Expression of a truncated ATHB17 protein in maize increases ear weight at silking

PLoS ONE

Volumn 9, Issue 4, 2014, Pages

  Rice, Elena A ^a   Khandelwal , Abha ^a   Creelman, Robert A ^b   Griffith, Cara ^a   Ahrens, Jeffrey E ^a   Taylor, J Philip ^a   Murphy, Lesley R ^a   Manjunath, Siva ^a   Thompson, Rebecca L ^a   Lingard, Matthew J ^a   Back, Stephanie L ^a   Larue, Huachun ^a   Brayton, Bonnie R ^c   Burek, Amanda J ^b   Tiwari, Shiv ^d   Adam, Luc ^e   Morrell, James A ^a   Caldo, Rico A ^a   Huai, Qing ^a   Kouadio, Jean Louis K ^a   Kuehn, Rosemarie ^a   Sant, Anagha M ^a   Wingbermuehle, William J ^a   Sala, Rodrigo ^a   Foster, Matt ^a   Kinser, Josh D ^a   Mohanty, Radha ^a   Jiang, Dongming ^a   Ziegler, Todd E ^a   Huang, Mingya G ^a   Kuriakose, Saritha V ^a   Skottke, Kyle ^a   Repetti, Peter P ^b   Reuber, T Lynne ^b   Ruff, Thomas G ^a   Petracek, Marie E ^a   Loida, Paul J ^a   more..

^a MONSANTO COMPANY   (United States)

^b Mendel Biotechnology   (United States)

^c Dupont Pioneer Hi Bred International   (United States)

^d Pioneer Hi Bred International   (United States)

^e Epitomics   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HETERODIMER; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR HD ZIP 2; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN; HB17 PROTEIN, ARABIDOPSIS;

AMINO TERMINAL SEQUENCE; ARTICLE; ATHB17 GENE; CELLULAR DISTRIBUTION; CONTROLLED STUDY; DNA SEQUENCE; GENE EXPRESSION; GENE REPRESSION; GENE TARGETING; GENETIC TRANSCRIPTION; MAIZE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLANT DEVELOPMENT; PLANT GENE; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN MOTIF; SIGNAL TRANSDUCTION; SILKING; ACTIVE TRANSPORT; AMINO ACID SEQUENCE; BODY WEIGHT; CELL NUCLEUS; CHEMISTRY; CONSENSUS SEQUENCE; CYTOLOGY; GENE DELETION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGY; PROTEIN MULTIMERIZATION; PROTEIN QUATERNARY STRUCTURE; PROTOPLAST; REPRODUCTION;

ACTIVE TRANSPORT, CELL NUCLEUS; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; ARABIDOPSIS PROTEINS; BODY WEIGHT; CELL NUCLEUS; CONSENSUS SEQUENCE; GENE EXPRESSION; MOLECULAR SEQUENCE DATA; PROTEIN MULTIMERIZATION; PROTEIN STRUCTURE, QUATERNARY; PROTOPLASTS; REPRODUCTION; SEQUENCE DELETION; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; ZEA MAYS;

EID: 84899675220     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0094238     Document Type: Article

References (78)

