-
1
-
-
79959875909
-
De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics
-
doi: 10.1101/gr.113779.110
-
Adamidi C, Wang Y, Gruen D, Mastrobuoni G, You X, Tolle D, Dodt M, Mackowiak SD, Gogol-Doering A, Oenal P, Rybak A, Ross E, Sánchezalvarado A, Kempa S, Dieterich C, Rajewsky N, Chen W. 2011. De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Research 21:1193-1200. doi: 10.1101/gr.113779.110.
-
(2011)
Genome Research
, vol.21
, pp. 1193-1200
-
-
Adamidi, C.1
Wang, Y.2
Gruen, D.3
Mastrobuoni, G.4
You, X.5
Tolle, D.6
Dodt, M.7
Mackowiak, S.D.8
Gogol-Doering, A.9
Oenal, P.10
Rybak, A.11
Ross, E.12
Sánchezalvarado, A.13
Kempa, S.14
Dieterich, C.15
Rajewsky, N.16
Chen, W.17
-
2
-
-
0344433408
-
Regeneration of the pharynx in a freshwater planarian: An electron-microscopic study with special reference to the formation of the pharyngeal cavity and pharyngeal Lumen
-
Asai E. 1991. Regeneration of the pharynx in a freshwater planarian: an electron-microscopic study with special reference to the formation of the pharyngeal cavity and pharyngeal Lumen. Zoological Science 8:775-784.
-
(1991)
Zoological Science
, vol.8
, pp. 775-784
-
-
Asai, E.1
-
3
-
-
84986435987
-
Mitosis in the intact and regenerating planarian Dugesia mediterranea n.sp. II. Mitotic studies during regeneration, and a possible mechanism of blastema formation
-
Baguñà J. 1976. Mitosis in the intact and regenerating planarian Dugesia mediterranea n.sp. II. Mitotic studies during regeneration, and a possible mechanism of blastema formation. Journal of Experimental Zoology 195:65-80.
-
(1976)
Journal of Experimental Zoology
, vol.195
, pp. 65-80
-
-
Baguñà, J.1
-
4
-
-
84979191749
-
The inhibitive action of the Roentgen rays on regeneration in planarians
-
doi: 10.1002/jez.1400010107
-
Bardeen C, Baetjer F. 1904. The inhibitive action of the Roentgen rays on regeneration in planarians. Journal of Experimental Zoology 1:191-195. doi: 10.1002/jez.1400010107.
-
(1904)
Journal of Experimental Zoology
, vol.1
, pp. 191-195
-
-
Bardeen, C.1
Baetjer, F.2
-
5
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Series B 57:289-300.
-
(1995)
Journal of the Royal Statistical Society Series B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
6
-
-
78650774202
-
A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology
-
doi: 10.1371/journal.pone.0015617
-
Blythe MJ, Kao D, Malla S, Rowsell J, Wilson R, Evans D, Jowett J, Hall A, Lemay V, Lam S, Aboobaker AA. 2010. A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology. PLOS ONE 5:e15617. doi: 10.1371/journal.pone.0015617.
-
(2010)
PLOS ONE
, vol.5
-
-
Blythe, M.J.1
Kao, D.2
Malla, S.3
Rowsell, J.4
Wilson, R.5
Evans, D.6
Jowett, J.7
Hall, A.8
Lemay, V.9
Lam, S.10
Aboobaker, A.A.11
-
7
-
-
77149163345
-
An RbAp48-like gene regulates adult stem cells in planarians
-
doi: 10.1242/jcs.053900
-
Bonuccelli L, Rossi L, Lena A, Scarcelli V, Rainaldi G, Evangelista M, Iacopetti P, Gremigni V, Salvetti A. 2010. An RbAp48-like gene regulates adult stem cells in planarians. Journal of Cell Science 123:690-698. doi: 10.1242/jcs.053900.
-
(2010)
Journal of Cell Science
, vol.123
, pp. 690-698
-
-
Bonuccelli, L.1
Rossi, L.2
Lena, A.3
Scarcelli, V.4
Rainaldi, G.5
Evangelista, M.6
Iacopetti, P.7
Gremigni, V.8
Salvetti, A.9
-
8
-
-
84888437648
-
SILAC proteomics of planarians identifies Ncoa5 as a conserved component of pluripotent stem cells
-
doi: 10.1016/j.celrep.2013.10.035
-
Böser A, Drexler HCA, Reuter H, Schmitz H, Wu G, Schöler HR, Gentile L, Bartscherer K. 2013. SILAC proteomics of planarians identifies Ncoa5 as a conserved component of pluripotent stem cells. Cell Reports 5:1142-1155. doi: 10.1016/j.celrep.2013.10.035.
-
(2013)
Cell Reports
, vol.5
, pp. 1142-1155
-
-
Böser, A.1
Drexler, H.C.A.2
Reuter, H.3
Schmitz, H.4
Wu, G.5
Schöler, H.R.6
Gentile, L.7
Bartscherer, K.8
-
9
-
-
0000716035
-
Planarian pharynx regeneration in regenerating tail fragments monitored with cell-specific monoclonal antibodies
-
doi: 10.1007/s004270050072
-
Bueno D, Espinosa L, Baguñà J, Romero R. 1997. Planarian pharynx regeneration in regenerating tail fragments monitored with cell-specific monoclonal antibodies. Development Genes and Evolution 206:425-434. doi: 10.1007/s004270050072.
-
(1997)
Development Genes and Evolution
, vol.206
, pp. 425-434
-
-
Bueno, D.1
Espinosa, L.2
Baguñà, J.3
Romero, R.4
-
10
-
-
0013814157
-
Mitotic and functional homeostasis: A speculative review
-
Bullough WS. 1965. Mitotic and functional homeostasis: a speculative review. Cancer Research 25:1683-1727.
-
(1965)
Cancer Research
, vol.25
, pp. 1683-1727
-
-
Bullough, W.S.1
-
12
-
-
34347272302
-
Regeneration and maintenance of the planarian midline is regulated by a slit orthologue
-
Cebrià F, Guo T, Jopek J, Newmark PA. 2007. Regeneration and maintenance of the planarian midline is regulated by a slit orthologue. Developmental Biology 307:394-406.
