메뉴 건너뛰기




Volumn 46, Issue 5, 2014, Pages 516-521

TDP2 protects transcription from abortive topoisomerase activity and is required for normal neural function

(17)  Gómez Herreros, Fernando a   Schuurs Hoeijmakers, Janneke H M b,c   McCormack, Mark d   Greally, Marie T e   Rulten, Stuart a   Romero Granados, Rocío f   Counihan, Timothy J g   Chaila, Elijah h   Conroy, Judith i   Ennis, Sean i   Delanty, Norman d,h   Cortés Ledesma, Felipe f   De Brouwer, Arjan P M b,c   Cavalleri, Gianpiero L d   El Khamisy, Sherif F j,k   De Vries, Bert B A b,c   Caldecott, Keith W a  


Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING); PHOSPHODIESTERASE; TYROSYL DNA PHOSPHODIESTERASE 2; UNCLASSIFIED DRUG; ESTERASE; TYROSYL DNA PHOSPHODIESTERASE 2 ENZYME;

EID: 84899521838     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.2929     Document Type: Article
Times cited : (115)

References (40)
  • 1
    • 70349673605 scopus 로고    scopus 로고
    • A human 5?-tyrosyl DNA phosphodiesterase that repairs topoisomerase-mediated DNA damage
    • Cortes Ledesma, F., El-Khamisy, S.F., Zuma, M.C., Osborn, K. & Caldecott, K.W. A human 5?-tyrosyl DNA phosphodiesterase that repairs topoisomerase-mediated DNA damage. Nature 461, 674-678 (2009).
    • (2009) Nature , vol.461 , pp. 674-678
    • Cortes Ledesma, F.1    El-Khamisy, S.F.2    Zuma, M.C.3    Osborn, K.4    Caldecott, K.W.5
  • 2
    • 67749137351 scopus 로고    scopus 로고
    • Functional annotations improve the predictive score of human disease-related mutations in proteins
    • Calabrese, R., Capriotti, E., Fariselli, P., Martelli, P.L. & Casadio, R. Functional annotations improve the predictive score of human disease-related mutations in proteins. Hum. Mutat. 30, 1237-1244 (2009).
    • (2009) Hum. Mutat , vol.30 , pp. 1237-1244
    • Calabrese, R.1    Capriotti, E.2    Fariselli, P.3    Martelli, P.L.4    Casadio, R.5
  • 3
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei, I.A. et al. A method and server for predicting damaging missense mutations. Nat. Methods 7, 248-249 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 248-249
    • Adzhubei, I.A.1
  • 4
    • 0034801365 scopus 로고    scopus 로고
    • Sequence analysis identifies TTRAP, a protein that associates with CD40 and TNF receptor-associated factors, as a member of a superfamily of divalent cation-dependent phosphodiesterases
    • Rodrigues-Lima, F., Josephs, M., Katan, M. & Cassinat, B. Sequence analysis identifies TTRAP, a protein that associates with CD40 and TNF receptor-associated factors, as a member of a superfamily of divalent cation-dependent phosphodiesterases. Biochem. Biophys. Res. Commun. 285, 1274-1279 (2001).
    • (2001) Biochem. Biophys. Res. Commun , vol.285 , pp. 1274-1279
    • Rodrigues-Lima, F.1    Josephs, M.2    Katan, M.3    Cassinat, B.4
  • 5
    • 0034674568 scopus 로고    scopus 로고
    • TTRAP, a novel protein that associates with CD40, tumor necrosis factor (TNF) receptor-75 and TNF receptor-associated factors (TRAFs), and that inhibits nuclear factor-?B activation
    • Pype, S. et al. TTRAP, a novel protein that associates with CD40, tumor necrosis factor (TNF) receptor-75 and TNF receptor-associated factors (TRAFs), and that inhibits nuclear factor-?B activation. J. Biol. Chem. 275, 18586-18593 (2000).
    • (2000) J. Biol. Chem , vol.275 , pp. 18586-18593
    • Pype, S.1
  • 6
    • 84875992493 scopus 로고    scopus 로고
    • TDP2-dependent non-homologous end-joining protects against topoisomerase II-induced DNA breaks and genome instability in cells and in vivo
    • Gómez-Herreros, F. et al. TDP2-dependent non-homologous end-joining protects against topoisomerase II-induced DNA breaks and genome instability in cells and in vivo. PLoS Genet. 9, e1003226 (2013).
