-
1
-
-
79955016400
-
Plant organelle proteomics: Collaborating for optimal cell function
-
2010.1002/mas.20301
-
Agrawal GK, Bourguignon J, Rolland N, Ephritikhine G, Ferro M, Jaquinod M, Alexiou KG, Chardot T, Chakraborty N, Jolivet P, Doonan JH, Rakwal R (2011) Plant organelle proteomics: collaborating for optimal cell function. Mass Spectrum Rev. doi:2010.1002/mas.20301
-
(2011)
Mass Spectrum Rev.
-
-
Agrawal, G.K.1
Bourguignon, J.2
Rolland, N.3
Ephritikhine, G.4
Ferro, M.5
Jaquinod, M.6
Alexiou, K.G.7
Chardot, T.8
Chakraborty, N.9
Jolivet, P.10
Doonan, J.H.11
Rakwal, R.12
-
2
-
-
34648816506
-
Physiological and protein profiles alternation of germinating rice seedlings exposed to acute cadmium toxicity
-
Ahsan N, Lee SH, Lee DG, Lee H, Lee SW, Bahk JD, Lee BH (2007) Physiological and protein profiles alternation of germinating rice seedlings exposed to acute cadmium toxicity. C R Biol 330:735-746
-
(2007)
C R Biol
, vol.330
, pp. 735-746
-
-
Ahsan, N.1
Lee, S.H.2
Lee, D.G.3
Lee, H.4
Lee, S.W.5
Bahk, J.D.6
Lee, B.H.7
-
3
-
-
33846186721
-
Thiol-peptide level and proteomic changes in response to cadmium toxicity in Oryza sativa L. roots
-
Aina R, Labra M, Fumagalli P, Vannini C, Marsoni M, Cucchi U, Bracale M, Sgorbati S, Citterio S (2007) Thiol-peptide level and proteomic changes in response to cadmium toxicity in Oryza sativa L. roots. Environ Exp Bot 59:381-392
-
(2007)
Environ Exp Bot
, vol.59
, pp. 381-392
-
-
Aina, R.1
Labra, M.2
Fumagalli, P.3
Vannini, C.4
Marsoni, M.5
Cucchi, U.6
Bracale, M.7
Sgorbati, S.8
Citterio, S.9
-
4
-
-
60449097009
-
On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: A root proteomic study
-
Aloui A, Recorbet G, Gollotte A, Robert F, Valot B, Gianinazzi-Pearson V, Aschi-Smiti S, Dumas-Gaudot E (2009) On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: a root proteomic study. Proteomics 9:420-433
-
(2009)
Proteomics
, vol.9
, pp. 420-433
-
-
Aloui, A.1
Recorbet, G.2
Gollotte, A.3
Robert, F.4
Valot, B.5
Gianinazzi-Pearson, V.6
Aschi-Smiti, S.7
Dumas-Gaudot, E.8
-
5
-
-
66149160358
-
Comprehensive analysis of the Brassica juncea root proteome in response to cadmium exposure by complementary proteomic approaches
-
Alvarez S, Berla BM, Sheffield J, Cahoon RE, Jez JM, Hicks LM (2009) Comprehensive analysis of the Brassica juncea root proteome in response to cadmium exposure by complementary proteomic approaches. Proteomics 9:2419-2431
-
(2009)
Proteomics
, vol.9
, pp. 2419-2431
-
-
Alvarez, S.1
Berla, B.M.2
Sheffield, J.3
Cahoon, R.E.4
Jez, J.M.5
Hicks, L.M.6
-
6
-
-
75949116834
-
Gene expression analysis, proteomics, and network discovery
-
Baginsky S, Hennig L, Zimmermann P, Gruissem W (2010) Gene expression analysis, proteomics, and network discovery. Plant Physiol 152:402-410
-
(2010)
Plant Physiol
, vol.152
, pp. 402-410
-
-
Baginsky, S.1
Hennig, L.2
Zimmermann, P.3
Gruissem, W.4
-
7
-
-
77957888285
-
Comparative proteomic analysis of Typha angustifolia leaf under chromium, cadmium and lead stress
-
Bah AM, Sun HY, Chen F, Zhou J, Dai HX, Zhang GP, Wu FB (2010) Comparative proteomic analysis of Typha angustifolia leaf under chromium, cadmium and lead stress. J Hazard Mater 184:191-203
-
(2010)
J Hazard Mater
, vol.184
, pp. 191-203
-
-
Bah, A.M.1
