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Volumn 388, Issue 1, 2009, Pages 48-70

The Genome of Bacillus subtilis Bacteriophage SPO1

Author keywords

Bacillus subtilis phage; bacteriophage genomics; comparative genomics; phage SPO1; SPO1 genome

Indexed keywords

TRANSCRIPTION FACTOR; TRANSFER RNA;

EID: 63449110899     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2009.03.009     Document Type: Article
Times cited : (109)

References (131)
  • 1
    • 0026671486 scopus 로고
    • Replication cycle of Bacillus subtilis hydroxymethyluracil-containing phages
    • Hoet P.P., Coene M.M., and Cocito C.G. Replication cycle of Bacillus subtilis hydroxymethyluracil-containing phages. Annu. Rev. Microbiol. 46 (1992) 95-116
    • (1992) Annu. Rev. Microbiol. , vol.46 , pp. 95-116
    • Hoet, P.P.1    Coene, M.M.2    Cocito, C.G.3
  • 2
    • 0342987899 scopus 로고
    • SPO1 and related bacteriophages
    • Sonenshein A.L., Joch J.A., and Losick R. (Eds), American Society of Microbiology, Washington, DC
    • Stewart C.R. SPO1 and related bacteriophages. In: Sonenshein A.L., Joch J.A., and Losick R. (Eds). Bacillus subtilis and Other Gram-Positive Bacteria (1993), American Society of Microbiology, Washington, DC 813-827
    • (1993) Bacillus subtilis and Other Gram-Positive Bacteria , pp. 813-827
    • Stewart, C.R.1
  • 3
    • 0010500258 scopus 로고
    • The possible role of recombination in the infection of competent Bacillus subtilis by bacteriophage deoxyribonucleic acid
    • Okubo S., Strauss B., and Stodolsky M. The possible role of recombination in the infection of competent Bacillus subtilis by bacteriophage deoxyribonucleic acid. Virology 24 (1964) 552-562
    • (1964) Virology , vol.24 , pp. 552-562
    • Okubo, S.1    Strauss, B.2    Stodolsky, M.3
  • 4
    • 0028124527 scopus 로고
    • The DNA polymerase genes of several HMU-bacteriophages have similar group I introns with highly divergent open reading frames
    • Goodrich-Blair H., and Shub D.A. The DNA polymerase genes of several HMU-bacteriophages have similar group I introns with highly divergent open reading frames. Nucleic Acids Res. 22 (1994) 3715-3721
    • (1994) Nucleic Acids Res. , vol.22 , pp. 3715-3721
    • Goodrich-Blair, H.1    Shub, D.A.2
  • 5
    • 0018166159 scopus 로고
    • Bacillus subtilis bacteriophages SP82, SPO1, and φ{symbol}e: a comparison of DNAs and of peptides synthesized during infection
    • Lawrie J.M., Downard J.S., and Whiteley H.R. Bacillus subtilis bacteriophages SP82, SPO1, and φ{symbol}e: a comparison of DNAs and of peptides synthesized during infection. J. Virol. 27 (1978) 725-737
    • (1978) J. Virol. , vol.27 , pp. 725-737
    • Lawrie, J.M.1    Downard, J.S.2    Whiteley, H.R.3
  • 6
    • 0015243118 scopus 로고
    • Transcription during bacteriophage SPO1 development: mutations affecting the program of viral transcription
    • Fujita D.J., Ohlsson-Wilhelm B.M., and Geiduschek E.P. Transcription during bacteriophage SPO1 development: mutations affecting the program of viral transcription. J. Mol. Biol. 57 (1971) 301-317
    • (1971) J. Mol. Biol. , vol.57 , pp. 301-317
    • Fujita, D.J.1    Ohlsson-Wilhelm, B.M.2    Geiduschek, E.P.3
  • 7
    • 0015243137 scopus 로고
    • RNA synthesis during bacteriophage SPO1 development: six classes of SPO1 RNA
    • Gage L.P., and Geiduschek E.P. RNA synthesis during bacteriophage SPO1 development: six classes of SPO1 RNA. J. Mol. Biol. 57 (1971) 279-297
    • (1971) J. Mol. Biol. , vol.57 , pp. 279-297
    • Gage, L.P.1    Geiduschek, E.P.2
  • 8
    • 0019442506 scopus 로고
    • Cascades of Sigma factors
    • Losick R., and Pero J. Cascades of Sigma factors. Cell 25 (1981) 582-584
    • (1981) Cell , vol.25 , pp. 582-584
    • Losick, R.1    Pero, J.2
  • 9
    • 0019814933 scopus 로고
    • Conserved nucleotide sequences in temporally controlled bacteriophage promoters
    • Lee G., and Pero J. Conserved nucleotide sequences in temporally controlled bacteriophage promoters. J. Mol. Biol. 152 (1981) 247-265
    • (1981) J. Mol. Biol. , vol.152 , pp. 247-265
    • Lee, G.1    Pero, J.2
  • 10
    • 0025144820 scopus 로고
    • A self-splicing group I intron in the DNA polymerase gene of Bacillus subtilis bacteriophage SPO1
    • Goodrich-Blair H., Scarlato V., Gott J.M., Xu M.Q., and Shub D.A. A self-splicing group I intron in the DNA polymerase gene of Bacillus subtilis bacteriophage SPO1. Cell 63 (1990) 417-424
    • (1990) Cell , vol.63 , pp. 417-424
    • Goodrich-Blair, H.1    Scarlato, V.2    Gott, J.M.3    Xu, M.Q.4    Shub, D.A.5
  • 11
    • 3042606642 scopus 로고    scopus 로고
    • Group I intron homing in Bacillus phages SPO1 and SP82: a gene conversion event initiated by a nicking homing endonuclease
    • Landthaler M., Lau N.C., and Shub D.A. Group I intron homing in Bacillus phages SPO1 and SP82: a gene conversion event initiated by a nicking homing endonuclease. J. Bacteriol. 186 (2004) 4307-4314
    • (2004) J. Bacteriol. , vol.186 , pp. 4307-4314
    • Landthaler, M.1    Lau, N.C.2    Shub, D.A.3
  • 12
    • 0017851842 scopus 로고
    • Terminal redundancy of "high frequency of recombination" markers of Bacillus subtilis phage SPO1
    • Cregg J.M., and Stewart C.R. Terminal redundancy of "high frequency of recombination" markers of Bacillus subtilis phage SPO1. Virology 86 (1978) 530-541
    • (1978) Virology , vol.86 , pp. 530-541
    • Cregg, J.M.1    Stewart, C.R.2
  • 13
    • 0032486599 scopus 로고    scopus 로고
    • Genes and regulatory sites of the "host-takeover module" in the terminal redundancy of Bacillus subtilis bacteriophage SPO1
    • Stewart C.R., Gaslightwala I., Hinata K., Krolikowski K.A., Needleman D.S., Peng A.S., et al. Genes and regulatory sites of the "host-takeover module" in the terminal redundancy of Bacillus subtilis bacteriophage SPO1. Virology 246 (1998) 329-340
    • (1998) Virology , vol.246 , pp. 329-340
    • Stewart, C.R.1    Gaslightwala, I.2    Hinata, K.3    Krolikowski, K.A.4    Needleman, D.S.5    Peng, A.S.6