-
(2007)
Developmental Biology
, vol.307
, pp. 394-406
-
-
Cebrià, F.1
Guo, T.2
Jopek, J.3
Newmark, P.A.4
-
13
-
-
0030700298
-
Myocyte differentiation and body wall muscle regeneration in the planarian Girardia tigrina
-
Cebrià F, Vispo M, Newmark P, Bueno D, Romero R. 1997. Myocyte differentiation and body wall muscle regeneration in the planarian Girardia tigrina. Development Genes and Evolution 207:306-316.
-
(1997)
Development Genes and Evolution
, vol.207
, pp. 306-316
-
-
Cebrià, F.1
Vispo, M.2
Newmark, P.3
Bueno, D.4
Romero, R.5
-
14
-
-
0036184236
-
Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4
-
doi: 10.1016/ S1097-2765(02)00459-8
-
Cirillo LA, Lin FR, Cuesta I, Friedman D, Jarnik M, Zaret KS. 2002. Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Molecular Cell 9:279-289. doi: 10.1016/ S1097-2765(02)00459-8.
-
(2002)
Molecular Cell
, vol.9
, pp. 279-289
-
-
Cirillo, L.A.1
Lin, F.R.2
Cuesta, I.3
Friedman, D.4
Jarnik, M.5
Zaret, K.S.6
-
15
-
-
78149372646
-
Genomewide analyses reveal a role for peptide hormones in planarian germline development
-
doi: 10.1371/journal.pbio.1000509
-
Collins JJ, Hou X, Romanova EV, Lambrus BG, Miller CM, Saberi A, Sweedler JV, Newmark PA. 2010. Genomewide analyses reveal a role for peptide hormones in planarian germline development. PLOS Biology 8:e1000509. doi: 10.1371/journal.pbio.1000509.
-
(2010)
PLOS Biology
, vol.8
-
-
Collins, J.J.1
Hou, X.2
Romanova, E.V.3
Lambrus, B.G.4
Miller, C.M.5
Saberi, A.6
Sweedler, J.V.7
Newmark, P.A.8
-
16
-
-
84887981913
-
Genome-wide analysis of the bHLH gene family in planarians identifies factors required for adult neurogenesis and neuronal regeneration
-
doi: 10.1242/dev.098616
-
Cowles MW, Brown DDR, Nisperos SV, Stanley BN, Pearson BJ, Zayas RM. 2013. Genome-wide analysis of the bHLH gene family in planarians identifies factors required for adult neurogenesis and neuronal regeneration. Development 140:4691-4702. doi: 10.1242/dev.098616.
-
(2013)
Development
, vol.140
, pp. 4691-4702
-
-
Cowles, M.W.1
Brown, D.D.R.2
Nisperos, S.V.3
Stanley, B.N.4
Pearson, B.J.5
Zayas, R.M.6
-
17
-
-
84881602357
-
Transcription factors lhx1/5-1 and pitx are required for the maintenance and regeneration of serotonergic neurons in planarians
-
doi: 10.1242/dev.098590
-
Currie KW, Pearson BJ. 2013. Transcription factors lhx1/5-1 and pitx are required for the maintenance and regeneration of serotonergic neurons in planarians. Development 140:3577-3588. doi: 10.1242/dev.098590.
-
(2013)
Development
, vol.140
, pp. 3577-3588
-
-
Currie, K.W.1
Pearson, B.J.2
-
18
-
-
61849119137
-
Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers
-
doi: 10.1101/gr.084582.108
-
Eeckhoute J, Lupien M, Meyer CA, Verzi MP, Shivdasani RA, Liu XS, Brown M. 2009. Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers. Genome Research 19:372-380. doi: 10.1101/gr.084582.108.
-
(2009)
Genome Research
, vol.19
, pp. 372-380
-
-
Eeckhoute, J.1
Lupien, M.2
Meyer, C.A.3
Verzi, M.P.4
Shivdasani, R.A.5
Liu, X.S.6
Brown, M.7
-
19
-
-
51049089115
-
Molecular analysis of stem cells and their descendants during cell turnover and regeneration in the planarian Schmidtea mediterranea
-
doi: 10.1016/j.stem.2008.07.002
-
Eisenhoffer GT, Kang H, Sánchezalvarado A. 2008. Molecular analysis of stem cells and their descendants during cell turnover and regeneration in the planarian Schmidtea mediterranea. Cell Stem Cell 3:327-339. doi: 10.1016/j.stem.2008.07.002.
-
(2008)
Cell Stem Cell
, vol.3
, pp. 327-339
-
-
Eisenhoffer, G.T.1
Kang, H.2
Sánchezalvarado, A.3
-
20
-
-
79955524004
-
EGFR signaling regulates cell proliferation, differentiation and morphogenesis during planarian regeneration and homeostasis
-
doi: 10.1016/j. ydbio.2011.03.023
-
Fraguas S, Barberán S, Cebrià F. 2011. EGFR signaling regulates cell proliferation, differentiation and morphogenesis during planarian regeneration and homeostasis. Developmental Biology 354:87-101. doi: 10.1016/j. ydbio.2011.03.023.
-
(2011)
Developmental Biology
, vol.354
, pp. 87-101
-
-
Fraguas, S.1
Barberán, S.2
Cebrià, F.3
-
21
-
-
12744251650
-
Analysis of forkhead and snail expression reveals epithelialmesenchymal transitions during embryonic and larval development of Nematostella vectensis
-
doi: 10.1016/j.ydbio.2004.08.014
-
Fritzenwanker JH, Saina M, Technau U. 2004. Analysis of forkhead and snail expression reveals epithelialmesenchymal transitions during embryonic and larval development of Nematostella vectensis. Developmental Biology 275:389-402. doi: 10.1016/j.ydbio.2004.08.014.
