An Exceptional Variability in the Motor of Archaeal A 1 A 0 ATPases: From Multimeric to Monomeric Rotors Comprising 6-13 Ion Binding Sites

Journal of Bioenergetics and Biomembranes

Volumn 36, Issue 1, 2004, Pages 115-125

  Müller, Volker ^a  

^a UNIVERSITY OF MUNICH   (Germany)

Author keywords

A 1 A 0 ATPase; Archaea; Ion specificity; Methanogens; Rotor diversity

Indexed keywords

ADENOSINE TRIPHOSPHATASE; MOLECULAR MOTOR; PROTON; SODIUM ION;

ARCHAEBACTERIUM; BINDING SITE; ENZYME ACTIVITY; ENZYME STRUCTURE; EVOLUTION; GENE SEQUENCE; NONHUMAN; PHYSICAL CHEMISTRY; PROTEIN DOMAIN; SHORT SURVEY; STOICHIOMETRY;

ARCHAEA; STATOR;

EID: 2542487925     PISSN: 0145479X     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:JOBB.0000019603.68282.04     Document Type: Short Survey

References (79)

1. Abrahams, J. P., Leslie, A. G. W., Lutter, R., and Walker, J. E. (1994). Nature 370, 621-628.
2. Adams, M. W. W. (1994). FEMS Microbiol. Rev. 15, 261-277.
3. Aufurth, S., Schägger, H., and Müller, V. (2000). J. Biol. Chem. 275, 33297-33301.
4. Becher, B., and Müller, V. (1994). J. Bacteriol. 176, 2543-2550.
5. Bickel-Sandkötter, S., Gärtner, W., and Dane, M. (1996). Arch. Microbiol. 166, 1-11.
6. Boyer, P. D. (1997). Annu. Rev. Biochem. 66, 717-749.
7. Coskun, Ü., Grüber, G., Koch, M. H., Godovac-Zimmermann, J., Lemker, T., and Müller, V. (2002). J. Biol. Chem. 277, 17327-17333.
8. Cross, R. L., and Taiz, L. (1990). FEBS Lett. 259, 22227-22229.
9. Danson, M. J. (1993). In The Biochemistry of Archaea (Kates, M., Kushner, D. J., and Matheson, A. T., eds.), Elsevier, Amsterdam, pp. 1-24.
10. Deckers-Hebestreit, G., and Altendorf, K. (1996). Annu. Rev. Microbiol. 50, 791-824.
11. Deppenmeier, U., Johann, A., Hartsch, T., Merkl, R., Schmitz, R. A., Martinez-Arias, R., Henne, A., Wiezer, A., Bäumer, S., Jacobi, C., Brüggemann, H., Lienard, T., Christmann, A., Bömeke, M., Stec kel, S., Bhattacharyya, A., Lykidis, A., Overbeek, R., Klenk, H.-P., Gunsalus, R. P., Fritz, H.-J., and Gottschalk, G. (2002). J. Mol. Microbiol. Biotechnol. 4, 453-461.
12. Deppenmeier, U., Müller, V., and Gottschalk, G. (1996). Arch. Microbiol. 165, 149-163.
13. Dimroth, P. (1997). Biochim. Biophys. Acta 1318, 11-51.
14. Dimroth, P., Kaim, G., and Matthey, U. (1998). Biochim. Biophys. Acta 1365, 87-92.
15. Dimroth, P., Matthey, U., and Kaim, G. (2000). Biochim. Biophys. Acta 1459, 506-513.
16. Dimroth, P., Wang, H., Grabe, M., and Oster, G. (1999). Proc. Natl. Acad. Sci. U.S.A. 96, 4924-4929.
17. Fillingame, R. H., Jiang, W., Dmitriev, O. Y., and Jones, P. C. (2000). Biochim. Biophys. Acta 1458, 387-403.
18. Galagan, J. E., Nusbaum, C., Roy, A., Endrizzi, M. G., Macdonald, P., FitzHugh, W., Calvo, S., Engels, R., Smimov, S., Atnoor, D., Brown, A., Allen, N., Naylor, J., Stange-Thomann, N., DeArellano, K., Johnson, R., Linton, L., McEwan, P., McKeman, K., Talamas, J., Tirrell, A., Ye, W., Zimmer, A., Barber, R. D., Cann, I., Graham, D. E., Grahame, D. A., Guss, A. M., Hedderich, R., Ingram-Smith, C., Kuettner, H. C., Krzycki, J. A., Leigh, J. A., Li, W., Liu, J., Mukhopadhyay, B., Reeve, J. N., Smith, K., Springer, T. A., Umayam, L. A., White, O., White, R. H., Conway de Macario, E., Ferry, J. G., Jarrell, K. F., Jing, H., Macario, A. J., Paulsen, I., Pritchett, M., Sowers, K. R., Swanson, R. V., Zinder, S. H., Lander, E., Metcalf, W. W., and Birren, B. (2002). Genome Res. 12, 532-542.
19. Groth, G., and Walker, J. E. (1997). FEBS Lett. 410, 117-123.