  • 14
    • 0018427748 scopus 로고
    • Restriction cleavage map of SPO1 DNA: general location of early, middle, and late genes
    • Pero J., Hannett N.M., and Talkington C. Restriction cleavage map of SPO1 DNA: general location of early, middle, and late genes. J. Virol. 31 (1979) 156-171
    • (1979) J. Virol. , vol.31 , pp. 156-171
    • Pero, J.1    Hannett, N.M.2    Talkington, C.3
  • 15
    • 0025675964 scopus 로고
    • TF1, a bacteriophage-specific DNA-binding and DNA-bending protein
    • Geiduschek E.P., Schneider G.J., and Sayre M.H. TF1, a bacteriophage-specific DNA-binding and DNA-bending protein. J. Struct. Biol. 104 (1990) 84-90
    • (1990) J. Struct. Biol. , vol.104 , pp. 84-90
    • Geiduschek, E.P.1    Schneider, G.J.2    Sayre, M.H.3
  • 16
    • 0020684299 scopus 로고
    • Bacteriophage SPO1 structure and morphogenesis: III. SPO1 proteins and synthesis
    • Parker M.L., and Eiserling F.A. Bacteriophage SPO1 structure and morphogenesis: III. SPO1 proteins and synthesis. J. Virol. 46 (1983) 260-269
    • (1983) J. Virol. , vol.46 , pp. 260-269
    • Parker, M.L.1    Eiserling, F.A.2
  • 17
    • 0020672476 scopus 로고
    • Bacteriophage SPO1 structure and morphogenesis: II. Head structure and DNA size
    • Parker M.L., Ralston E.J., and Eiserling F.A. Bacteriophage SPO1 structure and morphogenesis: II. Head structure and DNA size. J. Virol. 46 (1983) 250-259
    • (1983) J. Virol. , vol.46 , pp. 250-259
    • Parker, M.L.1    Ralston, E.J.2    Eiserling, F.A.3
  • 18
    • 0020672475 scopus 로고
    • Bacteriophage SPO1 structure and morphogenesis: I. Tail structure and length regulation
    • Parker M.L., and Eiserling F.A. Bacteriophage SPO1 structure and morphogenesis: I. Tail structure and length regulation. J. Virol. 46 (1983) 239-249
    • (1983) J. Virol. , vol.46 , pp. 239-249
    • Parker, M.L.1    Eiserling, F.A.2
  • 19
    • 0020517289 scopus 로고
    • Bacteriophage SPO1 gene 27: location and nucleotide sequence
    • Costanzo M., Hannett N., Brzustowicz L., and Pero J. Bacteriophage SPO1 gene 27: location and nucleotide sequence. J. Virol. 48 (1983) 555-560
    • (1983) J. Virol. , vol.48 , pp. 555-560
    • Costanzo, M.1    Hannett, N.2    Brzustowicz, L.3    Pero, J.4
  • 20
    • 0020729997 scopus 로고
    • Structure of a Bacillus subtilis bacteriophage SPO1 gene encoding RNA polymerase sigma factor
    • Costanzo M., and Pero J. Structure of a Bacillus subtilis bacteriophage SPO1 gene encoding RNA polymerase sigma factor. Proc. Natl Acad. Sci. USA 80 (1983) 1236-1240
    • (1983) Proc. Natl Acad. Sci. USA , vol.80 , pp. 1236-1240
    • Costanzo, M.1    Pero, J.2
  • 21
    • 0021692425 scopus 로고
    • Bacteriophage SPO1 genes 33 and 34. Location and primary structure of genes encoding regulatory subunits of Bacillus subtilis RNA polymerase
    • Costanzo M., Brzustowicz L., Hannett N., and Pero J. Bacteriophage SPO1 genes 33 and 34. Location and primary structure of genes encoding regulatory subunits of Bacillus subtilis RNA polymerase. J. Mol. Biol. 180 (1984) 533-547
    • (1984) J. Mol. Biol. , vol.180 , pp. 533-547
    • Costanzo, M.1    Brzustowicz, L.2    Hannett, N.3    Pero, J.4
  • 23
  • 24
    • 0026782560 scopus 로고
    • The DNA polymerase-encoding gene of Bacillus subtilis bacteriophage SPO1
    • Scarlato V., and Gargano S. The DNA polymerase-encoding gene of Bacillus subtilis bacteriophage SPO1. Gene 118 (1992) 109-113
    • (1992) Gene , vol.118 , pp. 109-113
    • Scarlato, V.1    Gargano, S.2
  • 25
    • 0026598128 scopus 로고
    • Sequence of the bacteriophage SPO1 gene 30
    • Scarlato V., and Sayre M.H. Sequence of the bacteriophage SPO1 gene 30. Gene 114 (1992) 115-119
    • (1992) Gene , vol.114 , pp. 115-119
    • Scarlato, V.1    Sayre, M.H.2
  • 26
    • 0018636122 scopus 로고
    • Distinctive nucleotide sequences of promoters recognized by RNA polymerase containing a phage-coded "sigma-like" protein
    • Talkington C., and Pero J. Distinctive nucleotide sequences of promoters recognized by RNA polymerase containing a phage-coded "sigma-like" protein. Proc. Natl Acad. Sci. USA 76 (1979) 5465-5469
    • (1979) Proc. Natl Acad. Sci. USA , vol.76 , pp. 5465-5469
    • Talkington, C.1    Pero, J.2
  • 27
    • 0027131809 scopus 로고
    • A cytotoxic early gene of Bacillus subtilis bacteriophage SPO1
    • Wei P., and Stewart C.R. A cytotoxic early gene of Bacillus subtilis bacteriophage SPO1. J. Bacteriol. 175 (1993) 7887-7900
    • (1993) J. Bacteriol. , vol.175 , pp. 7887-7900
    • Wei, P.1    Stewart, C.R.2
  • 28
    • 0026654257 scopus 로고
    • Deoxyuridylate-hydroxymethylase of bacteriophage SPO1
    • Wilhelm K., and Ruger W. Deoxyuridylate-hydroxymethylase of bacteriophage SPO1. Virology 189 (1992) 640-646
    • (1992) Virology , vol.189 , pp. 640-646
    • Wilhelm, K.1    Ruger, W.2
  • 31
    • 0017350262 scopus 로고
    • Selective screening procedure for the isolation of heat- and cold-sensitive, DNA replication-deficient mutants of bacteriophage SPO1 and preliminary characterization of the mutants isolated
    • Glassberg J., Slomiany R.A., and Stewart C.R. Selective screening procedure for the isolation of heat- and cold-sensitive, DNA replication-deficient mutants of bacteriophage SPO1 and preliminary characterization of the mutants isolated. J. Virol. 21 (1977) 54-60
    • (1977) J. Virol. , vol.21 , pp. 54-60
    • Glassberg, J.1    Slomiany, R.A.2    Stewart, C.R.3
  • 32
    • 1542286922 scopus 로고    scopus 로고
    • Roles of genes 44, 50, and 51 in regulating gene expression and host takeover during infection of Bacillus subtilis by bacteriophage SPO1
    • Sampath A., and Stewart C.R. Roles of genes 44, 50, and 51 in regulating gene expression and host takeover during infection of Bacillus subtilis by bacteriophage SPO1. J. Bacteriol. 186 (2004) 1785-1792
    • (2004) J. Bacteriol. , vol.186 , pp. 1785-1792
    • Sampath, A.1    Stewart, C.R.2
  • 33
    • 0023820681 scopus 로고
