. +- ATPase complex. J Biol Chem 274: 28909-28915.
172. Yoshida M, Muneyuki E & Hisabori T (2001) ATP synthase - a marvellous rotary engine of the cell. Nat Rev Mol Cell Biol 2: 669-677.
173. Zillig W, Holz I, Janekovic D, Klenk HP, Imsel E, Trent J, Wunderl S, Forjaz VH, Coutinho R & Ferreira T (1990) Hyperthermus butylicus, a hyperthermophilic sulfur-reducing archaebacterium that ferments peptides. J Bacteriol 172: 3959-3965.
174. 1-ATPases. J Biol Chem 263: 9102-9112.
175. Zinder SH (1993) Physiological Ecology of Methanogens. Chapman & Hall, New York, NY.