1. Ariel FD, Manavella PA, Dezar CA, Chan RL (2007) The true story of the HDZip family. Trends in Plant Science 12: 419-426.
2. Ruberti I, Sessa G, Lucchetti S, Morelli G (1991) A novel class of plant proteins containing a homeodomain with a closely linked leucine zipper motif. EMBO J 10: 1787-1791. (Pubitemid 21905646)
3. Mukherjee K, Brocchieri L, Burglin TR (2009) A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes. Molecular Biology and Evolution 26: 2775-2794.
4. Sessa G, Morelli G, Ruberti I (1993) The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities. EMBO J 12: 3507-3517. (Pubitemid 23256438)
5. Steindler C, Matteucci A, Sessa G, Weimar T, Ohgishi M, et al. (1999) Shade avoidance responses are mediated by the ATHB-2 HD-Zip protein, a negative regulator of gene expression. Development 126: 4235-4245. (Pubitemid 29509339)
6. Ohgishi M, Oka A, Morelli G, Ruberti I, Aoyama T (2001) Negative autoregulation of the Arabidopsis homeobox gene ATHB-2. Plant Journal 25: 389-398. (Pubitemid 32235072)
7. Henriksson E (2005) Homeodomain Leucine Zipper Class I Genes in Arabidopsis. Expression Patterns and Phylogenetic Relationships. Plant Physiology 139: 509-518. (Pubitemid 43951633)
8. Sorin C, Salla-Martret M, Bou-Torrent J, Roig-Villanova I, Martińez-Garciá JF (2009) ATHB4, a regulator of shade avoidance, modulates hormone response in Arabidopsis seedlings. The Plant Journal 59: 266-277.
9. Rerie WG, Feldmann KA, Marks MD (1994) The GLABRA2 gene encodes a homeo domain protein required for normal trichome development in Arabidopsis. Genes Dev 8: 1388-1399. (Pubitemid 24189806)
10. Lu P, Porat R, Nadeau JA, O'Neill SD (1996) Identification of a meristem L1 layer-specific gene in Arabidopsis that is expressed during embryonic pattern formation and defines a new class of homeobox genes. The Plant Cell 8: 2155- 2168. (Pubitemid 126446954)
11. Ito M, Sato Y, Matsuoka M (2002) Involvement of homeobox genes in early body plan of monocot. Int Rev Cytol 218: 1-35. (Pubitemid 34856463)
12. Ohashi-Ito K, Demura T, Fukuda H (2002) Promotion of transcript accumulation of novel Zinnia immature xylem-specific HD-Zip III homeobox genes by brassinosteroids. Plant and Cell Physiology 43: 1146-1153. (Pubitemid 35337210)
13. Nakamura M, Katsumata H, Abe M, Yabe N, Komeda Y, et al. (2006) Characterization of the class IV homeodomain-leucine zipper gene family in Arabidopsis. Plant Physiology 141: 1363-1375. (Pubitemid 44223288)
14. McConnell JR, Barton MK (1998) Leaf polarity and meristem formation in Arabidopsis. Development (Cambridge, England) 125: 2935-2942. (Pubitemid 28410217)
15. McConnell JR, Emery J, Eshed Y, Bao N, Bowman J, et al. (2001) Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 411: 709-713. (Pubitemid 32531678)
16. Ohashi-Ito K, Kubo M, Demura T, Fukuda H (2005) Class III homeodomain leucine-zipper proteins regulate xylem cell differentiation. Plant and Cell Physiology 46: 1646-1656. (Pubitemid 41619482)
17. Emery JF, Floyd SK, Alvarez J, Eshed Y, Hawker NP, et al. (2003) Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes. Current biology: CB 13: 1768-1774. (Pubitemid 37269117)
18. Ohashi-Ito K, Fukuda H (2003) HD-Zip III homeobox genes that include a novel member, ZeHB-13 (Zinnia)/ATHB-15 (Arabidopsis), are involved in procambium and xylem cell differentiation. Plant and Cell Physiology 44: 1350- 1358. (Pubitemid 38157755)
19. Green KA, Prigge MJ, Katzman RB, Clark SE (2005) CORONA, a member of the class III homeodomain leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis. The Plant Cell 17: 691-704. (Pubitemid 43138214)
