On the value of intra-motif dependencies of human insulator protein CTCF

PLoS ONE

Volumn 9, Issue 1, 2014, Pages

  Eggeling, Ralf ^a   Gohr, André ^a   Keilwagen, Jens ^b,c   Mohr, Michaela ^c   Posch, Stefan ^a   Smith, Andrew D ^d   Grosse, Ivo ^a,c,e  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^b INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

^c Department of Genebank Leibniz Institute of Plant Genetics and Crop Plant Research ^*  (Germany)

^d UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^e GERMAN CENTRE FOR INTEGRATIVE BIODIVERSITY RESEARCH IDIV HALLE JENA LEIPZIG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR CTCF; CCCTC-BINDING FACTOR; DNA BINDING PROTEIN; PROTEIN BINDING; REPRESSOR PROTEIN;

AREA UNDER THE CURVE; ARTICLE; BINDING SITE; CLASSIFICATION ALGORITHM; COMPARATIVE STUDY; CONTROLLED STUDY; DNA BINDING MOTIF; DNA SEQUENCE; EMBRYO; HUMAN; HUMAN CELL; MEASUREMENT ACCURACY; PARSIMONIOUS MARKOV MODEL; PROTEIN DNA BINDING; RECEIVER OPERATING CHARACTERISTIC; SENSITIVITY AND SPECIFICITY; STATISTICAL MODEL; VALIDATION STUDY; ALGORITHM; BIOLOGICAL MODEL; CELL CULTURE; CELL LINE; GENETICS; HELA CELL LINE; HEPG2 CELL LINE; K562 CELL LINE; MCF 7 CELL LINE; METABOLISM; NUCLEOTIDE MOTIF; NUCLEOTIDE SEQUENCE; PROBABILITY;

ALGORITHMS; BASE SEQUENCE; BINDING SITES; CELL LINE; CELLS, CULTURED; DNA-BINDING PROTEINS; HELA CELLS; HEP G2 CELLS; HUMANS; K562 CELLS; MARKOV CHAINS; MCF-7 CELLS; MODELS, GENETIC; NUCLEOTIDE MOTIFS; PROTEIN BINDING; REPRESSOR PROTEINS;

EID: 84899874808     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0085629     Document Type: Article

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