    • (2013) PLoS Genet , vol.9
    • Gómez-Herreros, F.1
  • 7
    • 84866952385 scopus 로고    scopus 로고
    • TDP2 promotes repair of topoisomerase I-mediated DNA damage in the absence of TDP1
    • Zeng, Z. et al. TDP2 promotes repair of topoisomerase I-mediated DNA damage in the absence of TDP1. Nucleic Acids Res. 40, 8371-8380 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. 8371-8380
    • Zeng, Z.1
  • 8
    • 64649105115 scopus 로고    scopus 로고
    • DNA topoisomerase II and its growing repertoire of biological functions
    • Nitiss, J.L. DNA topoisomerase II and its growing repertoire of biological functions. Nat. Rev. Cancer 9, 327-337 (2009).
    • (2009) Nat. Rev. Cancer , vol.9 , pp. 327-337
    • Nitiss, J.L.1
  • 9
    • 81855198087 scopus 로고    scopus 로고
    • All tangled up: How cells direct, manage and exploit topoisomerase function
    • Vos, S.M., Tretter, E.M., Schmidt, B.H. & Berger, J.M. All tangled up: how cells direct, manage and exploit topoisomerase function. Nat. Rev. Mol. Cell Biol. 12, 827-841 (2011).
    • (2011) Nat. Rev. Mol. Cell Biol , vol.12 , pp. 827-841
    • Vos, S.M.1    Tretter, E.M.2    Schmidt, B.H.3    Berger, J.M.4
  • 10
    • 64649090292 scopus 로고    scopus 로고
    • Targeting DNA topoisomerase II in cancer chemotherapy
    • Nitiss, J.L. Targeting DNA topoisomerase II in cancer chemotherapy. Nat. Rev. Cancer 9, 338-350 (2009).
    • (2009) Nat. Rev. Cancer , vol.9 , pp. 338-350
    • Nitiss, J.L.1
  • 11
    • 77954187741 scopus 로고    scopus 로고
    • DNA topoisomerases and their poisoning by anticancer and antibacterial drugs
    • Pommier, Y., Leo, E., Zhang, H. & Marchand, C. DNA topoisomerases and their poisoning by anticancer and antibacterial drugs. Chem. Biol. 17, 421-433 (2010).
    • (2010) Chem. Biol , vol.17 , pp. 421-433
    • Pommier, Y.1    Leo, E.2    Zhang, H.3    Marchand, C.4
  • 12
    • 84870831603 scopus 로고    scopus 로고
    • Mechanism of repair of 5?-topoisomerase II-DNA adducts by mammalian tyrosyl-DNA phosphodiesterase 2
    • Schellenberg, M.J. et al. Mechanism of repair of 5?-topoisomerase II-DNA adducts by mammalian tyrosyl-DNA phosphodiesterase 2. Nat. Struct. Mol. Biol. 19, 1363-1371 (2012).
    • (2012) Nat. Struct. Mol. Biol , vol.19 , pp. 1363-1371
    • Schellenberg, M.J.1
  • 13
    • 84870837982 scopus 로고    scopus 로고
    • Structural basis for recognition of 5?-phosphotyrosine adducts by Tdp2
    • Shi, K. et al. Structural basis for recognition of 5?-phosphotyrosine adducts by Tdp2. Nat. Struct. Mol. Biol. 19, 1372-1377 (2012).
    • (2012) Nat. Struct. Mol. Biol , vol.19 , pp. 1372-1377
    • Shi, K.1
  • 14
    • 38349010574 scopus 로고    scopus 로고
    • Ttrap is an essential modulator of Smad3-dependent Nodal signaling during zebrafish gastrulation and left-right axis determination
    • Esguerra, C.V. et al. Ttrap is an essential modulator of Smad3-dependent Nodal signaling during zebrafish gastrulation and left-right axis determination. Development 134, 4381-4393 (2007).
    • (2007) Development , vol.134 , pp. 4381-4393
    • Esguerra, C.V.1
  • 15
    • 18644386254 scopus 로고    scopus 로고
    • Mutation of TDP1, encoding a topoisomerase I-dependent DNA damage repair enzyme, in spinocerebellar ataxia with axonal neuropathy
    • Takashima, H. et al. Mutation of TDP1, encoding a topoisomerase I-dependent DNA damage repair enzyme, in spinocerebellar ataxia with axonal neuropathy. Nat. Genet. 32, 267-272 (2002).