-
(2004)
Developmental Biology
, vol.275
, pp. 389-402
-
-
Fritzenwanker, J.H.1
Saina, M.2
Technau, U.3
-
22
-
-
0034614379
-
Stem cells: A new lease on life
-
doi: 10.1016/S0092-8674(00)81691-8
-
Fuchs E, Segre J. 2000. Stem cells: a new lease on life. Cell 100:143-155. doi: 10.1016/S0092-8674(00)81691-8.
-
(2000)
Cell
, vol.100
, pp. 143-155
-
-
Fuchs, E.1
Segre, J.2
-
23
-
-
0036468361
-
Regulation of organogenesis by the Caenorhabditis elegans FoxA protein PHA-4
-
doi: 10.1126/science.1065175
-
Gaudet J, Mango SE. 2002. Regulation of organogenesis by the Caenorhabditis elegans FoxA protein PHA-4. Science 295:821-825. doi: 10.1126/science.1065175.
-
(2002)
Science
, vol.295
, pp. 821-825
-
-
Gaudet, J.1
Mango, S.E.2
-
24
-
-
38349179867
-
Beta-catenin defines head versus tail identity during planarian regeneration and homeostasis
-
doi: 10.1126/science.1150029
-
Gurley K, Rink J, Sánchezalvarado A. 2008. Beta-catenin defines head versus tail identity during planarian regeneration and homeostasis. Science 319:323-327. doi: 10.1126/science.1150029.
-
(2008)
Science
, vol.319
, pp. 323-327
-
-
Gurley, K.1
Rink, J.2
Sánchezalvarado, A.3
-
25
-
-
77957316159
-
Expression of secreted Wnt pathway components reveals unexpected complexity of the planarian amputation response
-
doi: 10.1016/j.ydbio.2010.08.007
-
Gurley KA, Elliott SA, Simakov O, Schmidt HA, Holstein TW, Sánchezalvarado A. 2010. Expression of secreted Wnt pathway components reveals unexpected complexity of the planarian amputation response. Developmental Biology 347:24-39. doi: 10.1016/j.ydbio.2010.08.007.
-
(2010)
Developmental Biology
, vol.347
, pp. 24-39
-
-
Gurley, K.A.1
Elliott, S.A.2
Simakov, O.3
Schmidt, H.A.4
Holstein, T.W.5
Sánchezalvarado, A.6
-
26
-
-
80054995024
-
Scale: A chemical approach for fluorescence imaging and reconstruction of transparent mouse brain
-
doi: 10.1038/nn.2928
-
Hama H, Kurokawa H, Kawano H, Ando R, Shimogori T, Noda H, Fukami K, Sakaue-Sawano A, Miyawaki A. 2011. Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain. Nature Neuroscience 14:1481-1488. doi: 10.1038/nn.2928.
-
(2011)
Nature Neuroscience
, vol.14
, pp. 1481-1488
-
-
Hama, H.1
Kurokawa, H.2
Kawano, H.3
Ando, R.4
Shimogori, T.5
Noda, H.6
Fukami, K.7
Sakaue-Sawano, A.8
Miyawaki, A.9
-
27
-
-
0016607261
-
Fine structure studies on the planarian, Dugesia. I. Nature of the "neoblast" and other cell types in noninjured worms
-
doi: 10.1016/S0022-5320(75)90003-9
-
Hay E, Coward S. 1975. Fine structure studies on the planarian, Dugesia. I. Nature of the "neoblast" and other cell types in noninjured worms. Journal of Ultrastructure Research 50:1-21. doi: 10.1016/S0022-5320(75)90003-9.
-
(1975)
Journal of Ultrastructure Research
, vol.50
, pp. 1-21
-
-
Hay, E.1
Coward, S.2
-
28
-
-
74549115234
-
Single-cell gene profiling of planarian stem cells using fluorescent activated cell sorting and its "index sorting" function for stem cell research
-
doi: 10.1111/j.1440-169X.2009.01157.x
-
Hayashi T, Shibata N, Okumura R, Kudome T, Nishimura O, Tarui H, Agata K. 2010. Single-cell gene profiling of planarian stem cells using fluorescent activated cell sorting and its "index sorting" function for stem cell research. Development Growth & Differentiation 52:131-144. doi: 10.1111/j.1440-169X.2009.01157.x.
-
(2010)
Development Growth & Differentiation
, vol.52
, pp. 131-144
-
-
Hayashi, T.1
Shibata, N.2
Okumura, R.3
Kudome, T.4
Nishimura, O.5
Tarui, H.6
Agata, K.7
-
29
-
-
0030828073
-
Mitosisspecific phosphorylation of histone H3 initiates primarily within pericentromeric heterochromatin during G2 and spreads in an ordered fashion coincident with mitotic chromosome condensation
-
doi: 10.1007/s004120050256
-
Hendzel MJ, Wei Y, Mancini MA, Van Hooser A, Ranalli T, Brinkley BR, Bazett-Jones DP, Allis CD. 1997. Mitosisspecific phosphorylation of histone H3 initiates primarily within pericentromeric heterochromatin during G2 and spreads in an ordered fashion coincident with mitotic chromosome condensation. Chromosoma 106:348-360. doi: 10.1007/s004120050256.
-
(1997)
Chromosoma
, vol.106
, pp. 348-360
-
-
Hendzel, M.J.1
Wei, Y.2
Mancini, M.A.3
van Hooser, A.4
Ranalli, T.5
Brinkley, B.R.6
Bazett-Jones, D.P.7
Allis, C.D.8
-
31
-
-
0013286631
-
Electron microscopic observations on the planarian tissues I. A Survey of the pharynx
-
Ishii S. 1962. Electron microscopic observations on the planarian tissues I. A Survey of the pharynx. Fukushima Journal of Medical Science 9-10:51-73.
-
(1962)
Fukushima Journal of Medical Science
, vol.9-10
, pp. 51-73
-
-
Ishii, S.1
-
32
-
-
0034851718
-
Epimorphic regeneration of the distal part of the planarian pharynx
-
doi: 10.1007/s004270000115
-
Ito H, Saito Y, Watanabe K, Orii H. 2001. Epimorphic regeneration of the distal part of the planarian pharynx. Development Genes and Evolution 211:2-9. doi: 10.1007/s004270000115.