    • TF1, the bacteriophage SPO1-encoded type II DNA-binding protein, is essential for viral multiplication
    • Sayre M.H., and Geiduschek E.P. TF1, the bacteriophage SPO1-encoded type II DNA-binding protein, is essential for viral multiplication. J. Virol. 62 (1988) 3455-3462
    • (1988) J. Virol. , vol.62 , pp. 3455-3462
    • Sayre, M.H.1    Geiduschek, E.P.2
  • 34
    • 17044437752 scopus 로고    scopus 로고
    • The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages
    • Kwan T., Liu J., DuBow M., Gros P., and Pelletier J. The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages. Proc. Natl Acad. Sci. USA 102 (2005) 5174-5179
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 5174-5179
    • Kwan, T.1    Liu, J.2    DuBow, M.3    Gros, P.4    Pelletier, J.5
  • 35
    • 1942443183 scopus 로고    scopus 로고
    • Genome of staphylococcal phage K: a new lineage of Myoviridae infecting Gram-positive bacteria with a low G+C content
    • O'Flaherty S., Coffey A., Edwards R., Meaney W., Fitzgerald G.F., and Ross R.P. Genome of staphylococcal phage K: a new lineage of Myoviridae infecting Gram-positive bacteria with a low G+C content. J. Bacteriol. 186 (2004) 2862-2871
    • (2004) J. Bacteriol. , vol.186 , pp. 2862-2871
    • O'Flaherty, S.1    Coffey, A.2    Edwards, R.3    Meaney, W.4    Fitzgerald, G.F.5    Ross, R.P.6
  • 36
    • 0028309650 scopus 로고
    • Self-splicing group I and group II introns encode homologous (putative) DNA endonucleases of a new family
    • Gorbalenya A.E. Self-splicing group I and group II introns encode homologous (putative) DNA endonucleases of a new family. Protein Sci. 3 (1994) 1117-1120
    • (1994) Protein Sci. , vol.3 , pp. 1117-1120
    • Gorbalenya, A.E.1
  • 37
    • 34047123641 scopus 로고    scopus 로고
    • The conserved asparagine in the HNH motif serves an important structural role in metal finger endonucleases
    • Huang H., and Yuan H.S. The conserved asparagine in the HNH motif serves an important structural role in metal finger endonucleases. J. Mol. Biol. 368 (2007) 812-821
    • (2007) J. Mol. Biol. , vol.368 , pp. 812-821
    • Huang, H.1    Yuan, H.S.2
  • 38
    • 0028151655 scopus 로고
    • Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns
    • Shub D.A., Goodrich-Blair H., and Eddy S.R. Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns. Trends Biochem. Sci. 19 (1994) 402-404
    • (1994) Trends Biochem. Sci. , vol.19 , pp. 402-404
    • Shub, D.A.1    Goodrich-Blair, H.2    Eddy, S.R.3
  • 39
    • 0036567507 scopus 로고    scopus 로고
    • Two self-splicing group I introns in the ribonucleotide reductase large subunit gene of Staphylococcus aureus phage Twort
    • Landthaler M., Begley U., Lau N.C., and Shub D.A. Two self-splicing group I introns in the ribonucleotide reductase large subunit gene of Staphylococcus aureus phage Twort. Nucleic Acids Res. 30 (2002) 1935-1943
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1935-1943
    • Landthaler, M.1    Begley, U.2    Lau, N.C.3    Shub, D.A.4
  • 40
    • 0033536050 scopus 로고    scopus 로고
    • Unexpected abundance of self-splicing introns in the genome of bacteriophage Twort: introns in multiple genes, a single gene with three introns, and exon skipping by group I ribozymes
    • Landthaler M., and Shub D.A. Unexpected abundance of self-splicing introns in the genome of bacteriophage Twort: introns in multiple genes, a single gene with three introns, and exon skipping by group I ribozymes. Proc. Natl Acad. Sci. USA 96 (1999) 7005-7010
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 7005-7010
    • Landthaler, M.1    Shub, D.A.2
  • 41
    • 27744503831 scopus 로고    scopus 로고
    • Bacteriophage P100 for control of Listeria monocytogenes in foods: genome sequence, bioinformatic analyses, oral toxicity study, and application
    • Carlton R.M., Noordman W.H., Biswas B., de Meester E.D., and Loessner M.J. Bacteriophage P100 for control of Listeria monocytogenes in foods: genome sequence, bioinformatic analyses, oral toxicity study, and application. Regul. Toxicol. Pharmacol. 43 (2005) 301-312
    • (2005) Regul. Toxicol. Pharmacol. , vol.43 , pp. 301-312
    • Carlton, R.M.1    Noordman, W.H.2    Biswas, B.3    de Meester, E.D.4    Loessner, M.J.5
  • 42
    • 6044223543 scopus 로고    scopus 로고
    • Lactobacillus plantarum bacteriophage LP65: a new member of the SPO1-like genus of the family Myoviridae
    • Chibani-Chennoufi S., Dillmann M.L., Marvin-Guy L., Rami-Shojaei S., and Brussow H. Lactobacillus plantarum bacteriophage LP65: a new member of the SPO1-like genus of the family Myoviridae. J. Bacteriol. 186 (2004) 7069-7083
    • (2004) J. Bacteriol. , vol.186 , pp. 7069-7083
    • Chibani-Chennoufi, S.1    Dillmann, M.L.2    Marvin-Guy, L.3    Rami-Shojaei, S.4    Brussow, H.5
  • 43
    • 22544441328 scopus 로고    scopus 로고
    • Comparative genomics and evolution of the tailed-bacteriophages
    • Casjens S.R. Comparative genomics and evolution of the tailed-bacteriophages. Curr. Opin. Microbiol. 8 (2005) 451-458
    • (2005) Curr. Opin. Microbiol. , vol.8 , pp. 451-458
    • Casjens, S.R.1
  • 45
    • 0037453721 scopus 로고    scopus 로고
    • Global phage diversity
    • Rohwer F. Global phage diversity. Cell 113 (2003) 141
    • (2003) Cell , vol.113 , pp. 141
    • Rohwer, F.1
  • 46
    • 30044450426 scopus 로고    scopus 로고
    • Shared architecture of bacteriophage SPO1 and herpesvirus capsids
    • Duda R.L., Hendrix R.W., Huang W.M., and Conway J.F. Shared architecture of bacteriophage SPO1 and herpesvirus capsids. Curr. Biol. 16 (2006) R11-R13
    • (2006) Curr. Biol. , vol.16
    • Duda, R.L.1    Hendrix, R.W.2    Huang, W.M.3    Conway, J.F.4
  • 47
    • 0017118828 scopus 로고
    • Assembly of the head of bacteriophage P22, X-ray diffraction from heads, proheads and related structures
    • Earnshaw W., Casjens S., and Harrison S. Assembly of the head of bacteriophage P22, X-ray diffraction from heads, proheads and related structures. J. Mol. Biol. 104 (1976) 387-410
    • (1976) J. Mol. Biol. , vol.104 , pp. 387-410
