-
1
-
-
0031652639
-
Detecling non-adjacent correlations within signals in DNA
-
P Agarwal and V Bafna. Detecling non-adjacent correlations within signals in DNA. In RECOMB'98. 1998.
-
(1998)
RECOMB'98
-
-
Agarwal, P.1
Bafna, V.2
-
2
-
-
0031877016
-
Combining evidence using p-values: Application to sequence homology searches
-
TL Bailey and M Gribskov. Combining evidence using p-values: application to sequence homology searches. Bioinformatics, 14:48-54, 1998.
-
(1998)
Bioinformatics
, vol.14
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
3
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
TL Bailey and C Elkan. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. In ISMB'94. 1994.
-
(1994)
ISMB'94
-
-
Bailey, T.L.1
Elkan, C.2
-
4
-
-
0001360583
-
A simple hyper-geometric approach for discovering putative transcription factor binding sites
-
Y Barash, G Bejerano, and N Friedman. A simple hyper-geometric approach for discovering putative transcription factor binding sites. In WABI'01. 2001.
-
(2001)
WABI'01
-
-
Barash, Y.1
Bejerano, G.2
Friedman, N.3
-
6
-
-
0036100113
-
Context-specific Bayesian clustering for gene expression data
-
Y Barash and N Friedman. Context-specific Bayesian clustering for gene expression data. J. Camp. Bio., 9:169-191, 2002.
-
(2002)
J. Camp. Bio.
, vol.9
, pp. 169-191
-
-
Barash, Y.1
Friedman, N.2
-
8
-
-
0034823882
-
Finding motifs using random projections
-
J Buhler and M Tompa. Finding motifs using random projections. In RECOMB'01. 2001.
-
(2001)
RECOMB'01
-
-
Buhler, J.1
Tompa, M.2
-
9
-
-
0036493201
-
Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors
-
ML Bulyk, PL Johnson, and GM Church. Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors. Nuc. Acids Res., 30:1255-61, 2002.
-
(2002)
Nuc. Acids Res.
, vol.30
, pp. 1255-1261
-
-
Bulyk, M.L.1
Johnson, P.L.2
Church, G.M.3
-
10
-
-
0034136782
-
Modeling splice sites with Bayes networks
-
D Cai. A Deicher, B Kao, and S Kasif. Modeling splice sites with Bayes networks. Bioinformatics, 16:152-158, 2000.
-
(2000)
Bioinformatics
, vol.16
, pp. 152-158
-
-
Cai, D.1
Deicher, A.2
Kao, B.3
Kasif, S.4
-
11
-
-
0031272327
-
Efficient approximations for the marginal likelihood of Bayesian networks with hidden variables
-
DM Chickering and D Heckerman. Efficient approximations for the marginal likelihood of Bayesian networks with hidden variables. Mach. Learn., 29:181-212, 1997.
-
(1997)
Mach. Learn.
, vol.29
, pp. 181-212
-
-
Chickering, D.M.1
Heckerman, D.2
-
12
-
-
84933530882
-
Approximating discrete probability distributions with dependence trees
-
CK Chow and CN Liu. Approximating discrete probability distributions with dependence trees. IEEE Trans. on Info. Theory, 14:462-467, 1968.
-
(1968)
IEEE Trans. on Info. Theory
, vol.14
, pp. 462-467
-
-
Chow, C.K.1
Liu, C.N.2
-
13
-
-
0002629270
-
Maximum likelihood from incomplete data via the EM algorithm
-
AP Dempster, NM Laird, and DB Rubin. Maximum likelihood from incomplete data via the EM algorithm. J. Roy. Stat. Soc, B 39:1-39, 1977.
-
(1977)
J. Roy. Stat. Soc B
, vol.39
, pp. 1-39
-
-
Dempster, A.P.1
Laird, N.M.2
Rubin, D.B.3
-
15
-
-
0001586968
-
Learning belief networks in the presence of missing values and hidden variables
-
N Friedman, Learning belief networks in the presence of missing values and hidden variables. In ICML'97, 1997.
-
(1997)
ICML'97
-
-
Friedman, N.1
-
16
-
-
0000854197
-
The Bayesian structural EM algorithm
-
N Friedman. The Bayesian structural EM algorithm. In UAI'98. 1998.
-
(1998)
UAI'98
-
-
Friedman, N.1
-
19
-
-
0002219642
-
Data analysis with Bayesian networks: A bootstrap approach
-
N Friedman, M Goldszmidt, and A Wyner. Data analysis with Bayesian networks: A bootstrap approach. In UAI'99. 1999.
-
(1999)
UAI'99
-
-
Friedman, N.1
Goldszmidt, M.2
Wyner, A.3
-
20
-
-
0037262841
-
Being Bayesian about Bayesian network structure: A Bayesian approach to structure discovery in Bayesian networks
-
N Friedman and D Koller. Being Bayesian about Bayesian network structure: A Bayesian approach to structure discovery in Bayesian networks. Mach. Learn., 50:95-126, 2003.
-
(2003)
Mach. Learn.
, vol.50
, pp. 95-126
-
-
Friedman, N.1
Koller, D.2
-
23
-
-
34249761849
-
Learning Bayesian networks: The combination of knowledge and statistical data
-
D Heckerman, D Geiger, and DM Chickering. Learning Bayesian networks: The combination of knowledge and statistical data. Mach. Learn., 20:197-243, 1995.
-
(1995)
Mach. Learn.