20. Grüber, G., Svergun, D. I., Coskun, Ü., Lemker, T., Koch, M. H., Schägger, H., and Müller, V. (2001). Biochemistry 40, 1890-1896.
21. Grüber, G., Wieczorek, H., Harvey, W. R., and Müller, V. (2001). J. Exp. Biol. 204, 2597-2605.
22. Hilario, E., and Gogarten, J. P. (1998). J. Mol. Evol. 46, 703-715.
23. Hirata, R., Graham, L. A., Takatsuki, A., Stevens, T. H., and Anraku, Y. (1997). J. Biol. Chem. 272, 4795-4803.
24. Ihara, K., Watanabe, S., Sugimura, K., and Mukohata, Y. (1997). Arch. Biochem. Biophys. 341, 267-272.
25. Inatomi, K. I., Maeda, M., and Futai, M. (1989). Biochem. Biophys. Res. Commun. 162, 1585-1590.
26. Jones, P. C., Jiang, W., and Fillingame, R. H. (1998). J. Biol. Chem. 273, 17178-17185.
27. Junge, W., Lill, H., and Engelbrecht, S. (1997). Trends Biochem. Sci. 22, 420-423.
28. Kaim, G., and Dimroth, P. (1995). J. Mol. Biol. 253, 726-738.
29. Kaim, G., Matthey, U., and Dimroth, P. (1998). EMBO J. 17, 688-695.
30. Kakinuma, Y., and Igarashi, K. (1995). FEBS Lett. 359, 255-258.
31. Kakinuma, Y., Kakinuma, S., Takase, K., Konishi, K., Igarashi, K., and Yamato, I. (1993). Biochem. Biophys. Res. Commun. 195, 1063-1069.
32. Kawarabayasi, Y., Sawada, M., Horikawa, H., Haikawa, Y., Hino, Y., Yamamoto, S., Sekine, M., Baba, S., Kosugi, H., Hosoyama, A., Nagai, Y., Sakai, M., Ogura, K., Otsuka, R., Nakazawa, H., Takamiya, M., Ohfuku, Y., Funahashi, T., Tanaka, T., Kudoh, Y., Yamazaki, J., Kushida, N., Oguchi, A., Aoki, K., and Kikuchi, H. (1998). DNA Res. 5, 147-155.
33. Kawasaki-Nishi, S., Nishi, T., and Forgac, M. (2001). Proc. Natl. Acad. Sci. U.S.A. 98, 12397-12402.
34. Laubinger, W., and Dimroth, P. (1988). Biochemistry 27, 7531-7537.
35. Lemker, T., Grüber, G., Schmid, R., and Müller, V. (2003). FEBS Lett. 544, 206-209.
36. Lübben, M., Lünsdorf, H., and Schäfer, G. (1988). Biol. Chem. Hoppe Seyler 369, 1259-1266.
37. Lübben, M., and Schäfer, G. (1989). J. Bacteriol. 171, 6106-6116.
38. Mandel, M., Moriyama, Y., Hulmes, J. D., Pan, Y.-C. E., Nelson, H., and Nelson, N. (1988). Proc. Natl. Acad. Sci. U.S.A. 85, 5521-5524.
39. Müller, V., Aufurth, S., and Rahlfs, S. (2001). Biochim. Biophys. Acta 1505, 108-120.
40. Müller, V., Blaut, M., and Gottschalk, G. (1993). In Methanogenesis (Ferry, J. G., ed.), Chapman & Hall, New York, pp. 360-406.
41. Müller, V., and Grüber, G. (2003). Cell. Mol. Life Sci. 60, 474-494.
42. Müller, V., Ruppert, C., and Lemker, T. (1999). J. Bioenerg. Biomembr. 31, 15-28.
43. Murata, T., Arechaga, I., Fearnley, I. M., Kakinuma, Y., Yamato, I., and Walker, J. E. (2003). J. Biol. Chem. 278, 21162-21167.
44. Nelson, N. (1992). Biochim. Biophys. Acta 1100, 109-124.
45. Nelson, N., and Taiz, L. (1989). Trends Biochem. Sci. 14, 113-116.
46. Nishi, T., and Forgac, M. (2002). Nat. Rev. Mol. Cell. Biol. 3, 94-103.
47. Olendzenski, L., Hilario, E., and Gogarten, J. (1998). In Horizontal Gene Transfer (Syvanen, M., and Kado, C. I., eds.) Chapman & Hall, New York, pp. 349-362.
48. Pänke, O., Gumbiowski, K., Junge, W., and Engelbrecht, S. (2000). FEBS Lett. 472, 34-38.
49. Pedersen, P. L., Ko, Y. H., and Hong, S. (2000). J. Bioenerg. Biomembr. 32, 325-332.
50. Rahlfs, S., Aufurth, S., and Müller, V. (1999). J. Biol. Chem. 274, 33999-34004.
51. Rahlfs, S., and Müller, V. (1997). FEBS Lett. 404, 269-271.
52. Reidlinger, J., and Müller, V. (1994). Eur. J. Biochem. 223, 275-283.
53. Robb, F. T., Maeder, D. L., Brown, J. R., DiRuggiero, J., Stump, M. D., Yeh, R. K., Weiss, R. B., and Dunn, D. M. (2001). Methods Enzymol. 330, 134-157.