    • Earnshaw, W.1    Casjens, S.2    Harrison, S.3
  • 48
    • 0028821725 scopus 로고
    • Organization and transcriptional analysis of the Listeria phage A511 late gene region comprising the major capsid and tail sheath protein genes cps and tsh
    • Loessner M.J., and Scherer S. Organization and transcriptional analysis of the Listeria phage A511 late gene region comprising the major capsid and tail sheath protein genes cps and tsh. J. Bacteriol. 177 (1995) 6601-6609
    • (1995) J. Bacteriol. , vol.177 , pp. 6601-6609
    • Loessner, M.J.1    Scherer, S.2
  • 49
    • 20444434362 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the LE1 prophage from the spirochete Leptospira biflexa and characterization of its replication and partition functions
    • Bourhy P., Frangeul L., Couve E., Glaser P., Saint Girons I., and Picardeau M. Complete nucleotide sequence of the LE1 prophage from the spirochete Leptospira biflexa and characterization of its replication and partition functions. J. Bacteriol. 187 (2005) 3931-3940
    • (2005) J. Bacteriol. , vol.187 , pp. 3931-3940
    • Bourhy, P.1    Frangeul, L.2    Couve, E.3    Glaser, P.4    Saint Girons, I.5    Picardeau, M.6
  • 50
    • 0002107186 scopus 로고
    • Control mechanisms in dsDNA bacteriophage assembly
    • Calendar R. (Ed), Plenum Press, New York, NY
    • Casjens S., and Hendrix R. Control mechanisms in dsDNA bacteriophage assembly. In: Calendar R. (Ed). The Bacteriophages vol. 1 (1988), Plenum Press, New York, NY 15-91
    • (1988) The Bacteriophages , vol.1 , pp. 15-91
    • Casjens, S.1    Hendrix, R.2
  • 51
    • 3042563761 scopus 로고    scopus 로고
    • Displacements of prohead protease genes in the late operons of double-stranded-DNA bacteriophages
    • Liu J., and Mushegian A. Displacements of prohead protease genes in the late operons of double-stranded-DNA bacteriophages. J. Bacteriol. 186 (2004) 4369-4375
    • (2004) J. Bacteriol. , vol.186 , pp. 4369-4375
    • Liu, J.1    Mushegian, A.2
  • 52
    • 0025679387 scopus 로고
    • First isolation of bacteriophages for a spirochaete: potential genetic tools for Leptospira
    • Saint Girons I., Margarita D., Amouriaux P., and Baranton G. First isolation of bacteriophages for a spirochaete: potential genetic tools for Leptospira. Res. Microbiol. 141 (1990) 1131-1138
    • (1990) Res. Microbiol. , vol.141 , pp. 1131-1138
    • Saint Girons, I.1    Margarita, D.2    Amouriaux, P.3    Baranton, G.4
  • 53
    • 73649156890 scopus 로고
    • Physical principles in the construction of regular viruses
    • Caspar D., and Klug A. Physical principles in the construction of regular viruses. Cold Spr. Harb. Symp. Quant. Biol. 27 (1962) 1-27
    • (1962) Cold Spr. Harb. Symp. Quant. Biol. , vol.27 , pp. 1-27
    • Caspar, D.1    Klug, A.2
  • 54
    • 18844400837 scopus 로고    scopus 로고
    • Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry
    • Fokine A., Leiman P.G., Shneider M.M., Ahvazi B., Boeshans K.M., Steven A.C., et al. Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry. Proc. Natl Acad. Sci. USA 102 (2005) 7163-7168
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 7163-7168
    • Fokine, A.1    Leiman, P.G.2    Shneider, M.M.3    Ahvazi, B.4    Boeshans, K.M.5    Steven, A.C.6
  • 56
    • 39849102970 scopus 로고    scopus 로고
    • Backbone structure of the infectious e{open}15 virus capsid revealed by electron cryomicroscopy
    • Jiang W., Baker M.L., Jakana J., Weigele P.R., King J., and Chiu W. Backbone structure of the infectious e{open}15 virus capsid revealed by electron cryomicroscopy. Nature 451 (2008) 1130-1134
    • (2008) Nature , vol.451 , pp. 1130-1134
    • Jiang, W.1    Baker, M.L.2    Jakana, J.3    Weigele, P.R.4    King, J.5    Chiu, W.6
  • 57
    • 17044395121 scopus 로고    scopus 로고
    • Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of φ{symbol}29
    • Morais M.C., Choi K.H., Koti J.S., Chipman P.R., Anderson D.L., and Rossmann M.G. Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of φ{symbol}29. Mol. Cell 18 (2005) 149-159
    • (2005) Mol. Cell , vol.18 , pp. 149-159
    • Morais, M.C.1    Choi, K.H.2    Koti, J.S.3    Chipman, P.R.4    Anderson, D.L.5    Rossmann, M.G.6
  • 58
    • 34250170456 scopus 로고    scopus 로고
    • Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus
    • Weigele P.R., Pope W.H., Pedulla M.L., Houtz J.M., Smith A.L., Conway J.F., et al. Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus. Environ. Microbiol. 9 (2007) 1675-1695
    • (2007) Environ. Microbiol. , vol.9 , pp. 1675-1695
    • Weigele, P.R.1    Pope, W.H.2    Pedulla, M.L.3    Houtz, J.M.4    Smith, A.L.5    Conway, J.F.6
  • 59
    • 0036299014 scopus 로고    scopus 로고
    • Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus
    • Morgan G., Hatfull G., Casjens S., and Hendrix R. Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 317 (2002) 337-359
    • (2002) J. Mol. Biol. , vol.317 , pp. 337-359
    • Morgan, G.1    Hatfull, G.2    Casjens, S.3    Hendrix, R.4
  • 60
    • 0034715545 scopus 로고    scopus 로고
    • Mutational analysis of two structural genes of the temperate lactococcal bacteriophage TP901-1 involved in tail length determination and baseplate assembly
    • Pedersen M., Ostergaard S., Bresciani J., and Vogensen F.K. Mutational analysis of two structural genes of the temperate lactococcal bacteriophage TP901-1 involved in tail length determination and baseplate assembly. Virology 276 (2000) 315-328
    • (2000) Virology , vol.276 , pp. 315-328
    • Pedersen, M.1    Ostergaard, S.2    Bresciani, J.3    Vogensen, F.K.4
  • 61
    • 0019550735 scopus 로고
    • The morphology of staphylococcal bacteriophage K and DNA metabolism in infected Staphylococcus aureus
    • Rees P.J., and Fry B.A. The morphology of staphylococcal bacteriophage K and DNA metabolism in infected Staphylococcus aureus. J. Gen. Virol. 53 (1981) 293-307
    • (1981) J. Gen. Virol. , vol.53 , pp. 293-307
    • Rees, P.J.1    Fry, B.A.2
  • 62