20. Agalou A, Purwantomo S, Övernäs E, Johannesson H, Zhu X, et al. (2007) A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Molecular Biology 66: 87-103.
21. Qin YF, Li DD, Wu YJ, Liu ZH, Zhang J, et al. (2010) Three cotton homeobox genes are preferentially expressed during early seedling development and in response to phytohormone signaling. Plant Cell Reports 29: 1147-1156.
22. Zhao Y, Zhou Y, Jiang H, Li X, Gan D, et al. (2011) Systematic analysis of sequences and expression patterns of drought-responsive members of the HDZip gene family in maize. PLoS One 6: e28488.
23. Khanna R, Shen Y, Toledo-Ortiz G, Kikis EA, Johannesson H, et al. (2006) Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation. Plant Cell 18: 2157-2171. (Pubitemid 44484717)
24. Hymus GJ, Cai S, Kohl EA, Holtan HE, Marion CM et al (2013) Application of AtHB17, an Arabidopsis homeodomain leucine zipper transcription factor, to regulate chloroplast number and photosynthetic capacity. Journal of Experimental Botany 64: 4479-4490.
25. Ciarbelli AR, Ciolfi A, Salvucci S, Ruzza V, Possenti M, et al. (2008) The Arabidopsis Homeodomain-leucine Zipper II gene family: diversity and redundancy. Plant Molecular Biology 68: 465-478.
26. Zúñiga-Mayo VM, Marsch-Martínez N, deFolter S (2012) JAIBA, a class-II HD-ZIP transcription factor involved in the regulation of meristematic activity, and important for correct gynoecium and fruit development in Arabidopsis. The Plant Journal 71: 314-326.
27. Bou-Torrent J, Salla-Martret M, Brandt R, Musielak T, Palauqui J-C, et al. (2012) ATHB4 and HAT3, two class II HD-ZIP transcription factors, control leaf development in Arabidopsis. Plant Signaling & Behavior 7: 1382-1387.
28. Turchi L, Carabelli M, Ruzza V, Possenti M, Sassi M, et al. (2013) Arabidopsis HD-Zip II transcription factors control apical embryo development and meristem function. Development 140: 2118-2129.
29. Nawy T, Lee JY, Colinas J, Wang JY, Thongrod SC, et al. (2005) Transcriptional profile of the Arabidopsis root quiescent center. Plant Cell 17: 1908-1925.
30. Meijer AH, de Kam RJ, d'Erfurth I, Shen W, Hoge JH (2000) HD-Zip proteins of families I and II from rice: interactions and functional properties. Mol Gen Genet 263: 12-21.
31. Park MY, Kim S-a, Lee S-j, Kim SY (2013) ATHB17 is a positive regulator of abscisic acid response during early seedling growth. Molecules and Cells 35: 125-133.
32. Liu J-X, Srivastava R, Che P, Howell SH (2007) An endoplasmic reticulum stress response in Arabidopsis is mediated by proteolytic processing and nuclear relocation of a membrane-associated transcription factor, bZIP28. The Plant Cell 19: 4111-4119. (Pubitemid 351253122)
33. Harter K, Kircher S, Frohnmeyer H, Krenz M, Nagy F, et al. (1994) Lightregulated modification and nuclear translocation of cytosolic G-box binding factors in parsley. The Plant cell 6: 545-559.
34. Liu Z, Karmarkar V (2008) Groucho/Tup1 family co-repressors in plant development. Trends in plant science 13: 137-144.
35. Iwata Y, Koizumi N (2005) An Arabidopsis transcription factor, AtbZIP60, regulates the endoplasmic reticulum stress response in a manner unique to plants. Procceedings of National Academy of Science 102: 5280-5285.
36. Nakai K, Kanehisa M (1991) Expert system for predicting protein localization sites in gram-negative bacteria. Proteins 11: 95-110.
37. Hicks GR, Raikhel NV (1995) Protein import into the nucleus: An integrated view. Annual review of Cell Developmental Biology 11: 155-188.
38. Tiwari S, Wang S, Hagen G, Guilfoyle TJ (2006) Transfection assays with protoplasts containing integrated reporter genes. Methods Mol Biol 323: 237- 244.