, vol.20
, pp. 197-243
-
-
Heckerman, D.1
Geiger, D.2
Chickering, D.M.3
-
24
-
-
0032826179
-
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
-
GZ Hertz and GD Stormo. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics. 15:563-77, 1999.
-
(1999)
Bioinformatics
, vol.15
, pp. 563-577
-
-
Hertz, G.Z.1
Stormo, G.D.2
-
25
-
-
0034628901
-
Computational identification of cis-regulatury elements associated with groups of functional related genes in saccharomyces cerevisiae
-
JD Hughes. PE Estep. S Tavazoie. and GM Church. Computational identification of cis-regulatury elements associated with groups of functional related genes in saccharomyces cerevisiae. J. Mol. Bio., 296:1205-1214, 2000.
-
(2000)
J. Mol. Bio.
, vol.296
, pp. 1205-1214
-
-
Hughes, J.D.1
Estep, P.E.2
Tavazoie, S.3
Church, G.M.4
-
26
-
-
0027960477
-
Discovering structural correlations in α-Helices
-
TM Klingler and DL Brutlag. Discovering structural correlations in α-Helices. Prot. Sci., 3:1847-1857, 1994.
-
(1994)
Prot. Sci.
, vol.3
, pp. 1847-1857
-
-
Klingler, T.M.1
Brutlag, D.L.2
-
28
-
-
58149210716
-
The EM algorithm for graphical association models with missing data
-
SL Lauritzen. The EM algorithm for graphical association models with missing data. Camp. Stat. and Data Analysis. 19:191-201, 1995.
-
(1995)
Camp. Stat. and Data Analysis
, vol.19
, pp. 191-201
-
-
Lauritzen, S.L.1
-
29
-
-
0037174671
-
Transcriptional regulatory networks in saccharomyces cerevisiae
-
TI Lee et al. Transcriptional regulatory networks in saccharomyces cerevisiae. Science, 298:799 -804, 2002.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
-
30
-
-
0035949674
-
A computational analysis of sequence features involved in recognition of short introns
-
LP Lim and CB Burge. A computational analysis of sequence features involved in recognition of short introns. PNAS. 98:11193-11198, 2001.
-
(2001)
PNAS
, vol.98
, pp. 11193-11198
-
-
Lim, L.P.1
Burge, C.B.2
-
31
-
-
0035228215
-
Bioprospector: Discovering conserved dna motifs in upstream regulatory regions of co-expressed genes
-
X Liu, DL Brutlag, and JS Liu. Bioprospector: discovering conserved dna motifs in upstream regulatory regions of co-expressed genes. In PSB'01. 2001.
-
(2001)
PSB'01
-
-
Liu, X.1
Brutlag, D.L.2
Liu, J.S.3
-
32
-
-
84898959728
-
Estimating dependency structure as a hidden variable
-
M Meila and MI Jordan. Estimating dependency structure as a hidden variable. In NIPS 10, 1998.
-
(1998)
NIPS
, vol.10
-
-
Meila, M.1
Jordan, M.I.2
-
34
-
-
0028971143
-
MatInd and MatInspector - New fast and versatile tools for detection of consensus matches in nucleotide sequence data
-
K Quandt. K Frech, H Karas, E Wingender, and T Werner. MatInd and MatInspector - new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nuc. Acids Res., 23:4878-4884, 1995.
-
(1995)
Nuc. Acids Res.
, vol.23
, pp. 4878-4884
-
-
Quandt, K.1
Frech, K.2
Karas, H.3
Wingender, E.4
Werner, T.5
-
35
-
-
0034704248
-
Genome-wide location and function of dna binding proteins
-
B Ren et al. Genome-wide location and function of dna binding proteins. Science, 290:2306-9, 2000.
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
-
36
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
FP Roth, PW Hughes, JD Estep, and GM Church. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat. Biotech., 16:939-945, 1998.
-
(1998)
Nat. Biotech.
, vol.16
, pp. 939-945
-
-
Roth, F.P.1
Hughes, P.W.2
Estep, J.D.3
Church, G.M.4
-
38
-
-
17944372930
-
Serial regulation of transcriptional regulators in the yeast cell cycle
-
I Simon et al. Serial regulation of transcriptional regulators in the yeast cell cycle. Cell. 106:697-708, 2001.
-
(2001)
Cell
, vol.106
, pp. 697-708
-
-
Simon, I.1
-
39
-
-
0033028596
-
Systematic determination of genetic network architecture
-
S Tavazoie, JD Hughes, MJ Campbell. RJ Cho, and GM Church. Systematic determination of genetic network architecture. Nat. Genet., 22:281-5, 1999.
-
(1999)
Nat. Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
40
-
-
0034566082
-
Mining for putative regulatory elements in the yeast genome using gene expression data
-
J Vilo. A Brazma, I Jonassen, A Robinson, and E Ukkonen. Mining for putative regulatory elements in the yeast genome using gene expression data. In ISMB'00. 2000.
-
(2000)
ISMB'00
-
-
Vilo, J.1
Brazma, A.2
Jonassen, I.3
Robinson, A.4
Ukkonen, E.5
-
41
-
-
0035172256
-
The TRANSFAC system on gene expression regulation
-
E Wingender it et al. The TRANSFAC system on gene expression regulation. Nuc. Acids Res., 29:281-283, 2001.
-
(2001)
Nuc. Acids Res.
, vol.29
, pp. 281-283
-
-
Wingender, E.1
|