-
1
-
-
78049402859
-
Molecular signals of epigenetic states
-
R. Bonasio, S. Tu, and D. Reinberg Molecular signals of epigenetic states Science 330 2010 612 616
-
(2010)
Science
, vol.330
, pp. 612-616
-
-
Bonasio, R.1
Tu, S.2
Reinberg, D.3
-
2
-
-
17744364327
-
Gardening the genome: DNA methylation in Arabidopsis thaliana
-
S.W. Chan, I.R. Henderson, and S.E. Jacobsen Gardening the genome: DNA methylation in Arabidopsis thaliana Nat. Rev. Genet. 6 2005 351 360
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 351-360
-
-
Chan, S.W.1
Henderson, I.R.2
Jacobsen, S.E.3
-
3
-
-
39749196238
-
Cellular programming of plant gene imprinting
-
J.H. Huh, M.J. Bauer, T.F. Hsieh, and R.L. Fischer Cellular programming of plant gene imprinting Cell 132 2008 735 744
-
(2008)
Cell
, vol.132
, pp. 735-744
-
-
Huh, J.H.1
Bauer, M.J.2
Hsieh, T.F.3
Fischer, R.L.4
-
4
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
J.A. Law, and S.E. Jacobsen Establishing, maintaining and modifying DNA methylation patterns in plants and animals Nat. Rev. Genet. 11 2010 204 220
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
5
-
-
77956095231
-
Active DNA demethylation: Many roads lead to Rome
-
S.C. Wu, and Y. Zhang Active DNA demethylation: many roads lead to Rome Nat. Rev. Mol. Cell Biol. 11 2010 607 620
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 607-620
-
-
Wu, S.C.1
Zhang, Y.2
-
6
-
-
79955538247
-
Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
-
J.U. Guo, Y. Su, C. Zhong, G.L. Ming, and H. Song Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain Cell 145 2011 423 434
-
(2011)
Cell
, vol.145
, pp. 423-434
-
-
Guo, J.U.1
Su, Y.2
Zhong, C.3
Ming, G.L.4
Song, H.5
-
7
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
Y.F. He, B.Z. Li, Z. Li, P. Liu, Y. Wang, Q. Tang, J. Ding, Y. Jia, Z. Chen, L. Li, Y. Sun, X. Li, Q. Dai, C.X. Song, K. Zhang, C. He, and G.L. Xu Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA Science 333 2011 1303 1307
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.F.1
Li, B.Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
Sun, Y.11
Li, X.12
Dai, Q.13
Song, C.X.14
Zhang, K.15
He, C.16
Xu, G.L.17
-
8
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
-
S. Ito, A.C. D'Alessio, O.V. Taranova, K. Hong, L.C. Sowers, and Y. Zhang Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification Nature 466 2010 1129 1133
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
9
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
S. Ito, L. Shen, Q. Dai, S.C. Wu, L.B. Collins, J.A. Swenberg, C. He, and Y. Zhang Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine Science 333 2011 1300 1303
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
10
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
M. Tahiliani, K.P. Koh, Y. Shen, W.A. Pastor, H. Bandukwala, Y. Brudno, S. Agarwal, L.M. Iyer, D.R. Liu, L. Aravind, and A. Rao Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1 Science 324 2009 930 935
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
Rao, A.11
-
11
-
-
79955948324
-
Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells
-
Y. Xu, F. Wu, L. Tan, L. Kong, L. Xiong, J. Deng, A.J. Barbera, L. Zheng, H. Zhang, S. Huang, J. Min, T. Nicholson, T. Chen, G. Xu, Y. Shi, K. Zhang, and Y.G. Shi Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells Mol. Cell 42 2011 451 464
-
(2011)
Mol. Cell
, vol.42
, pp. 451-464
-
-
Xu, Y.1
Wu, F.2
Tan, L.3
Kong, L.4
Xiong, L.5
Deng, J.6
Barbera, A.J.7
Zheng, L.8
Zhang, H.9
Huang, S.10
Min, J.11
Nicholson, T.12
Chen, T.13
Xu, G.14
Shi, Y.15
Zhang, K.16
Shi, Y.G.17
-
12
-
-
79956302047
-
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity
-
K. Williams, J. Christensen, M.T. Pedersen, J.V. Johansen, P.A. Cloos, J. Rappsilber, and K. Helin TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity Nature 473 2011 343 348
-
(2011)
Nature
, vol.473
, pp. 343-348
-
-
Williams, K.1
Christensen, J.2
Pedersen, M.T.3
Johansen, J.V.4
Cloos, P.A.5
Rappsilber, J.6
Helin, K.7
-
13
-
-
80053917872
-
Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: Potential implications for active demethylation of CpG sites
-
A. Maiti, and A.C. Drohat Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites J. Biol. Chem. 286 2011 35334 35338
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 35334-35338
-
-
Maiti, A.1
Drohat, A.C.2
-
15
-
-
33746807366
-
Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation
-
F. Agius, A. Kapoor, and J.K. Zhu Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation Proc. Natl. Acad. Sci. 103 2006 11796 11801
-
(2006)
Proc. Natl. Acad. Sci.