    • (2002) Nat. Genet , vol.32 , pp. 267-272
    • Takashima, H.1
  • 16
    • 36248984333 scopus 로고    scopus 로고
    • TDP1 facilitates chromosomal single-strand break repair in neurons and is neuroprotective in vivo
    • Katyal, S. et al. TDP1 facilitates chromosomal single-strand break repair in neurons and is neuroprotective in vivo. EMBO J. 26, 4720-4731 (2007).
    • (2007) EMBO J , vol.26 , pp. 4720-4731
    • Katyal, S.1
  • 17
    • 36249016854 scopus 로고    scopus 로고
    • Spinocerebellar ataxia with axonal neuropathy: Consequence of a Tdp1 recessive neomorphic mutation?
    • Hirano, R. et al. Spinocerebellar ataxia with axonal neuropathy: consequence of a Tdp1 recessive neomorphic mutation? EMBO J. 26, 4732-4743 (2007).
    • (2007) EMBO J , vol.26 , pp. 4732-4743
    • Hirano, R.1
  • 18
    • 68149161604 scopus 로고    scopus 로고
    • The genesis of cerebellar interneurons and the prevention of neural DNA damage require XRCC1
    • Lee, Y. et al. The genesis of cerebellar interneurons and the prevention of neural DNA damage require XRCC1. Nat. Neurosci. 12, 973-980 (2009).
    • (2009) Nat. Neurosci , vol.12 , pp. 973-980
    • Lee, Y.1
  • 19
    • 84883740518 scopus 로고    scopus 로고
    • Topoisomerases facilitate transcription of long genes linked to autism
    • King, I.F. et al. Topoisomerases facilitate transcription of long genes linked to autism. Nature 501, 58-62 (2013).
    • (2013) Nature , vol.501 , pp. 58-62
    • King, I.F.1
  • 20
    • 33750301347 scopus 로고    scopus 로고
    • Role of topoisomerase II? in the expression of developmentally regulated genes
    • Lyu, Y.L. et al. Role of topoisomerase II? in the expression of developmentally regulated genes. Mol. Cell. Biol. 26, 7929-7941 (2006).
    • (2006) Mol. Cell. Biol , vol.26 , pp. 7929-7941
    • Lyu, Y.L.1
  • 21
    • 33745255099 scopus 로고    scopus 로고
    • A topoisomerase II?-mediated dsDNA break required for regulated transcription
    • Ju, B.-G. et al. A topoisomerase II?-mediated dsDNA break required for regulated transcription. Science 312, 1798-1802 (2006).
    • (2006) Science , vol.312 , pp. 1798-1802
    • Ju, B.-G.1
  • 22
    • 84885131112 scopus 로고    scopus 로고
    • Gene regulation and priming by topoisomerase II? in embryonic stem cells
    • Thakurela, S. et al. Gene regulation and priming by topoisomerase II? in embryonic stem cells. Nat. Commun. 4, 2478 (2013).
    • (2013) Nat. Commun , vol.4 , pp. 2478
    • Thakurela, S.1
  • 23
    • 84859987415 scopus 로고    scopus 로고
    • Target genes of topoisomerase II regulate neuronal survival and are defined by their chromatin state
    • Tiwari, V.K. et al. Target genes of topoisomerase II? regulate neuronal survival and are defined by their chromatin state. Proc. Natl. Acad. Sci. USA 109, E934-E943 (2012).
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109
    • Tiwari, V.K.1
  • 24
    • 77955069195 scopus 로고    scopus 로고
    • Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements
    • Haffner, M.C. et al. Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements. Nat. Genet. 42, 668-675 (2010).
    • (2010) Nat. Genet , vol.42 , pp. 668-675
    • Haffner, M.C.1
  • 25
    • 0029618270 scopus 로고
    • GABA and glutamate depolarize cortical progenitor cells and inhibit DNA synthesis
    • LoTurco, J.J., Owens, D.F., Heath, M.J., Davis, M.B. & Kriegstein, A.R. GABA and glutamate depolarize cortical progenitor cells and inhibit DNA synthesis. Neuron 15, 1287-1298 (1995).
    • (1995) Neuron , vol.15 , pp. 1287-1298
    • Loturco, J.J.1    Owens, D.F.2    Heath, M.J.3    Davis, M.B.4    Kriegstein, A.R.5
  • 26
    • 24644492005 scopus 로고    scopus 로고
    • Nonsynaptic GABA signaling in postnatal subventricular zone controls proliferation of GFAP-expressing progenitors
    • Liu, X., Wang, Q., Haydar, T.F. & Bordey, A. Nonsynaptic GABA signaling in postnatal subventricular zone controls proliferation of GFAP-expressing progenitors. Nat. Neurosci. 8, 1179-1187 (2005).