    • 50249163139 scopus 로고    scopus 로고
    • The terminally redundant, nonpermuted genome of Listeria bacteriophage A511: a model for the SPO1-like myoviruses of Gram-positive bacteria
    • Klumpp J., Dorscht J., Lurz R., Bielmann R., Wieland M., Zimmer M., et al. The terminally redundant, nonpermuted genome of Listeria bacteriophage A511: a model for the SPO1-like myoviruses of Gram-positive bacteria. J. Bacteriol. 190 (2008) 5753-5765
    • (2008) J. Bacteriol. , vol.190 , pp. 5753-5765
    • Klumpp, J.1    Dorscht, J.2    Lurz, R.3    Bielmann, R.4    Wieland, M.5    Zimmer, M.6
  • 63
    • 0021712727 scopus 로고
    • Length determination in bacteriophage lambda tails
    • Katsura I., and Hendrix R.W. Length determination in bacteriophage lambda tails. Cell 39 (1984) 691-698
    • (1984) Cell , vol.39 , pp. 691-698
    • Katsura, I.1    Hendrix, R.W.2
  • 64
    • 0023647163 scopus 로고
    • Determination of bacteriophage lambda tail length by a protein ruler
    • Katsura I. Determination of bacteriophage lambda tail length by a protein ruler. Nature 327 (1987) 73-75
    • (1987) Nature , vol.327 , pp. 73-75
    • Katsura, I.1
  • 66
    • 0027370076 scopus 로고
    • A programmed translational frameshift is required for the synthesis of a bacteriophage λ tail assembly protein
    • Levin M.E., Hendrix R.W., and Casjens S.R. A programmed translational frameshift is required for the synthesis of a bacteriophage λ tail assembly protein. J. Mol. Biol. 234 (1993) 124-139
    • (1993) J. Mol. Biol. , vol.234 , pp. 124-139
    • Levin, M.E.1    Hendrix, R.W.2    Casjens, S.R.3
  • 67
    • 4944237752 scopus 로고    scopus 로고
    • Conserved translational frameshift in dsDNA bacteriophage tail assembly genes
    • Xu J., Hendrix R.W., and Duda R.L. Conserved translational frameshift in dsDNA bacteriophage tail assembly genes. Mol. Cell 16 (2004) 11-21
    • (2004) Mol. Cell , vol.16 , pp. 11-21
    • Xu, J.1    Hendrix, R.W.2    Duda, R.L.3
  • 69
    • 1442300823 scopus 로고    scopus 로고
    • Peptidoglycan hydrolytic activities associated with bacteriophage virions
    • Moak M., and Molineux I.J. Peptidoglycan hydrolytic activities associated with bacteriophage virions. Mol. Microbiol. 51 (2004) 1169-1183
    • (2004) Mol. Microbiol. , vol.51 , pp. 1169-1183
    • Moak, M.1    Molineux, I.J.2
  • 70
    • 0038154169 scopus 로고    scopus 로고
    • Homotrimeric, β-stranded viral adhesins and tail proteins
    • Weigele P.R., Scanlon E., and King J. Homotrimeric, β-stranded viral adhesins and tail proteins. J. Bacteriol. 185 (2003) 4022-4030
    • (2003) J. Bacteriol. , vol.185 , pp. 4022-4030
    • Weigele, P.R.1    Scanlon, E.2    King, J.3
  • 71
    • 0035910068 scopus 로고    scopus 로고
    • BETAWRAP: successful prediction of parallel β-helices from primary sequence reveals an association with many microbial pathogens
    • Bradley P., Cowen L., Menke M., King J., and Berger B. BETAWRAP: successful prediction of parallel β-helices from primary sequence reveals an association with many microbial pathogens. Proc. Natl Acad. Sci. USA 98 (2001) 14819-14824
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 14819-14824
    • Bradley, P.1    Cowen, L.2    Menke, M.3    King, J.4    Berger, B.5
  • 72
    • 0017804482 scopus 로고
    • EcoRI cleavage of DNA from Bacillus subtilis phage SPO1
    • Cregg J.M., and Stewart C.R. EcoRI cleavage of DNA from Bacillus subtilis phage SPO1. Virology 85 (1978) 601-605
    • (1978) Virology , vol.85 , pp. 601-605
    • Cregg, J.M.1    Stewart, C.R.2
  • 73
    • 0015335523 scopus 로고
    • Replication of viral DNA in SPO1-infected Bacillus subtilis: I. Replicative intermediates
    • Levner M.H., and Cozzarelli N.R. Replication of viral DNA in SPO1-infected Bacillus subtilis: I. Replicative intermediates. Virology 48 (1972) 402-416
    • (1972) Virology , vol.48 , pp. 402-416
    • Levner, M.H.1    Cozzarelli, N.R.2
  • 75
    • 62449181292 scopus 로고    scopus 로고
    • Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions
    • Clokie M., and Kropinski A. (Eds), Humana Press, Totowa, NJ
    • Casjens S., and Gilcrease D. Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions. In: Clokie M., and Kropinski A. (Eds). Bacteriophages: Methods and Protocols vol. 502 (2008), Humana Press, Totowa, NJ 91-111
    • (2008) Bacteriophages: Methods and Protocols , vol.502 , pp. 91-111
    • Casjens, S.1    Gilcrease, D.2
  • 76
    • 19944434101 scopus 로고    scopus 로고
    • The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy
    • Casjens S.R., Gilcrease E.B., Winn-Stapley D.A., Schicklmaier P., Schmieger H., Pedulla M.L., et al. The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy. J. Bacteriol. 187 (2005) 1091-1104
    • (2005) J. Bacteriol. , vol.187 , pp. 1091-1104
    • Casjens, S.R.1    Gilcrease, E.B.2    Winn-Stapley, D.A.3    Schicklmaier, P.4    Schmieger, H.5    Pedulla, M.L.6
  • 77
    • 12344251589 scopus 로고    scopus 로고
    • Complete genome sequence of bacteriophage T5
    • Wang J., Jiang Y., Vincent M., Sun Y., Yu H., Bao Q., et al. Complete genome sequence of bacteriophage T5. Virology 332 (2005) 45-65
    • (2005) Virology , vol.332 , pp. 45-65
    • Wang, J.1    Jiang, Y.2    Vincent, M.3    Sun, Y.4    Yu, H.5    Bao, Q.6
  • 78
    • 35548995474 scopus 로고    scopus 로고
    • Complete genomic sequence and mass spectrometric analysis of highly diverse, atypical Bacillus thuringiensis phage 0305φ{symbol}8-36
    • Thomas J.A., Hardies S.C., Rolando M., Hayes S.J., Lieman K., Carroll C.A., et al. Complete genomic sequence and mass spectrometric analysis of highly diverse, atypical Bacillus thuringiensis phage 0305φ{symbol}8-36. Virology 368 (2007) 405-421
    • (2007) Virology , vol.368 , pp. 405-421
    • Thomas, J.A.1    Hardies, S.C.2    Rolando, M.3    Hayes, S.J.4    Lieman, K.5    Carroll, C.A.6
  • 79
    • 0000332222 scopus 로고
    • Evolution of dsDNA tailed-bacteriophage genomes
    • Casjens S., Hatfull G., and Hendrix R. Evolution of dsDNA tailed-bacteriophage genomes. Sem. Virol. 3 (1992) 383-397