39. Sawa S, Ohgishi M, Goda H, Higuchi K, Shimada Y, et al. (2002) The HAT2 gene, a member of the HD-Zip gene family, isolated as an auxin inducible gene by DNA microarray screening, affects auxin response in Arabidopsis. Plant Journal 32: 1011-1022. (Pubitemid 36108067)
40. Tiwari SB, Hagen G, Guilfoyle TJ (2004) Aux/IAA proteins contain a potent transcriptional repression domain. The Plant cell 16: 533-543. (Pubitemid 38192708)
41. Ikeda M, Ohme-Takagi M (2009) A novel group of transcriptional repressors in Arabidopsis. Plant & cell physiology 50: 970-975.
42. Goodall GJ, Filipowicz W (1991) Different effects of intron nucleotide composition and secondary structure on pre-mRNA splicing in monocot and dicot plants. The EMBO journal 10: 2635-2644. (Pubitemid 21905740)
43. Frank W, Phillips J, Salamini F, Bartels D (1998) Two dehydration-inducible transcripts from the resurrection plant Craterostigma plantagineum encode interacting homeodomain-leucine zipper proteins. The Plant journal: For cell and molecular biology 15: 413-421.
44. Deng X, Phillips J, Meijer AH, Salamini F, Bartels D (2002) Characterization of five novel dehydration-responsive homeodomain leucine zipper genes from the resurrection plant Craterostigma plantagineum. Plant Molecular Biology 49: 601-610. (Pubitemid 34609170)
45. Kissinger CR, Liu BS, Martinblanco E, Kornberg TB, Pabo CO (1990) Crystalstructure of an engrailed homeodomain-DNA complex at 2.8-angstrom resolution-a framework for understanding homeodomain-DNA interactions. Cell 63: 579-590.
46. Iven T, Strathmann A, Böttner S, Zwafink T, Heinekamp T, et al. (2010) Homo- And heterodimers of tobacco bZIP proteins counteract as positive or negative regulators of transcription during pollen development. The Plant Journal 63: 155-166.
47. Staudt A-C, Wenkel S (2010) Regulation of protein function by 'microProteins'. EMBO reports 12: 35-42.
48. Seo PJ, Hong SY, Kim SG, Park CM (2011) Competitive inhibition of transcription factors by small interfering peptides. Trends Plant Sci 16: 541-549.
49. Chico JM, Chini A, Fonseca S, Solano R (2008) JAZ repressors set the rhythm in jasmonate signaling. Current Opinion in Plant Biology 11: 486-494.
50. Wenkel S, Emery J, Hou B, Evans M, Barton MK (2007) A feedback regulatory module formed by LITTLE ZIPPER and HD-ZIPIII genes. Plant Cell 19: 3379-3390.
51. Harris JC, Hrmova M, Lopato S, Langridge P (2011) Modulation of plant growth by HD-Zip class I and II transcription factors in response to environmental stimuli. New Phytologist 190: 823-837.
52. Jones RJ, Schreiber BMN, Roessler JA (1996) Kernel sink capacity in maize: Genotypic and maternal regulation. Crop Science 36: 301-306. (Pubitemid 126541182)
53. Gambin BL, Borras L (2010) Resource distribution and the trade-off between seed number and seed weight: A comparison across crop species. Annals of Applied Biology 156: 91-102.
54. Liu R, Jia H, Cao X, Huang J, Li F, et al. (2012) Fine mapping and candidate gene prediction of a pleiotropic quantitative trait locus for yield-related trait in Zea mays. PLoS ONE 7: e49836.
55. Lee EA, Tollenaar M (2007) Physiological Basis of Successful Breeding Strategies for Maize Grain Yield Crop Sci 47: S202-S213.
56. Borrás L, Gambín BL (2010) Trait dissection of maize kernel weight: Towards integrating hierarchical scales using a plant growth approach. Field Crops Research 118: 1-12.
57. Borrás L, Westgate ME (2006) Predicting maize kernel sink capacity early in development. Field Crops Research 95: 223-233. (Pubitemid 43048793)