-
(2001)
Development Genes and Evolution
, vol.211
, pp. 2-9
-
-
Ito, H.1
Saito, Y.2
Watanabe, K.3
Orii, H.4
-
33
-
-
0345567414
-
Observation on the histological configuration of the pharynx in the planarian, Dugesia gonocephala
-
Kido T. 1964. Observation on the histological configuration of the pharynx in the planarian, Dugesia gonocephala. Ann Rep Noto Mar Lab 4:121-127.
-
(1964)
Ann Rep Noto Mar Lab
, vol.4
, pp. 121-127
-
-
Kido, T.1
-
34
-
-
84874805648
-
In situ hybridization protocol for enhanced detection of gene expression in the planarian Schmidtea mediterranea
-
doi: 10.1186/1471-213X-13-8
-
King RS, Newmark PA. 2013. In situ hybridization protocol for enhanced detection of gene expression in the planarian Schmidtea mediterranea. BMC Developmental Biology 13:1-1. doi: 10.1186/1471-213X-13-8.
-
(2013)
BMC Developmental Biology
, vol.13
, pp. 1
-
-
King, R.S.1
Newmark, P.A.2
-
35
-
-
0033168033
-
The process of pharynx regeneration in planarians
-
doi: 10.1006/dbio.1999.9291
-
Kobayashi C, Watanabe K, Agata K. 1999. The process of pharynx regeneration in planarians. Developmental Biology 211:27-38. doi: 10.1006/dbio.1999.9291.
-
(1999)
Developmental Biology
, vol.211
, pp. 27-38
-
-
Kobayashi, C.1
Watanabe, K.2
Agata, K.3
-
36
-
-
0034707198
-
Planaria FoxA (HNF3) homologue is specifically expressed in the pharynx-forming cells
-
doi: 10.1016/S0378-1119(00)00426-1
-
Koinuma S, Umesono Y, Watanabe K, Agata K. 2000. Planaria FoxA (HNF3) homologue is specifically expressed in the pharynx-forming cells. Gene 259:171-176. doi: 10.1016/S0378-1119(00)00426-1.
-
(2000)
Gene
, vol.259
, pp. 171-176
-
-
Koinuma, S.1
Umesono, Y.2
Watanabe, K.3
Agata, K.4
-
37
-
-
84864376995
-
A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammals
-
doi: 10.1002/stem.1144
-
Labbé RM, Irimia M, Currie KW, Lin A, Zhu SJ, Brown DDR, Ross EJ, Voisin V, Bader GD, Blencowe BJ, Pearson BJ. 2012. A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammals. Stem Cells 30:1734-1745. doi: 10.1002/stem.1144.
-
(2012)
Stem Cells
, vol.30
, pp. 1734-1745
-
-
Labbé, R.M.1
Irimia, M.2
Currie, K.W.3
Lin, A.4
Zhu, S.J.5
Brown, D.D.R.6
Ross, E.J.7
Voisin, V.8
Bader, G.D.9
Blencowe, B.J.10
Pearson, B.J.11
-
38
-
-
0035026187
-
Toward regenerative medicine
-
doi: 10.1016/S1074-7613(01)00123-6
-
Lagasse E, Shizuru JA, Uchida N, Tsukamoto A, Weissman IL. 2001. Toward regenerative medicine. Immunity 14:425-436. doi: 10.1016/S1074-7613(01)00123-6.
-
(2001)
Immunity
, vol.14
, pp. 425-436
-
-
Lagasse, E.1
Shizuru, J.A.2
Uchida, N.3
Tsukamoto, A.4
Weissman, I.L.5
-
39
-
-
80052333516
-
Dlx and sp6-9 control Optic Cup regeneration in a Prototypic Eye
-
doi: 10.1371/journal.pgen.1002226
-
Lapan SW, Reddien PW. 2011. Dlx and sp6-9 control Optic Cup regeneration in a Prototypic Eye. PLOS Genetics 7:e1002226. doi: 10.1371/journal.pgen.1002226.
-
(2011)
PLOS Genetics
, vol.7
-
-
Lapan, S.W.1
Reddien, P.W.2
-
40
-
-
84865798210
-
Transcriptome analysis of the planarian eye identifies ovo as a specific regulator of eye regeneration
-
doi: 10.1016/j.celrep.2012.06.018
-
Lapan SW, Reddien PW. 2012. Transcriptome analysis of the planarian eye identifies ovo as a specific regulator of eye regeneration. Cell Reports 2:294-307. doi: 10.1016/j.celrep.2012.06.018.
-
(2012)
Cell Reports
, vol.2
, pp. 294-307
-
-
Lapan, S.W.1
Reddien, P.W.2
-
41
-
-
20544473735
-
The initiation of liver development is dependent on Foxa transcription factors
-
doi: 10.1038/nature03649
-
Lee CS, Friedman JR, Fulmer JT, Kaestner KH. 2005. The initiation of liver development is dependent on Foxa transcription factors. Nature 435:944-947. doi: 10.1038/nature03649.
-
(2005)
Nature
, vol.435
, pp. 944-947
-
-
Lee, C.S.1
Friedman, J.R.2
Fulmer, J.T.3
Kaestner, K.H.4
-
42
-
-
40849085514
-
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
-
doi: 10.1016/j. cell.2008.01.018
-
Lupien M, Eeckhoute J, Meyer CA, Wang Q, Zhang Y, Li W, Carroll JS, Liu XS, Brown M. 2008. FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 132:958-970. doi: 10.1016/j. cell.2008.01.018.
-
(2008)
Cell
, vol.132
, pp. 958-970
-
-
Lupien, M.1
Eeckhoute, J.2
Meyer, C.A.3
Wang, Q.4
Zhang, Y.5
Li, W.6
Carroll, J.S.7
Liu, X.S.8
Brown, M.9
-
43
-
-
0000406805
-
Observations on the fine structure of pharyngeal muscle in the planarian Dugesia tigrina
-
doi: 10.1083/jcb.18.3.651
-
MacRae E. 1963. Observations on the fine structure of pharyngeal muscle in the planarian Dugesia tigrina. The Journal of Cell Biology 18:651-662. doi: 10.1083/jcb.18.3.651.