    • (1992) Sem. Virol. , vol.3 , pp. 383-397
    • Casjens, S.1    Hatfull, G.2    Hendrix, R.3
  • 80
    • 0017719249 scopus 로고
    • Restriction fragment analysis of the temporal program of bacteriophage SPO1 transcription and its control by phage-modified RNA polymerases
    • Talkington C., and Pero J. Restriction fragment analysis of the temporal program of bacteriophage SPO1 transcription and its control by phage-modified RNA polymerases. Virology 83 (1977) 365-379
    • (1977) Virology , vol.83 , pp. 365-379
    • Talkington, C.1    Pero, J.2
  • 82
    • 14644422590 scopus 로고    scopus 로고
    • Nucleotide sequence of the head assembly gene cluster of bacteriophage L and decoration protein characterization
    • Gilcrease E.B., Winn-Stapley D.A., Hewitt F.C., Joss L., and Casjens S.R. Nucleotide sequence of the head assembly gene cluster of bacteriophage L and decoration protein characterization. J. Bacteriol. 187 (2005) 2050-2057
    • (2005) J. Bacteriol. , vol.187 , pp. 2050-2057
    • Gilcrease, E.B.1    Winn-Stapley, D.A.2    Hewitt, F.C.3    Joss, L.4    Casjens, S.R.5
  • 83
    • 0028788054 scopus 로고
    • Characterization of cryptic prophages (monocins) in Listeria and sequence analysis of a holin/endolysin gene
    • Zink R., Loessner M.J., and Scherer S. Characterization of cryptic prophages (monocins) in Listeria and sequence analysis of a holin/endolysin gene. Microbiology 141 (1995) 2577-2584
    • (1995) Microbiology , vol.141 , pp. 2577-2584
    • Zink, R.1    Loessner, M.J.2    Scherer, S.3
  • 84
    • 0017656093 scopus 로고
    • Multiple origins of replication for Bacillus subtilis phage SPO1
    • Glassberg J., Franck M., and Stewart C.R. Multiple origins of replication for Bacillus subtilis phage SPO1. Virology 78 (1977) 433-441
    • (1977) Virology , vol.78 , pp. 433-441
    • Glassberg, J.1    Franck, M.2    Stewart, C.R.3
  • 85
    • 16844380010 scopus 로고    scopus 로고
    • A complex mechanism determines polarity of DNA replication fork arrest by the replication terminator complex of Bacillus subtilis
    • Duggin I.G., Matthews J.M., Dixon N.E., Wake R.G., and Mackay J.P. A complex mechanism determines polarity of DNA replication fork arrest by the replication terminator complex of Bacillus subtilis. J. Biol. Chem. 280 (2005) 13105-13113
    • (2005) J. Biol. Chem. , vol.280 , pp. 13105-13113
    • Duggin, I.G.1    Matthews, J.M.2    Dixon, N.E.3    Wake, R.G.4    Mackay, J.P.5
  • 87
    • 0017334587 scopus 로고
    • Initiation and termination mutants of Bacillus subtilis bacteriophage SPO1
    • Glassberg J., Franck M., and Stewart C.R. Initiation and termination mutants of Bacillus subtilis bacteriophage SPO1. J. Virol. 21 (1977) 147-152
    • (1977) J. Virol. , vol.21 , pp. 147-152
    • Glassberg, J.1    Franck, M.2    Stewart, C.R.3
  • 88
    • 0015045522 scopus 로고
    • RNA synthesis during bacteriophage SPO1 development: II. Some modulations and prerequisites of the transcription program
    • Gage L.P., and Geiduschek E.P. RNA synthesis during bacteriophage SPO1 development: II. Some modulations and prerequisites of the transcription program. Virology 44 (1971) 200-210
    • (1971) Virology , vol.44 , pp. 200-210
    • Gage, L.P.1    Geiduschek, E.P.2
  • 89
    • 0022002292 scopus 로고
    • Bacteriophage SPO1 DNA polymerase and the activity of viral gene 31
    • De Antoni G.L., Besso N.E., Zanassi G.E., Sarachu A.N., and Grau O. Bacteriophage SPO1 DNA polymerase and the activity of viral gene 31. Virology 143 (1985) 16-22
    • (1985) Virology , vol.143 , pp. 16-22
    • De Antoni, G.L.1    Besso, N.E.2    Zanassi, G.E.3    Sarachu, A.N.4    Grau, O.5
  • 90
    • 0016687390 scopus 로고
    • Bacteriophage SPO1 DNA- and RNA-directed protein synthesis in vitro: comparison with in vivo control
    • Shub D.A. Bacteriophage SPO1 DNA- and RNA-directed protein synthesis in vitro: comparison with in vivo control. Mol. Gen. Genet. 137 (1975) 171-180
    • (1975) Mol. Gen. Genet. , vol.137 , pp. 171-180
    • Shub, D.A.1
  • 91
    • 0015163896 scopus 로고
    • Early and late gene function in bacteriophage SP82
    • Kahan E. Early and late gene function in bacteriophage SP82. Virology 46 (1971) 634-637
    • (1971) Virology , vol.46 , pp. 634-637
    • Kahan, E.1
  • 92
    • 0018801272 scopus 로고
    • The properties of a bacteriophage T5 mutant unable to induce deoxyuridine 5′-triphosphate nucleotidohydrolase. Synthesis of uracil-containing T5 deoxyribonucleic acid
    • Warner H.R., Thompson R.B., Mozer T.J., and Duncan B.K. The properties of a bacteriophage T5 mutant unable to induce deoxyuridine 5′-triphosphate nucleotidohydrolase. Synthesis of uracil-containing T5 deoxyribonucleic acid. J. Biol. Chem. 254 (1979) 7534-7539
    • (1979) J. Biol. Chem. , vol.254 , pp. 7534-7539
    • Warner, H.R.1    Thompson, R.B.2    Mozer, T.J.3    Duncan, B.K.4
  • 93
    • 0016146893 scopus 로고
    • Deoxythymidine triphosphate-deoxyuridine triphosphate nucleotidohydrolase induced by Bacillus subtilis bacteriophage φ{symbol}e
    • Dunham L.F., and Price A.R. Deoxythymidine triphosphate-deoxyuridine triphosphate nucleotidohydrolase induced by Bacillus subtilis bacteriophage φ{symbol}e. Biochemistry 13 (1974) 2667-2672
    • (1974) Biochemistry , vol.13 , pp. 2667-2672
    • Dunham, L.F.1    Price, A.R.2
  • 95
    • 0022271271 scopus 로고
    • Transcription of Bacillus subtilis plasmid pBD64 and expression of bacteriophage SPO1 genes cloned therein
    • Curran J.F., and Stewart C.R. Transcription of Bacillus subtilis plasmid pBD64 and expression of bacteriophage SPO1 genes cloned therein. Virology 142 (1985) 98-111
    • (1985) Virology , vol.142 , pp. 98-111
    • Curran, J.F.1    Stewart, C.R.2
  • 96
    • 0022371613 scopus 로고
    • Cloning and mapping of the SPO1 genome
    • Curran J.F., and Stewart C.R. Cloning and mapping of the SPO1 genome. Virology 142 (1985) 78-97
    • (1985) Virology , vol.142 , pp. 78-97
    • Curran, J.F.1    Stewart, C.R.2
