Regulation of protein function by 'microProteins'

EMBO Reports

Volumn 12, Issue 1, 2011, Pages 35-42

  Staudt, Annica Carolin ^a   Wenkel, Stephan ^a  

^a UNIVERSITY OF TÜBINGEN   (Germany)

Author keywords

homotypic interactions; Iid like proteins; protein protein interaction; transcription factors

Indexed keywords

ARABIDOPSIS PROTEIN; BASIC HELIX LOOP HELIX LEUCINE ZIPPER TRANSCRIPTION FACTOR; BRASSINOSTEROID; CRYPTOCHROME; DIMER; HOMEODOMAIN PROTEIN; MESSENGER RNA; MICROPROTEIN; POLYMER; PROTEIN; TRANSCRIPTION FACTOR ARNTL; TRANSCRIPTION FACTOR CLOCK; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; BODY TEMPERATURE; CELL CYCLE; DNA BINDING; DNA TRANSCRIPTION; DWARFISM; GENE OVEREXPRESSION; HORMONE ACTION; HUMAN; LIGHT; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; TRANSLATION REGULATION;

ALTERNATIVE SPLICING; ANIMALS; CIRCADIAN CLOCKS; HOMEODOMAIN PROTEINS; HUMANS; LEUCINE ZIPPERS; MULTIPROTEIN COMPLEXES; PLANT GROWTH REGULATORS; PLANT PROTEINS; PROTEIN INTERACTION DOMAINS AND MOTIFS; PROTEIN MULTIMERIZATION;

ANIMALIA;

EID: 78650873392     PISSN: 1469221X     EISSN: 14693178     Source Type: Journal    
DOI: 10.1038/embor.2010.196     Document Type: Article

References (44)