-
(1963)
The Journal of Cell Biology
, vol.18
, pp. 651-662
-
-
Macrae, E.1
-
44
-
-
70350623220
-
The molecular basis of organ formation: Insights from the C. elegans foregut
-
doi: 10.1146/annurev.cellbio.24.110707.175411
-
Mango SE. 2009. The molecular basis of organ formation: insights from the C. elegans foregut. Annual Review of Cell and Developmental Biology 25:597-628. doi: 10.1146/annurev.cellbio.24.110707.175411.
-
(2009)
Annual Review of Cell and Developmental Biology
, vol.25
, pp. 597-628
-
-
Mango, S.E.1
-
45
-
-
0028068018
-
The pha-4 gene is required to generate the pharyngeal primordium of Caenorhabditis elegans
-
Mango SE, Lambie EJ, Kimble J. 1994. The pha-4 gene is required to generate the pharyngeal primordium of Caenorhabditis elegans. Development 3019-3031.
-
(1994)
Development
, pp. 3019-3031
-
-
Mango, S.E.1
Lambie, E.J.2
Kimble, J.3
-
46
-
-
79952186731
-
Evolutionary implications of morphogenesis and molecular patterning of the blind gut in the planarian Schmidtea polychroa
-
Martín-Durán JM, Romero R. 2011. Evolutionary implications of morphogenesis and molecular patterning of the blind gut in the planarian Schmidtea polychroa. Developmental Biology 352:164-176.
-
(2011)
Developmental Biology
, vol.352
, pp. 164-176
-
-
Martín-Durán, J.M.1
Romero, R.2
-
47
-
-
77649190516
-
Germ layer specification and axial patterning in the embryonic development of the freshwater planarian Schmidtea polychroa
-
Martín-Durán JM, Amaya E, Romero R. 2010. Germ layer specification and axial patterning in the embryonic development of the freshwater planarian Schmidtea polychroa. Developmental Biology 340:145-158.
-
(2010)
Developmental Biology
, vol.340
, pp. 145-158
-
-
Martín-Durán, J.M.1
Amaya, E.2
Romero, R.3
-
48
-
-
0031010050
-
Regulation of skeletal muscle mass in mice by a new TGF-beta superfamily member
-
doi: 10.1038/387083a0
-
McPherron AC, Lawler AM, Lee SJ. 1997. Regulation of skeletal muscle mass in mice by a new TGF-beta superfamily member. Nature 387:83-90. doi: 10.1038/387083a0.
-
(1997)
Nature
, vol.387
, pp. 83-90
-
-
McPherron, A.C.1
Lawler, A.M.2
Lee, S.J.3
-
49
-
-
0000323431
-
Experimental studies of the regeneration of Planaria maculata
-
Morgan T. 1898. Experimental studies of the regeneration of Planaria maculata. Arch Entw Mech Org 7:364-397.
-
(1898)
Arch Entw Mech Org
, vol.7
, pp. 364-397
-
-
Morgan, T.1
-
50
-
-
0342369613
-
Bromodeoxyuridine specifically labels the regenerative stem cells of planarians
-
doi: 10.1006/dbio.2000.9645
-
Newmark P, Sánchezalvarado A. 2000. Bromodeoxyuridine specifically labels the regenerative stem cells of planarians. Developmental Biology 220:142-153. doi: 10.1006/dbio.2000.9645.
-
(2000)
Developmental Biology
, vol.220
, pp. 142-153
-
-
Newmark, P.1
Sánchezalvarado, A.2
-
51
-
-
21044437930
-
Neural projections in planarian brain revealed by fluorescent dye tracing
-
doi: 10.2108/zsj.22.535
-
Okamoto K, Takeuchi K, Agata K. 2005. Neural projections in planarian brain revealed by fluorescent dye tracing. Zoological Science 22:535-546. doi: 10.2108/zsj.22.535.
-
(2005)
Zoological Science
, vol.22
, pp. 535-546
-
-
Okamoto, K.1
Takeuchi, K.2
Agata, K.3
-
52
-
-
15844403395
-
Distribution of the stem cells (neoblasts) in the planarian Dugesia japonica
-
doi: 10.1007/s00427-004-0460-y
-
Orii H, Sakurai T, Watanabe K. 2005. Distribution of the stem cells (neoblasts) in the planarian Dugesia japonica. Development Genes and Evolution 215:143-157. doi: 10.1007/s00427-004-0460-y.
-
(2005)
Development Genes and Evolution
, vol.215
, pp. 143-157
-
-
Orii, H.1
Sakurai, T.2
Watanabe, K.3
-
53
-
-
34249888736
-
PHA-4/Foxa mediates diet-restriction-induced longevity of C. elegans
-
doi: 10.1038/nature05837
-
Panowski SH, Wolff S, Aguilaniu H, Durieux J, Dillin A. 2007. PHA-4/Foxa mediates diet-restriction-induced longevity of C. elegans. Nature 447:550-555. doi: 10.1038/nature05837.
-
(2007)
Nature
, vol.447
, pp. 550-555
-
-
Panowski, S.H.1
Wolff, S.2
Aguilaniu, H.3
Durieux, J.4
Dillin, A.5
-
54
-
-
59649084941
-
Formaldehyde-based wholemount in situ hybridization method for planarians
-
doi: 10.1002/ dvdy.21849
-
Pearson B, Eisenhoffer G, Gurley K, Rink J, Miller D, Sánchezalvarado A. 2009. Formaldehyde-based wholemount in situ hybridization method for planarians. Developmental Dynamics 238:443-450. doi: 10.1002/ dvdy.21849.
-
(2009)
Developmental Dynamics
, vol.238
, pp. 443-450
-
-
Pearson, B.1
Eisenhoffer, G.2
Gurley, K.3
Rink, J.4
Miller, D.5
Sánchezalvarado, A.6
-
55
-
-
73649143160
-
A planarian p53 homolog regulates proliferation and self-renewal in adult stem cell lineages
-
doi: 10.1242/dev.044297
-
Pearson BJ, Sánchezalvarado A. 2010. A planarian p53 homolog regulates proliferation and self-renewal in adult stem cell lineages. Development 137:213-221. doi: 10.1242/dev.044297.