  • 97
    • 0019458561 scopus 로고
    • A transcriptional map of the bacteriophage SPO1 genome: III. A region of early and middle promoters (the gene 28 region)
    • Chelm B.K., Romeo J.M., Brennan S.M., and Geiduschek E.P. A transcriptional map of the bacteriophage SPO1 genome: III. A region of early and middle promoters (the gene 28 region). Virology 112 (1981) 572-588
    • (1981) Virology , vol.112 , pp. 572-588
    • Chelm, B.K.1    Romeo, J.M.2    Brennan, S.M.3    Geiduschek, E.P.4
  • 98
    • 0019418055 scopus 로고
    • A transcriptional map of the bacteriophage SPO1 genome: I. The major early promoters
    • Romeo J.M., Brennan S.M., Chelm B.K., and Geiduschek E.P. A transcriptional map of the bacteriophage SPO1 genome: I. The major early promoters. Virology 111 (1981) 588-603
    • (1981) Virology , vol.111 , pp. 588-603
    • Romeo, J.M.1    Brennan, S.M.2    Chelm, B.K.3    Geiduschek, E.P.4
  • 99
    • 0019503461 scopus 로고
    • A transcriptional map of the bacteriophage SPO1 genome: II. The major early transcription units
    • Brennan S.M., Chelm B.K., Romeo J.M., and Geiduschek E.P. A transcriptional map of the bacteriophage SPO1 genome: II. The major early transcription units. Virology 111 (1981) 604-628
    • (1981) Virology , vol.111 , pp. 604-628
    • Brennan, S.M.1    Chelm, B.K.2    Romeo, J.M.3    Geiduschek, E.P.4
  • 100
    • 0034022882 scopus 로고    scopus 로고
    • The Bacillus subtilis HBsu protein modifies the effects of alpha/beta-type, small acid-soluble spore proteins on DNA
    • Ross M.A., and Setlow P. The Bacillus subtilis HBsu protein modifies the effects of alpha/beta-type, small acid-soluble spore proteins on DNA. J. Bacteriol. 182 (2000) 1942-1948
    • (2000) J. Bacteriol. , vol.182 , pp. 1942-1948
    • Ross, M.A.1    Setlow, P.2
  • 101
    • 33748165572 scopus 로고    scopus 로고
    • A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes
    • Filee J., Bapteste E., Susko E., and Krisch H.M. A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes. Mol. Biol. Evol. 23 (2006) 1688-1696
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 1688-1696
    • Filee, J.1    Bapteste, E.2    Susko, E.3    Krisch, H.M.4
  • 104
    • 0035949626 scopus 로고    scopus 로고
    • A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2
    • Hambly E., Tetart F., Desplats C., Wilson W.H., Krisch H.M., and Mann N.H. A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2. Proc. Natl Acad. Sci. USA 98 (2001) 11411-11416
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 11411-11416
    • Hambly, E.1    Tetart, F.2    Desplats, C.3    Wilson, W.H.4    Krisch, H.M.5    Mann, N.H.6
  • 105
    • 33745131415 scopus 로고    scopus 로고
    • Genetic richness of vibriophages isolated in a coastal environment
    • Comeau A.M., Chan A.M., and Suttle C.A. Genetic richness of vibriophages isolated in a coastal environment. Environ. Microbiol. 8 (2006) 1164-1176
    • (2006) Environ. Microbiol. , vol.8 , pp. 1164-1176
    • Comeau, A.M.1    Chan, A.M.2    Suttle, C.A.3
  • 106
    • 34247602006 scopus 로고    scopus 로고
    • Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery
    • Comeau A.M., Bertrand C., Letarov A., Tetart F., and Krisch H.M. Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery. Virology 362 (2007) 384-396
    • (2007) Virology , vol.362 , pp. 384-396
    • Comeau, A.M.1    Bertrand, C.2    Letarov, A.3    Tetart, F.4    Krisch, H.M.5
  • 107
    • 24644448794 scopus 로고    scopus 로고
    • Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere
    • Filee J., Tetart F., Suttle C.A., and Krisch H.M. Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere. Proc. Natl Acad. Sci. USA 102 (2005) 12471-12476
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 12471-12476
    • Filee, J.1    Tetart, F.2    Suttle, C.A.3    Krisch, H.M.4
  • 108
    • 22544460255 scopus 로고    scopus 로고
    • The viriosphere, diversity, and genetic exchange within phage communities
    • Hambly E., and Suttle C.A. The viriosphere, diversity, and genetic exchange within phage communities. Curr. Opin. Microbiol. 8 (2005) 444-450
    • (2005) Curr. Opin. Microbiol. , vol.8 , pp. 444-450
    • Hambly, E.1    Suttle, C.A.2
  • 109
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: the complexity hypothesis
    • Jain R., Rivera M.C., and Lake J.A. Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Natl Acad. Sci. USA 96 (1999) 3801-3806
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 110
    • 33747369803 scopus 로고    scopus 로고
    • Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts
    • Sullivan M.B., Lindell D., Lee J.A., Thompson L.R., Bielawski J.P., and Chisholm S.W. Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts. PLoS Biol. 4 (2006) e234
    • (2006) PLoS Biol. , vol.4
    • Sullivan, M.B.1    Lindell, D.2    Lee, J.A.3    Thompson, L.R.4    Bielawski, J.P.5    Chisholm, S.W.6
  • 111
    • 17644410730 scopus 로고    scopus 로고
    • The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains
    • Mann N.H., Clokie M.R., Millard A., Cook A., Wilson W.H., Wheatley P.J., et al. The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains. J. Bacteriol. 187 (2005) 3188-3200
    • (2005) J. Bacteriol. , vol.187 , pp. 3188-3200
    • Mann, N.H.1    Clokie, M.R.2    Millard, A.3    Cook, A.4    Wilson, W.H.5    Wheatley, P.J.6
  • 114
    • 29244485920 scopus 로고    scopus 로고
    • Yersiniophage φ{symbol}R1-37 is a tailed bacteriophage having a 270 kb DNA genome with thymidine replaced by deoxyuridine
    • Kiljunen S., Hakala K., Pinta E., Huttunen S., Pluta P., Gador A., et al. Yersiniophage φ{symbol}R1-37 is a tailed bacteriophage having a 270 kb DNA genome with thymidine replaced by deoxyuridine. Microbiology 151 (2005) 4093-4102
    • (2005) Microbiology , vol.151 , pp. 4093-4102
    • Kiljunen, S.1    Hakala, K.2    Pinta, E.3    Huttunen, S.4    Pluta, P.5    Gador, A.6
  • 115
    • 33751070265 scopus 로고    scopus 로고