54. Ruppert, C., Kavermann, H., Wimmers, S., Schmid, R., Kellermann, J., Lottspeich, F., Huber, H., Stetter, K. O., and Müller, V. (1999). J. Biol. Chem. 274, 25281-25284.
55. Ruppert, C., Wimmers, S., Lemker, T., and Müller, V. (1998). J. Bacteriol. 180, 3448-3452.
56. Sambongi, Y., Iko, Y., Tanabe, M., Omote, H., Iwamoto-Kihara, A., Ueda, I., Yanagida, T., Wada, Y., and Futai, M. (1999). Science 286, 1722-1724.
57. Sapra, R., Bagramyan, K., and Adams M. W. W. (2003). Proc. Natl. Acad. Sci. U.S.A. 100, 7545-7550
58. Schäfer, G., Engelhard, M., and Müller, V. (1999). Microbiol. Mol. Biol. Rev. 63, 570-620.
59. Schemidt, R. A., Qu, J., Williams, J. R., and Brusilow, W. S. (1998). J. Bacteriol. 180, 3205-3208.
60. Schnick, C., Forrest, L. R., Sansom, M. S., and Groth, G. (2000). Biochim. Biophys. Acta 1459, 49-60.
61. Seelert, H., Poetsch, A., Dencher, N. A., Engel, A., Stahlberg, H., and Müller, D. J. (2000). Nature 405, 418-419.
62. Senior, A. E., Weber, J., and Alshawi, M. K. (1995). Biochem. Soc. Trans. 23, 747-752.
63. Slesarev, A. I., Mezhevaya, K. V., Makarova, K. S., Polushin, N. N., Shcherbinina, O. V., Shakhova, V. V., Belova, G. I., Aravind, L., Natale, D. A., Rogozin, I. B., Tatusov, R. L., Wolf, Y. I., Stetter, K. O., Malykh, A. G., Koonin, E. V., and Kozyavkin, S. A. (2002). Proc. Natl. Acad. Sci. U.S.A. 99, 4644-4649.
64. Smigan, P., Majernik, A., and Greksak, M. (1994). FEBS Lett. 347, 190-194.
65. Smigan, P., Majernik, A., Polak, P., Hapala, I., and Greksak, M. (1995). FEBS Lett. 371, 119-122.
66. Smigan, P., Rusnak, P., Greksak, M., Zhilina, T. N., and Zavarzin, G. A. (1992). FEBS Lett. 300, 193-196.
67. Smith, D. R., Doucette-Stamm, L. A., Deloughery, C., Lee, H., Dubois, J., Aldredge, T., Bashirzadeh, R., Blakely, D., Cook, R., Gilbert, K., Harrison, D., Hoang, L., Keagle, P., Lumm, W., Pothier, B., Qiu, D., Spadafora, R., Vicaire, R., Wang, Y., Wierzbowski, J., Gibson, R., Jiwani, N., Caruso, A., Bush, D., Safer, H., Patwell, D., Prabhakar, S., McDougall, S., Shimer, G., Goyal, A., Pietrokovski, S., Church, G. M., Daniels, C. J., Mao, J.-I., Rice, P., Nölling, J., and Reeve, J. N. (1997). J. Bacteriol. 179, 7135-7155.
68. Speelmans, G., Poolman, B., Abee, T., and Konings, W. N. (1994). J. Bacteriol. 176, 5160-5162.
69. Stahlberg, H., Müller, D. J., Suda, K., Fotiadis, D., Engel, A., Meier, T., Matthey, U., and Dimroth, P. (2001). EMBO Rep. 2, 229-233.
70. Steinert, K., Wagner, V., Kroth-Pancic, P. G., and Bickel-Sandkö tter, S. (1997). J. Biol. Chem. 272, 6261-6269.
71. Stevens, T. H., and Forgac, M. (1997). Annu. Rev. Cell Dev. Biol. 13, 779-808.
72. Stock, D., Gibbons, C., Arechaga, I., Leslie, A. G., and Walker, J. E. (2000). Curr. Opin. Struct. Biol. 10, 672-679.
73. Stock, D., Leslie, A. G., and Walker, J. E. (1999). Science 286, 1700-1705.
74. Vonck, J., von Nidda, T. K., Meier, T., Matthey, U., Mills, D. J., Kühlbrandt, W., and Dimroth, P. (2002). J. Mol. Biol. 321, 307-316.
75. Wilkens, S., and Forgac, M. (2001). J. Biol. Chem. 276, 44064-44068.
76. Wilms, R., Freiberg, C., Wegerle, E., Meier, I., Mayer, F., and Müller, V. (1996). J. Biol. Chem. 271, 18843-18852.
77. Woese, C. R., Kandler, O., and Wheelis, M. L. (1990). Proc. Natl. Acad. Sci. U.S.A. 87, 4576-4579.
78. Yoshida, M., Muneyuki, E., and Hisabori, T. (2001). Nat. Rev. Mol. Cell Biol. 2, 669-677.
79. Zhang, Y., and Fillingame, R. H. (1995). J. Biol. Chem. 270, 87-93.