-
(2010)
Development
, vol.137
, pp. 213-221
-
-
Pearson, B.J.1
Sánchezalvarado, A.2
-
56
-
-
73549084272
-
Cell death and tissue remodeling in planarian regeneration
-
doi: 10.1016/j.ydbio.2009.09.015
-
Pellettieri J, Fitzgerald P, Watanabe S, Mancuso J, Green DR, Sánchezalvarado A. 2010. Cell death and tissue remodeling in planarian regeneration. Developmental Biology 338:76-85. doi: 10.1016/j.ydbio.2009.09.015.
-
(2010)
Developmental Biology
, vol.338
, pp. 76-85
-
-
Pellettieri, J.1
Fitzgerald, P.2
Watanabe, S.3
Mancuso, J.4
Green, D.R.5
Sánchezalvarado, A.6
-
57
-
-
44449113934
-
Cell turnover and adult tissue homeostasis: From humans to planarians
-
doi: 10.1146/annurev.genet.41.110306.130244
-
Pellettieri J, Sánchezalvarado A. 2007. Cell turnover and adult tissue homeostasis: from humans to planarians. Annual Review of Genetics 41:83-105. doi: 10.1146/annurev.genet.41.110306.130244.
-
(2007)
Annual Review of Genetics
, vol.41
, pp. 83-105
-
-
Pellettieri, J.1
Sánchezalvarado, A.2
-
58
-
-
38349150677
-
Smed-betacatenin-1 is required for anteroposterior blastema polarity in planarian regeneration
-
doi: 10.1126/science.1149943
-
Petersen C, Reddien P. 2008. Smed-betacatenin-1 is required for anteroposterior blastema polarity in planarian regeneration. Science 319:327-330. doi: 10.1126/science.1149943.
-
(2008)
Science
, vol.319
, pp. 327-330
-
-
Petersen, C.1
Reddien, P.2
-
60
-
-
77956873456
-
Advances in understanding tissue regenerative capacity and mechanisms in animals
-
doi: 10.1038/nrg2879
-
Poss KD. 2010. Advances in understanding tissue regenerative capacity and mechanisms in animals. Nature Review Genetics 11:710-721. doi: 10.1038/nrg2879.
-
(2010)
Nature Review Genetics
, vol.11
, pp. 710-721
-
-
Poss, K.D.1
-
62
-
-
79959343927
-
Constitutive gene expression and the specification of tissue identity in adult planarian biology
-
doi: 10.1016/j.tig.2011.04.004
-
Reddien PW. 2011. Constitutive gene expression and the specification of tissue identity in adult planarian biology. Trends in Genetics 27:277-285. doi: 10.1016/j.tig.2011.04.004.
-
(2011)
Trends In Genetics
, vol.27
, pp. 277-285
-
-
Reddien, P.W.1
-
63
-
-
84873741792
-
Specialized progenitors and regeneration
-
doi: 10.1242/dev.080499
-
Reddien PW. 2013. Specialized progenitors and regeneration. Development 140:951-957. doi: 10.1242/dev.080499.
-
(2013)
Development
, vol.140
, pp. 951-957
-
-
Reddien, P.W.1
-
64
-
-
17844395204
-
Identification of genes needed for regeneration, stem cell function, and tissue homeostasis by systematic gene perturbation in planaria
-
doi: 10.1016/j.devcel.2005.02.014
-
Reddien PW, Bermange AL, Murfitt KJ, Jennings JR, Sánchezalvarado A. 2005a. Identification of genes needed for regeneration, stem cell function, and tissue homeostasis by systematic gene perturbation in planaria. Developmental Cell 8:635-649. doi: 10.1016/j.devcel.2005.02.014.
-
(2005)
Developmental Cell
, vol.8
, pp. 635-649
-
-
Reddien, P.W.1
Bermange, A.L.2
Murfitt, K.J.3
Jennings, J.R.4
Sánchezalvarado, A.5
-
65
-
-
28144464878
-
SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells
-
doi: 10.1126/science.1116110
-
Reddien PW, Oviedo NJ, Jennings JR, Jenkin JC, Sánchezalvarado A. 2005b. SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells. Science 310:1327-1330. doi: 10.1126/science.1116110.
-
(2005)
Science
, vol.310
, pp. 1327-1330
-
-
Reddien, P.W.1
Oviedo, N.J.2
Jennings, J.R.3
Jenkin, J.C.4
Sánchezalvarado, A.5
-
66
-
-
84872946712
-
Stem cell systems and regeneration in planaria
-
doi: 10.1007/s00427-012-0426-4
-
Rink JC. 2012. Stem cell systems and regeneration in planaria. Development Genes and Evolution 223:67-84. doi: 10.1007/s00427-012-0426-4.
-
(2012)
Development Genes and Evolution
, vol.223
, pp. 67-84
-
-
Rink, J.C.1
-
67
-
-
71549119821
-
Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia
-
doi: 10.1126/science.1178712
-
Rink JC, Gurley KA, Elliott SA, Sánchezalvarado A. 2009. Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia. Science 326:1406-1410. doi: 10.1126/science.1178712.
-
(2009)
Science
, vol.326
, pp. 1406-1410
-
-
Rink, J.C.1
Gurley, K.A.2
Elliott, S.A.3
Sánchezalvarado, A.4
-
68
-
-
80051504285
-
The maintenance and regeneration of the planarian excretory system are regulated by EGFR signaling
-
doi: 10.1242/dev.066852
-
Rink JC, Vu HTK, Sánchezalvarado A. 2011. The maintenance and regeneration of the planarian excretory system are regulated by EGFR signaling. Development 138:3769-3780. doi: 10.1242/dev.066852.