, vol.103
, pp. 11796-11801
-
-
Agius, F.1
Kapoor, A.2
Zhu, J.K.3
-
16
-
-
32044470027
-
DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation
-
M. Gehring, J.H. Huh, T.F. Hsieh, J. Penterman, Y. Choi, J.J. Harada, R.B. Goldberg, and R.L. Fischer DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation Cell 124 2006 495 506
-
(2006)
Cell
, vol.124
, pp. 495-506
-
-
Gehring, M.1
Huh, J.H.2
Hsieh, T.F.3
Penterman, J.4
Choi, Y.5
Harada, J.J.6
Goldberg, R.B.7
Fischer, R.L.8
-
17
-
-
33646473818
-
DEMETER and REPRESSOR of SILENCING 1 encode 5-methylcytosine DNA glycosylases
-
T. Morales-Ruiz, A.P. Ortega-Galisteo, M.I. Ponferrada-Marin, M.I. Martinez-Macias, R.R. Ariza, and T. Roldan-Arjona DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases Proc. Natl. Acad. Sci. 103 2006 6853 6858
-
(2006)
Proc. Natl. Acad. Sci.
, vol.103
, pp. 6853-6858
-
-
Morales-Ruiz, T.1
Ortega-Galisteo, A.P.2
Ponferrada-Marin, M.I.3
Martinez-Macias, M.I.4
Ariza, R.R.5
Roldan-Arjona, T.6
-
18
-
-
46249125864
-
Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks
-
A.P. Ortega-Galisteo, T. Morales-Ruiz, R.R. Ariza, and T. Roldan-Arjona Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks Plant Mol. Biol. 67 2008 671 681
-
(2008)
Plant Mol. Biol.
, vol.67
, pp. 671-681
-
-
Ortega-Galisteo, A.P.1
Morales-Ruiz, T.2
Ariza, R.R.3
Roldan-Arjona, T.4
-
19
-
-
34249853277
-
DNA demethylation in the Arabidopsis genome
-
J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, and R.L. Fischer DNA demethylation in the Arabidopsis genome Proc. Natl. Acad. Sci. 104 2007 6752 6757
-
(2007)
Proc. Natl. Acad. Sci.
, vol.104
, pp. 6752-6757
-
-
Penterman, J.1
Zilberman, D.2
Huh, J.H.3
Ballinger, T.4
Henikoff, S.5
Fischer, R.L.6
-
20
-
-
0037067658
-
DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis
-
Y. Choi, M. Gehring, L. Johnson, M. Hannon, J.J. Harada, R.B. Goldberg, S.E. Jacobsen, and R.L. Fischer DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis Cell 110 2002 33 42
-
(2002)
Cell
, vol.110
, pp. 33-42
-
-
Choi, Y.1
Gehring, M.2
Johnson, L.3
Hannon, M.4
Harada, J.J.5
Goldberg, R.B.6
Jacobsen, S.E.7
Fischer, R.L.8
-
21
-
-
78650592376
-
Domain structure of the DEMETER 5-methylcytosine DNA glycosylase
-
Y.G. Mok, R. Uzawa, J. Lee, G.M. Weiner, B.F. Eichman, R.L. Fischer, and J.H. Huh Domain structure of the DEMETER 5-methylcytosine DNA glycosylase Proc. Natl. Acad. Sci. 107 2010 19225 19230
-
(2010)
Proc. Natl. Acad. Sci.