    • (2005) Nat. Neurosci , vol.8 , pp. 1179-1187
    • Liu, X.1    Wang, Q.2    Haydar, T.F.3    Bordey, A.4
  • 27
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar, R., Domrachev, M. & Lash, A.E. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30, 207-210 (2002).
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 28
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A tool set for whole-genome association and population-based linkage analyses
    • Purcell, S. et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559-575 (2007).
    • (2007) Am. J. Hum. Genet , vol.81 , pp. 559-575
    • Purcell, S.1
  • 29
    • 78049416608 scopus 로고    scopus 로고
    • The characterization of twenty sequenced human genomes
    • Pelak, K. et al. The characterization of twenty sequenced human genomes. PLoS Genet. 6, e1001111 (2010).
    • (2010) PLoS Genet , vol.6
    • Pelak, K.1
  • 30
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 31
    • 79960142070 scopus 로고    scopus 로고
    • SVA: Software for annotating and visualizing sequenced human genomes
    • Ge, D. et al. SVA: software for annotating and visualizing sequenced human genomes. Bioinformatics 27, 1998-2000 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 1998-2000
    • Ge, D.1
  • 32
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J.T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
    • (2011) Nat. Biotechnol , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 33
    • 84861400043 scopus 로고    scopus 로고
    • Cn.MOPS: Mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate
    • Klambauer, G. et al. cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate. Nucleic Acids Res. 40, e69 (2012).
    • (2012) Nucleic Acids Res , vol.40
    • Klambauer, G.1
  • 34
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen, S. & Skaletsky, H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132, 365-386 (2000).
    • (2000) Methods Mol. Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 35
    • 33745657499 scopus 로고    scopus 로고
    • Comparison of 12 reference genes for normalization of gene expression levels in Epstein-Barr virus-transformed lymphoblastoid cell lines and fibroblasts
    • de Brouwer, A.P.M., van Bokhoven, H. & Kremer, H. Comparison of 12 reference genes for normalization of gene expression levels in Epstein-Barr virus-transformed lymphoblastoid cell lines and fibroblasts. Mol. Diagn. Ther. 10, 197-204 (2006).
    • (2006) Mol. Diagn. Ther , vol.10 , pp. 197-204
    • De Brouwer, A.P.M.1    Van Bokhoven, H.2    Kremer, H.3
  • 36
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(CT) method
    • Livak, K.J. & Schmittgen, T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(CT) method. Methods 25, 402-408 (2001).
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 37
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29, e45 (2001).
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 38
    • 0028959309 scopus 로고
    • An efficient method for routine Epstein-Barr virus immortalization of human B lymphocytes
    • Wall, F.E., Henkel, R.D., Stern, M.P., Jenson, H.B. & Moyer, M.P. An efficient method for routine Epstein-Barr virus immortalization of human B lymphocytes. In Vitro Cell. Dev. Biol. Anim. 31, 156-159 (1995).
    • (1995) Vitro Cell. Dev. Biol. Anim , vol.31 , pp. 156-159
    • Wall, F.E.1    Henkel, R.D.2    Stern, M.P.3    Jenson, H.B.4    Moyer, M.P.5
  • 39
    • 84872222890 scopus 로고    scopus 로고
    • Isolation and culture of post-natal mouse cerebellar granule neuron progenitor cells and neurons
    • Lee, H.-Y., Greene, L.A., Mason, C.A. & Manzini, M.C. Isolation and culture of post-natal mouse cerebellar granule neuron progenitor cells and neurons. J. Vis. Exp. 23, e990 (2009).
    • (2009) J. Vis. Exp , vol.23
    • Lee, H.-Y.1    Greene, L.A.2    Mason, C.A.3    Manzini, M.C.4
  • 40
    • 84875043665 scopus 로고    scopus 로고
    • Generation of assays and antibodies to facilitate the study of human 5?-tyrosyl DNA phosphodiesterase
    • Thomson, G. et al. Generation of assays and antibodies to facilitate the study of human 5?-tyrosyl DNA phosphodiesterase. Anal. Biochem. 436, 145-150 (2013).
    • Anal. Biochem , vol.436 , pp. 145-150
    • Thomson, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.