    • Thermus thermophilus bacteriophage φ{symbol}YS40 genome and proteomic characterization of virions
    • Naryshkina T., Liu J., Florens L., Swanson S.K., Pavlov A.R., Pavlova N.V., et al. Thermus thermophilus bacteriophage φ{symbol}YS40 genome and proteomic characterization of virions. J. Mol. Biol. 364 (2006) 667-677
    • (2006) J. Mol. Biol. , vol.364 , pp. 667-677
    • Naryshkina, T.1    Liu, J.2    Florens, L.3    Swanson, S.K.4    Pavlov, A.R.5    Pavlova, N.V.6
  • 116
    • 37249003841 scopus 로고    scopus 로고
    • Isolation and characterization of a novel Enterococcus faecalis bacteriophage φ{symbol}EF24C as a therapeutic candidate
    • Uchiyama J., Rashel M., Maeda Y., Takemura I., Sugihara S., Akechi K., et al. Isolation and characterization of a novel Enterococcus faecalis bacteriophage φ{symbol}EF24C as a therapeutic candidate. FEMS Microbiol. Lett. 278 (2008) 200-206
    • (2008) FEMS Microbiol. Lett. , vol.278 , pp. 200-206
    • Uchiyama, J.1    Rashel, M.2    Maeda, Y.3    Takemura, I.4    Sugihara, S.5    Akechi, K.6
  • 117
    • 0032486603 scopus 로고    scopus 로고
    • The polyvalent staphylococcal phage φ{symbol}812: its host-range mutants and related phages
    • Pantucek R., Rosypalova A., Doskar J., Kailerova J., Ruzickova V., Borecka P., et al. The polyvalent staphylococcal phage φ{symbol}812: its host-range mutants and related phages. Virology 246 (1998) 241-252
    • (1998) Virology , vol.246 , pp. 241-252
    • Pantucek, R.1    Rosypalova, A.2    Doskar, J.3    Kailerova, J.4    Ruzickova, V.5    Borecka, P.6
  • 118
    • 0036597231 scopus 로고    scopus 로고
    • Bacteriophages: evolution of the majority
    • Hendrix R.W. Bacteriophages: evolution of the majority. Theor. Popul. Biol. 61 (2002) 471-480
    • (2002) Theor. Popul. Biol. , vol.61 , pp. 471-480
    • Hendrix, R.W.1
  • 119
    • 0034716946 scopus 로고    scopus 로고
    • Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages
    • Juhala R.J., Ford M.E., Duda R.L., Youlton A., Hatfull G.F., and Hendrix R.W. Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages. J. Mol. Biol. 299 (2000) 27-51
    • (2000) J. Mol. Biol. , vol.299 , pp. 27-51
    • Juhala, R.J.1    Ford, M.E.2    Duda, R.L.3    Youlton, A.4    Hatfull, G.F.5    Hendrix, R.W.6
  • 120
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D., Abajian C., and Green P. Consed: a graphical tool for sequence finishing. Genome Res. 8 (1998) 195-202
    • (1998) Genome Res. , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 122
    • 0032518163 scopus 로고    scopus 로고
    • Microbial gene identification using interpolated Markov models
    • Salzberg S.L., Delcher A.L., Kasif S., and White O. Microbial gene identification using interpolated Markov models. Nucleic Acids Res. 26 (1998) 544-548
    • (1998) Nucleic Acids Res. , vol.26 , pp. 544-548
    • Salzberg, S.L.1    Delcher, A.L.2    Kasif, S.3    White, O.4
  • 123
    • 0000241874 scopus 로고
    • GeneMark: parallel gene recognition for both strands
    • Borodovsky M., and McInish J. GeneMark: parallel gene recognition for both strands. Comput. Chem. 17 (1993) 123-133
    • (1993) Comput. Chem. , vol.17 , pp. 123-133
    • Borodovsky, M.1    McInish, J.2
  • 124
    • 0028249153 scopus 로고
    • DNA Strider. a Macintosh program for handling protein and nucleic acid sequences
    • Douglas S.E. DNA Strider. a Macintosh program for handling protein and nucleic acid sequences. Methods Mol. Biol. 25 (1994) 181-194
    • (1994) Methods Mol. Biol. , vol.25 , pp. 181-194
    • Douglas, S.E.1
  • 125
    • 0002715818 scopus 로고
    • Gene expression systems for Bacillus subtilis
    • Harwood C.R. (Ed), Plenum Press, New York, NY
    • Mountain A. Gene expression systems for Bacillus subtilis. In: Harwood C.R. (Ed). Bacillus (1989), Plenum Press, New York, NY 73-114
    • (1989) Bacillus , pp. 73-114
    • Mountain, A.1
  • 126
    • 0016745081 scopus 로고
    • Nature of the suppressor of Bacillus subtilis HA101B
    • Shub D.A. Nature of the suppressor of Bacillus subtilis HA101B. J. Bacteriol. 122 (1975) 788-790
    • (1975) J. Bacteriol. , vol.122 , pp. 788-790
    • Shub, D.A.1
  • 127
    • 0017797928 scopus 로고
    • Early development of bacteriophages SPO1 and SP82G in minicells of Bacillus subtilis
    • Reeve J.N., Mertens G., and Amann E. Early development of bacteriophages SPO1 and SP82G in minicells of Bacillus subtilis. J. Mol. Biol. 120 (1978) 183-207
    • (1978) J. Mol. Biol. , vol.120 , pp. 183-207
    • Reeve, J.N.1    Mertens, G.2    Amann, E.3
  • 128
    • 0001355855 scopus 로고    scopus 로고
    • RNA polymerase and sigma factors
    • Sonenshein A.L., Hoch J.A., and Losick R. (Eds), American Society for Microbiology, Washington, DC
    • Helmann J.D., and Moran C.P. RNA polymerase and sigma factors. In: Sonenshein A.L., Hoch J.A., and Losick R. (Eds). Bacillus subtilis and Its Closest Relatives: From Genes to Cells (2002), American Society for Microbiology, Washington, DC 289-312
    • (2002) Bacillus subtilis and Its Closest Relatives: From Genes to Cells , pp. 289-312
    • Helmann, J.D.1    Moran, C.P.2
  • 129
    • 0029041524 scopus 로고
    • Compilation and analysis of Bacillus subtilis sigma A-dependent promoter sequences: evidence for extended contact between RNA polymerase and upstream promoter DNA
    • Helmann J.D. Compilation and analysis of Bacillus subtilis sigma A-dependent promoter sequences: evidence for extended contact between RNA polymerase and upstream promoter DNA. Nucleic Acids Res. 23 (1995) 2351-2360
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2351-2360
    • Helmann, J.D.1
  • 131
    • 0347126296 scopus 로고    scopus 로고
    • DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics
    • Makita Y., Nakao M., Ogasawara N., and Nakai K. DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. Nucleic Acids Res. 32 (2004) D75-D77
    • (2004) Nucleic Acids Res. , vol.32
    • Makita, Y.1    Nakao, M.2    Ogasawara, N.3    Nakai, K.4


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