-
(2011)
Development
, vol.138
, pp. 3769-3780
-
-
Rink, J.C.1
Vu, H.T.K.2
Sánchezalvarado, A.3
-
69
-
-
38549143656
-
SmedGD: The Schmidtea mediterranea genome database
-
doi: 10.1093/nar/gkm684
-
Robb S, Ross E, Sánchezalvarado A. 2008. SmedGD: the Schmidtea mediterranea genome database. Nucleic Acids Research 36:D599-D606. doi: 10.1093/nar/gkm684.
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Robb, S.1
Ross, E.2
Sánchezalvarado, A.3
-
70
-
-
0015292803
-
Induction d'un pharynx supplémentaire par des incisions répétées chez la planaire Dugesia lugubris 0
-
Schilt PJ. 1972. Induction d'un pharynx supplémentaire par des incisions répétées chez la planaire Dugesia lugubris 0. Schmidt. Journal of Embryology and Experimental Morphology 27:15-24.
-
(1972)
Schmidt. Journal of Embryology and Experimental Morphology
, vol.27
, pp. 15-24
-
-
Schilt, P.J.1
-
71
-
-
80053087577
-
A regulatory program for excretory system regeneration in planarians
-
doi: 10.1242/dev.068098
-
Scimone ML, Srivastava M, Bell GW, Reddien PW. 2011. A regulatory program for excretory system regeneration in planarians. Development 138:4387-4398. doi: 10.1242/dev.068098.
-
(2011)
Development
, vol.138
, pp. 4387-4398
-
-
Scimone, M.L.1
Srivastava, M.2
Bell, G.W.3
Reddien, P.W.4
-
72
-
-
84866863378
-
Skin shedding and tissue regeneration in African spiny mice (Acomys)
-
doi: 10.1038/nature11499
-
Seifert AW, Kiama SG, Seifert MG, Goheen JR, Palmer TM, Maden M. 2012. Skin shedding and tissue regeneration in African spiny mice (Acomys). Nature 489:561-565. doi: 10.1038/nature11499.
-
(2012)
Nature
, vol.489
, pp. 561-565
-
-
Seifert, A.W.1
Kiama, S.G.2
Seifert, M.G.3
Goheen, J.R.4
Palmer, T.M.5
Maden, M.6
-
73
-
-
84859128368
-
Comprehensive gene expression analyses in pluripotent stem cells of a planarian, Dugesia japonica
-
doi: 10.1387/ijdb.113434ns
-
Shibata N, Hayashi T, Fukumura R, Fujii J, Kudome-Takamatsu T, Nishimura O, Sano S, Son F, Suzuki N, Araki R, Abe M, Agata K. 2012. Comprehensive gene expression analyses in pluripotent stem cells of a planarian, Dugesia japonica. International Journal of Developmental Biology 56:93-102. doi: 10.1387/ijdb.113434ns.
-
(2012)
International Journal of Developmental Biology
, vol.56
, pp. 93-102
-
-
Shibata, N.1
Hayashi, T.2
Fukumura, R.3
Fujii, J.4
Kudome-Takamatsu, T.5
Nishimura, O.6
Sano, S.7
Son, F.8
Suzuki, N.9
Araki, R.10
Abe, M.11
Agata, K.12
-
74
-
-
14544274561
-
Hematopoietic stem and progenitor cells: Clinical and preclinical regeneration of the hematolymphoid system
-
doi: 10.1146/annurev. med.54.101601.152334
-
Shizuru JA, Negrin RS, Weissman IL. 2005. Hematopoietic stem and progenitor cells: clinical and preclinical regeneration of the hematolymphoid system. Annual Review of Medicine 56:509-538. doi: 10.1146/annurev. med.54.101601.152334.
-
(2005)
Annual Review of Medicine
, vol.56
, pp. 509-538
-
-
Shizuru, J.A.1
Negrin, R.S.2
Weissman, I.L.3
-
75
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
doi: 10.2202/1544-6115.1027
-
Smyth GK. 2004. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 3:1544-6115. doi: 10.2202/1544-6115.1027.
-
(2004)
Statistical Applications In Genetics and Molecular Biology
, vol.3
, pp. 1544-6115
-
-
Smyth, G.K.1
-
76
-
-
84892741340
-
The CCR4-not complex mediates deadenylation and degradation of stem cell mRNAs and promotes planarian stem cell differentiation
-
doi: 10.1371/journal.pgen.1004003
-
Solana J, Gamberi C, Mihaylova Y, Grosswendt S, Chen C, Lasko P, Rajewsky N, Aboobaker AA. 2013. The CCR4-not complex mediates deadenylation and degradation of stem cell mRNAs and promotes planarian stem cell differentiation. PLOS Genetics 9:e1004003. doi: 10.1371/journal.pgen.1004003.
-
(2013)
PLOS Genetics
, vol.9
-
-
Solana, J.1
Gamberi, C.2
Mihaylova, Y.3
Grosswendt, S.4
Chen, C.5
Lasko, P.6
Rajewsky, N.7
Aboobaker, A.A.8
-
77
-
-
84859998218
-
TORC1 is required to balance cell proliferation and cell death in planarians
-
doi: 10.1016/j.ydbio.2012.03.010
-
Tu KC, Pearson BJ, Sánchezalvarado A. 2012. TORC1 is required to balance cell proliferation and cell death in planarians. Developmental Biology 365:458-469. doi: 10.1016/j.ydbio.2012.03.010.
-
(2012)
Developmental Biology
, vol.365
, pp. 458-469
-
-
Tu, K.C.1
Pearson, B.J.2
Sánchezalvarado, A.3
-
78
-
-
84881481504
-
The molecular logic for planarian regeneration along the anterior-posterior axis
-
doi: 10.1038/nature12359
-
Umesono Y, Tasaki J, Nishimura Y, Hrouda M, Kawaguchi E, Yazawa S, Nishimura O, Hosoda K, Inoue T, Agata K. 2013. The molecular logic for planarian regeneration along the anterior-posterior axis. Nature 500:73-76. doi: 10.1038/nature12359.