, vol.107
, pp. 19225-19230
-
-
Mok, Y.G.1
Uzawa, R.2
Lee, J.3
Weiner, G.M.4
Eichman, B.F.5
Fischer, R.L.6
Huh, J.H.7
-
22
-
-
80052933429
-
DNA demethylation dynamics
-
N. Bhutani, D.M. Burns, and H.M. Blau DNA demethylation dynamics Cell 146 2011 866 872
-
(2011)
Cell
, vol.146
, pp. 866-872
-
-
Bhutani, N.1
Burns, D.M.2
Blau, H.M.3
-
23
-
-
0035111895
-
Recent progress in the biology, chemistry and structural biology of DNA glycosylases
-
O.D. Scharer, and J. Jiricny Recent progress in the biology, chemistry and structural biology of DNA glycosylases Bioessays 23 2001 270 281
-
(2001)
Bioessays
, vol.23
, pp. 270-281
-
-
Scharer, O.D.1
Jiricny, J.2
-
24
-
-
67949118893
-
ROS1 5-methylcytosine DNA glycosylase is a slow-turnover catalyst that initiates DNA demethylation in a distributive fashion
-
M.I. Ponferrada-Marin, T. Roldan-Arjona, and R.R. Ariza ROS1 5-methylcytosine DNA glycosylase is a slow-turnover catalyst that initiates DNA demethylation in a distributive fashion Nucleic Acids Res. 37 2009 4264 4274
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4264-4274
-
-
Ponferrada-Marin, M.I.1
Roldan-Arjona, T.2
Ariza, R.R.3
-
25
-
-
0029800969
-
Substrate specificity of Escherichia coli MutY protein
-
N.V. Bulychev, C.V. Varaprasad, G. Dorman, J.H. Miller, M. Eisenberg, A.P. Grollman, and F. Johnson Substrate specificity of Escherichia coli MutY protein Biochemistry 35 1996 13147 13156
-
(1996)
Biochemistry
, vol.35
, pp. 13147-13156
-
-
Bulychev, N.V.1
Varaprasad, C.V.2
Dorman, G.3
Miller, J.H.4
Eisenberg, M.5
Grollman, A.P.6
Johnson, F.7
-
26
-
-
0027366974
-
Substrate specificity of the Escherichia coli endonuclease III: Excision of thymine- and cytosine-derived lesions in DNA produced by radiation-generated free radicals
-
M. Dizdaroglu, J. Laval, and S. Boiteux Substrate specificity of the Escherichia coli endonuclease III: excision of thymine- and cytosine-derived lesions in DNA produced by radiation-generated free radicals Biochemistry 32 1993 12105 12111
-
(1993)
Biochemistry
, vol.32
, pp. 12105-12111
-
-
Dizdaroglu, M.1
Laval, J.2
Boiteux, S.3
-
27
-
-
84865165385
-
AID enzymatic activity is inversely proportional to the size of cytosine C5 orbital cloud
-
G. Rangam, K.M. Schmitz, A.J. Cobb, and S.K. Petersen-Mahrt AID enzymatic activity is inversely proportional to the size of cytosine C5 orbital cloud PLoS One 7 2012 e43279
-
(2012)
PLoS One
, vol.7
, pp. 43279
-
-
Rangam, G.1
Schmitz, K.M.2
Cobb, A.J.3
Petersen-Mahrt, S.K.4
-
28
-
-
84859387765
-
Heterologous expression and purification of Arabidopsis thaliana VIM1 protein: In vitro evidence for its inability to recognize hydroxymethylcytosine, a rare base in Arabidopsis DNA
-
Q. Yao, C.X. Song, C. He, D. Kumaran, and J.J. Dunn Heterologous expression and purification of Arabidopsis thaliana VIM1 protein: in vitro evidence for its inability to recognize hydroxymethylcytosine, a rare base in Arabidopsis DNA Protein Expr. Purif. 83 2012 104 111
-
(2012)
Protein Expr. Purif.
, vol.83
, pp. 104-111
-
-
Yao, Q.1
Song, C.X.2
He, C.3
Kumaran, D.4
Dunn, J.J.5
-
29
-
-
67649510355
-
Oxygenase catalyzed 5-methylcytosine hydroxylation
-
C. Loenarz, and C.J. Schofield Oxygenase catalyzed 5-methylcytosine hydroxylation Chem. Biol. 16 2009 580 583
-
(2009)
Chem. Biol.
, vol.16
, pp. 580-583
-
-
Loenarz, C.1
Schofield, C.J.2
-
31
-
-
84890048526
-
Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins
-
M.L. Maeder, J.F. Angstman, M.E. Richardson, S.J. Linder, V.M. Cascio, S.Q. Tsai, Q.H. Ho, J.D. Sander, D. Reyon, B.E. Bernstein, J.F. Costello, M.F. Wilkinson, and J.K. Joung Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins Nat. Biotechnol. 31 2013 1137 1142
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1137-1142
-
-
Maeder, M.L.1
Angstman, J.F.2
Richardson, M.E.3
Linder, S.J.4
Cascio, V.M.5
Tsai, S.Q.6
Ho, Q.H.7
Sander, J.D.8
Reyon, D.9
Bernstein, B.E.10
Costello, J.F.11
Wilkinson, M.F.12
Joung, J.K.13
|