1. Alvarez JP, Pekker I, Goldshmidt A, Blum E, Amsellem Z, Eshed Y (2006) Endogenous and synthetic micrornas stimulate simultaneous, Efficient, And localized regulation of multiple targets in diverse species. Plant Cell 18: 1134-1151
2. Atherton G, Travers H, Deed R, Norton J (1996) Regulation of cell differentiation in c2c12 myoblasts by the id3 helix-loop-helix protein. Cell Growth Differ 7: 1059-1066
3. Benezra R, Davis RL, Lockshon D, Turner DL, Weintraub H (1990) The protein id: A negative regulator of helix-loop-helix Dna binding proteins. Cell 61: 49-59
4. Berthelsen J, Zappavigna V, Ferretti E, Mavilio F, Blasi F (1998) The novel homeoprotein prep1 modulates pbx-Hox protein cooperativity. EMBO J 17: 1434-1445
5. Bhatt AM, Etchells JP, Canales C, Lagodienko A, Dickinson H (2004) VaaMana-a BEl1-like homeodomain protein, Interacts with KnoX proteins Bp and StM and regulates inflorescence stem growth in Arabidopsis. Gene 328: 103-111
6. Bishop GJ, Harrison K, Jones J (1996) The tomato Dwarf gene isolated by heterologous transposon tagging encodes the first member of A new cytochrome p450 family. Plant Cell 8: 959-969
7. Bowman JL, Floyd SK (2008) Patterning and polarity in seed plant shoots. Annu Rev Plant Biol 59: 67-88
8. Buchler NE, Cross Fr (2009) Protein sequestration generates A flexible ultrasensitive response in A genetic network. Mol Syst Biol 5: 272
9. Bürglin tr (1998) The pBc domain contains A MEinoX domain: coevolution of Hox and talE homeobox genes? Dev Genes Evol 208: 113-116
10. Duffield GE, Watson NP, Mantani A, Peirson SN, Robles-Murguia M, Loros JJ, Israel MA, Dunlap Jc (2009) A role for id2 in regulating photic entrainment of the mammalian circadian system. Curr Biol 19: 297-304
11. Hacker C et al (2003) Transcriptional profiling identifies id2 function in dendritic cell development. Nat Immunol 4: 380-386
12. He Z, Wang Z-y, Li J, Zhu Q, Lamb C, Ronald P, Chory J (2000) Perception of Brassinosteroids by the extracellular domain of the receptor kinase Bri1. Science 288: 2360-2363
13. Hornitschek P, Lorrain S, Zoete V, Michielin O, Fankhauser C (2009) Inhibition of the shade avoidance response by formation of non-Dna binding bHlH heterodimers. EMBO J 28: 3893-3902
14. Hyun Y, Lee I (2006) KiDari, Encoding A non-Dna binding bHlH protein, Represses light signal transduction in Arabidopsis thaliana. Plant Mol Biol. 61: 283-296
15. Kim y- S et al (2008) HD-zip iii activity is modulated by competitive inhibitors via A feedback loop in Arabidopsis shoot apical meristem development. Plant Cell 20: 920-933
16. Kimura S, Koenig D, Kang J, Yoong F Y, Sinha N (2008) Natural variation in leafmorphology results from mutation of A novel KnoX gene. Curr Biol 18: 672-677
17. Ko CH, Takahashi JS (2006) Molecular components of the mammalian circadian clock. Hum Mol Genet 15: r271-r277
18. Kondo T, Raff M (2000) The id4 HlH protein and the timing of oligodendrocyte differentiation. EMBO J 19: 1998-2007 (Pubitemid 30237575)
19. Laitem C, Leprivier G, Choul-li S, Begue A, Monte D, Larsimont D, Dumont P, Duterque-coquillaud M, Aumercier M (2009) Ets-1 p27: A novel Ets-1 isoform with dominant-negative effects on the transcriptional properties and the subcellular localization of Ets-1 p51. Oncogene 28: 2087-2099
20. Lee GM, Donaldson LW, Pufall MA, Kang H-S, Pot I, Graves BJ, Mcintosh lp (2005) The structural and dynamic basis of Ets-1 Dna binding autoinhibition. J Biol Chem 280: 7088-7099
21. Lorrain S, Allen T, Duek PD, Whitelam GC, Fankhauser C (2008) Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHlH transcription factors. Plant J 53: 312-323
22. Magnani E, Hake S (2008) KnoX lost the oX: the Arabidopsis KnatM gene defines A novel class of KnoX transcriptional regulators missing the homeodomain. Plant Cell 20: 875-887
23. Mei Y, Xie C, Xie W, Wu Z, Wu M (2007) Siah-1S, A novel splice variant of Siah-1 (seven in absentia homolog), Counteracts Siah-1-mediated downregulation of β-catenin. Oncogene 26: 6319-6331
24. ModrUSAn Z, Reiser L, Feldmann KA, Fischer RL, Haughn gW (1994) Homeotic transformation of ovules into carpel-like structures in Arabidopsis. Plant Cell 6: 333-349
25. Morrow MA, Mayer EW, Perez CA, Adlam M, Siu G (1999) Overexpression of the helix-loop-helix protein id2 blocks T cell development at multiple stages. Mol Immunol 36: 491-503
26. Nozue K, Covington MF, Duek PD, Lorrain S, Fankhauser C, Harmer SL, Maloof Jn (2007) Rhythmic growth explained by coincidence between internal and external cues. Nature 448: 358-361
27. Ohtani N, Zebedee Z, Huot tJg, Stinson JA, Sugimoto M, Ohashi Y, Sharrocks AD, Peters G, Hara E (2001) Opposing effects of Ets and id proteins on p16inK4a expression during cellular senescence. Nature 409: 1067-1070
28. Ossowski S, Schwab R, Weigel D (2008) Gene silencing in plants using artificial micrornas and other small rnas. Plant J 53: 674-690
29. Prigge MJ, Clark SE (2006) Evolution of the class iii HD-zip gene family in land plants. Evol Dev 8: 350-361
30. Pufall MA, Graves BJ (2002) Autoinhibitory domains: modular effectors of cellular regulation. Annu Rev Cell Dev Biol 18: 421-462
31. Reppert SM, Weaver Dr (2001) Molecular analysis of mammalian circadian rhythmns. Annu Rev Physiol 63: 647-676
32. Reppert SM, Weaver Dr (2002) Coordination of circadian timing in mammals. Nature 418: 935-941
33. Ruzinova MB, Benezra R (2003) Id proteins in development, Cell cycle and cancer. Trends Cell Biol 13: 410-418
34. Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D (2006) Highly specific gene silencing by artificial micrornas in Arabidopsis. Plant Cell 18: 1121-1133
35. Sessa G, Carabelli M, Sassi M, Ciolfi A, Possenti M, Mittempergher F, Becker J, Morelli G, Ruberti I (2005) A dynamic balance between gene activation and repression regulates the shade avoidance response in Arabidopsis. Genes Dev 19: 2811-2815
36. Shimada Y, Goda H, Nakamura A, Takatsuto S, Fujioka S, Yoshida S (2003) Organ-specific expression of brassinosteroid-biosynthetic genes and distribution of endogenous brassinosteroids in Arabidopsis. Plant Physiol 131: 287-297
37. Smith HMS, Hake S (2003) The interaction of two homeobox genes, BrEVipEDicElluS and pEnnyWiSE, Regulates internode patterning in the Arabidopsis inflorescence. Plant Cell 15: 1717-1727
38. Symons GM, Reid JB (2004) Brassinosteroids do not undergo longdistance transport in pea. implications for the regulation of endogenous brassinosteroid levels. Plant Physiol 135: 2196-2206
39. Wang H, Zhu Y, Fujioka S, Asami T, Li J, Li J (2009) Regulation of Arabidopsis brassinosteroid signaling by atypical basic helix-loop-helix proteins. Plant Cell 21: 3781-3791
40. Wang z-y, Seto H, Fujioka S, Yoshida S, Chory J (2001) Bri1 is A critical component of A plasma-membrane receptor for plant steroids. Nature 410: 380-383
41. Wenkel S, Emery J, Hou B-H, Evans MMS, Barton MK (2007) A feedback regulatory module formed by littlE zippEr and HD-zipiii genes. Plant Cell 19: 3379-3390
42. Yang Y, Hwang CK, D'Souza UM, Lee S-H, Junn E, Mouradian MM (2000) Three-amino acid extension loop homeodomain proteins Meis2 and tgiF differentially regulate transcription. J Biol Chem 275: 20734-20741
43. Yates PR, Atherton GT, Deed RW, Norton JD, Sharrocks aD (1999) Id helix-loop-helix proteins inhibit nucleoprotein complex formation by the tcF EtS-domain transcription factors. EMBO J 18: 968-976
44. Zhang l-y et al (2009) Antagonistic HlH/bHlH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis. Plant Cell 21: 3767-3780