-
(2013)
Nature
, vol.500
, pp. 73-76
-
-
Umesono, Y.1
Tasaki, J.2
Nishimura, Y.3
Hrouda, M.4
Kawaguchi, E.5
Yazawa, S.6
Nishimura, O.7
Hosoda, K.8
Inoue, T.9
Agata, K.10
-
79
-
-
35548959494
-
Genetic suppressors of Caenorhabditis elegans pha-4/FoxA identify the predicted AAA helicase ruvb-1/RuvB
-
doi: 10.1534/genetics.107.076653
-
Updike DL, Mango SE. 2007. Genetic suppressors of Caenorhabditis elegans pha-4/FoxA identify the predicted AAA helicase ruvb-1/RuvB. Genetics 177:819-833. doi: 10.1534/genetics.107.076653.
-
(2007)
Genetics
, vol.177
, pp. 819-833
-
-
Updike, D.L.1
Mango, S.E.2
-
80
-
-
84857856280
-
Genetic regulators of a pluripotent adult stem cell system in planarians identified by RNAi and clonal analysis
-
doi: 10.1016/j.stem.2012.01.016
-
Wagner DE, Ho JJ, Reddien PW. 2012. Genetic regulators of a pluripotent adult stem cell system in planarians identified by RNAi and clonal analysis. Cell Stem Cell 10:299-311. doi: 10.1016/j.stem.2012.01.016.
-
(2012)
Cell Stem Cell
, vol.10
, pp. 299-311
-
-
Wagner, D.E.1
Ho, J.J.2
Reddien, P.W.3
-
81
-
-
79955985703
-
Clonogenic neoblasts are pluripotent adult stem cells that underlie planarian regeneration
-
doi: 10.1126/science.1203983
-
Wagner DE, Wang IE, Reddien PW. 2011. Clonogenic neoblasts are pluripotent adult stem cells that underlie planarian regeneration. Science 332:811-816. doi: 10.1126/science.1203983.
-
(2011)
Science
, vol.332
, pp. 811-816
-
-
Wagner, D.E.1
Wang, I.E.2
Reddien, P.W.3
-
82
-
-
84860503852
-
A molecular wound response program associated with regeneration initiation in planarians
-
doi: 10.1101/ gad.187377.112
-
Wenemoser D, Lapan SW, Wilkinson AW, Bell GW, Reddien PW. 2012. A molecular wound response program associated with regeneration initiation in planarians. Genes & Development 26:988-1002. doi: 10.1101/ gad.187377.112.
-
(2012)
Genes & Development
, vol.26
, pp. 988-1002
-
-
Wenemoser, D.1
Lapan, S.W.2
Wilkinson, A.W.3
Bell, G.W.4
Reddien, P.W.5
-
83
-
-
77955274843
-
Planarian regeneration involves distinct stem cell responses to wounds and tissue absence
-
doi: 10.1016/j.ydbio.2010.06.017
-
Wenemoser D, Reddien PW. 2010. Planarian regeneration involves distinct stem cell responses to wounds and tissue absence. Developmental Biology 344:979-991. doi: 10.1016/j.ydbio.2010.06.017.
-
(2010)
Developmental Biology
, vol.344
, pp. 979-991
-
-
Wenemoser, D.1
Reddien, P.W.2
-
84
-
-
7044271749
-
Some chemotropic and feeding reactions of Planaria maculata
-
doi: 10.2307/1536425
-
Wulzen R. 1917. Some chemotropic and feeding reactions of Planaria maculata. Biological Bulletin 33:67-69. doi: 10.2307/1536425.
-
(1917)
Biological Bulletin
, vol.33
, pp. 67-69
-
-
Wulzen, R.1
-
85
-
-
84878662838
-
Heterochromatin protein 1 promotes self-renewal and triggers regenerative proliferation in adult stem cells
-
doi: 10.1083/jcb.201207172
-
Zeng A, Li Y-Q, Wang C, Han X-S, Li G, Wang J-Y, Li D-S, Qin Y-W, Shi Y, Brewer G, Jing Q. 2013. Heterochromatin protein 1 promotes self-renewal and triggers regenerative proliferation in adult stem cells. The Journal of Cell Biology 201:409-425. doi: 10.1083/jcb.201207172.
-
(2013)
The Journal of Cell Biology
, vol.201
, pp. 409-425
-
-
Zeng, A.1
Li, Y.-Q.2
Wang, C.3
Han, X.-S.4
Li, G.5
Wang, J.-Y.6
Li, D.-S.7
Qin, Y.-W.8
Shi, Y.9
Brewer, G.10
Jing, Q.11
-
86
-
-
84871707114
-
The Retinoblastoma pathway regulates stem cell proliferation in freshwater planarians
-
doi: 10.1016/j.ydbio.2012.10.025
-
Zhu SJ, Pearson BJ. 2013. The Retinoblastoma pathway regulates stem cell proliferation in freshwater planarians. Developmental Biology 373:442-452. doi: 10.1016/j.ydbio.2012.10.025.
-
(2013)
Developmental Biology
, vol.373
, pp. 442-452
-
-
Zhu, S.J.1
Pearson, B.J.2
-
87
-
-
17744419848
-
Investigation of the inhibition of the regeneration of the planarian pharynx. I. Evidence of an auto-inhibiting factor found in the regenerating pharynx
-
Ziller-Sengel C. 1967a. [Investigation of the inhibition of the regeneration of the planarian pharynx. I. Evidence of an auto-inhibiting factor found in the regenerating pharynx]. Journal of Embryology and Experimental Morphology 18:91-105.
-
(1967)
Journal of Embryology and Experimental Morphology
, vol.18
, pp. 91-105
-
-
Ziller-Sengel, C.1
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88
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0014119098
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Investigation of the inhibition of the regeneration of the planarian pharynx. II. Variations of the amount of the inhibitor dependent on the species and the phase of regeneration
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Ziller-Sengel C. 1967b. [Investigation of the inhibition of the regeneration of the planarian pharynx. II. Variations of the amount of the inhibitor dependent on the species and the phase of regeneration]. Journal of Embryology and Experimental Morphology 18:107-119.
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(1967)
Journal of Embryology and Experimental Morphology
, vol.18
, pp. 107-119
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Ziller-Sengel, C.1
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