58. Maddonni GA, Otegui ME, Bonhomme R (1998) Grain yield components in maize - II. Postsilking growth and kernel weight. Field Crops Research 56: 257- 264. (Pubitemid 28324436)
59. Echarte L, Andrade FH, Sadras VO, Abbate P (2006) Kernel weight and its response to source manipulations during grain filling in Argentinean maize hybrids released in different decades. Field Crops Research 96: 307-312. (Pubitemid 43246974)
60. Elmore R (2010) Reduced 2010 Corn Yield Forecasts Reflect Warm Temperatures between Silking and Dent Integrated Crop Management News; Iowa State University Extension and Outreach.
61. Meijer AH, Scarpella E, van Dijk EL, Qin L, Taal AJ, et al. (1997) Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice. Plant Journal 11: 263-276. (Pubitemid 27147973)
62. Ritchie SW, Hanway JJ, Benson GO (1997) How a corn plant develops. Iowa State University of Science and Technology.
63. Lee GJ, Pokala N, Vierling E (1995) Structure and in vitro molecular chaperone activity of cytosolic small heat shock proteins from pea. J Biol Chem 270: 10432- 10438.
64. Lund AA, Blum PH, Bhattramakki D, Elthon TE (1998) Heat-stress response of maize mitochondria. Plant Physiology 116: 1097-1110. (Pubitemid 128485056)
65. Lorkovic ZJ, Barta A (2002) Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. Nucleic Acids Res 30: 623-635. (Pubitemid 34679626)
66. Kabbage M, Dickman MB (2008) The BAG proteins: A ubiquitous family of chaperone regulators. Cellular and molecular life sciences: CMLS 65: 1390- 1402.
67. Hayashi S, Ishii T, Matsunaga T, Tominaga R, Kuromori T, et al. (2008) The glycerophosphoryl diester phosphodiesterase-like proteins SHV3 and its homologs play important roles in cell wall organization. Plant & cell physiology 49: 1522-1535.
68. Du L, Poovaiah BW (2004) A novel family of Ca2+/calmodulin-binding proteins involved in transcriptional regulation: interaction with fsh/Ring3 class transcription activators. Plant Molecular Biology 54: 549-569. (Pubitemid 39182621)
69. Kasuga M, Liu Q, Miura S, Yamaguchi-Shinozaki K, Shinozaki K (1999) Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nat Biotechnol 17: 287-291. (Pubitemid 29122637)
70. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0.. Bioinformatics (Oxford, England) 23: 2947-2948. (Pubitemid 350162903)
71. Skuzeski JM, Nichols LM, Gesteland RF (1990) Analysis of leaky viral translation termination codons in vivo by transient expression of improved bglucuronidase vectors. Plant Molecular Biology 15: 65-79.
72. Sambrook J, Maniatis T, Fritsch EF (1989) Molecular cloning: A laboratory manual, Ed 2.. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
73. Sidorov V, Duncan D (2009) Agrobacterium-mediated maize transformation: immature embryos versus callus. Methods Mol Biol 526: 47-58.
74. Abel S, Theologis A (1994) Transient transformation of Arabidopsis leaf protoplasts: A versatile experimental system to study gene expression. Plant Journal 5: 421-427.
75. Sheen JY, Bogorad L (1985) Differential expression of the ribulose bisphosphate carboxylase large subunit gene in bundle sheath and mesophyll cells of developing maize leaves is influenced by light. Plant Physiology 79: 1072-1076.
76. Yoo S-D, Cho Y-H, Sheen J (2007) Arabidopsis mesophyll protoplasts: A versatile cell system for transient gene expression analysis. Nature protocols 2: 1565-1572. (Pubitemid 47028844)
77. Qi Q, Gibson A, Fu X, Zheng M, Kuehn R, et al. (2012) Involvement of the Nterminal B-box domain of Arabidopsis BBX32 protein in interaction with soybean BBX62 protein. J Biol Chem 287: 31482-31493.
78. Edgar R, Domrachev M, Lash AE (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210. (Pubitemid 34679544)