Sun, H.Y.2
Chen, F.3
Zhou, J.4
Dai, H.X.5
Zhang, G.P.6
Wu, F.B.7
-
8
-
-
0345270396
-
Metabolomic analysis of the consequences of cadmium exposure in Silene cucubalus cell cultures via H-1 NMR spectroscopy and chemometrics
-
Bailey NJC, Oven M, Holmes E, Nicholson JK, Zenk MH (2003) Metabolomic analysis of the consequences of cadmium exposure in Silene cucubalus cell cultures via H-1 NMR spectroscopy and chemometrics. Phytochemistry 62:851-858
-
(2003)
Phytochemistry
, vol.62
, pp. 851-858
-
-
Bailey, N.J.C.1
Oven, M.2
Holmes, E.3
Nicholson, J.K.4
Zenk, M.H.5
-
10
-
-
1642564514
-
Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri
-
Becher M, Talke IN, Krall L, Kramer U (2004) Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri. Plant J 37:251-268
-
(2004)
Plant J
, vol.37
, pp. 251-268
-
-
Becher, M.1
Talke, I.N.2
Krall, L.3
Kramer, U.4
-
11
-
-
34547110110
-
Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis
-
Benschop JJ, Mohammed S, O'Flaherty M, Heck AJR, Slijper M, Menke FLH (2007) Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. Mol Cell Proteomics 6:1198-1214
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 1198-1214
-
-
Benschop, J.J.1
Mohammed, S.2
O'Flaherty, M.3
Heck, A.J.R.4
Slijper, M.5
Menke, F.L.H.6
-
12
-
-
0037352627
-
Transcript levels of AtMRPs after cadmium treatment: Induction of AtMRP3
-
Bovet L, Eggmann T, Meylan-Bettex M, Polier J, Kammer P, Marin E, Feller U, Martinoia E (2003) Transcript levels of AtMRPs after cadmium treatment: induction of AtMRP3. Plant Cell Environ 26:371-381
-
(2003)
Plant Cell Environ
, vol.26
, pp. 371-381
-
-
Bovet, L.1
Eggmann, T.2
Meylan-Bettex, M.3
Polier, J.4
Kammer, P.5
Marin, E.6
Feller, U.7
Martinoia, E.8
-
13
-
-
85193163754
-
Extracting transcriptional regulatory modules from a large microarray compendium using a graph-based approach: Application to the response of Arabidopsis thaliana under stress conditions
-
Boyer F, Combes F, Bourguignon J, Vandenbrouck Y (2009) Extracting transcriptional regulatory modules from a large microarray compendium using a graph-based approach: application to the response of Arabidopsis thaliana under stress conditions. TIC Signal Process Proc Ser 48:23-27
-
(2009)
TIC Signal Process Proc ser
, vol.48
, pp. 23-27
-
-
Boyer, F.1
Combes, F.2
Bourguignon, J.3
Vandenbrouck, Y.4
-
14
-
-
66149174897
-
Web-queryable large-scale data sets for hypothesis generation in plant biology
-
Brady SM, Provart NJ (2009) Web-queryable large-scale data sets for hypothesis generation in plant biology. Plant Cell 21:1034-1051
-
(2009)
Plant Cell
, vol.21
, pp. 1034-1051
-
-
Brady, S.M.1
Provart, N.J.2
-
15
-
-
15744385479
-
The vegetative vacuole proteorne of Arabidopsis thaliana reveals predicted and unexpected proteins
-
Carter C, Pan SQ, Jan ZH, Avila EL, Girke T, Raikhel NV (2004) The vegetative vacuole proteorne of Arabidopsis thaliana reveals predicted and unexpected proteins. Plant Cell 16:3285-3303
-
(2004)
Plant Cell
, vol.16
, pp. 3285-3303
-
-
Carter, C.1
Pan, S.Q.2
Jan, Z.H.3
Avila, E.L.4
Girke, T.5
Raikhel, N.V.6
-
16
-
-
79958280290
-
Data standards for Omics data: The basis of data sharing and reuse
-
Chervitz SA, Deutsch EW, Field D, Parkinson H, Quackenbush J, Rocca-Serra P, Sansone SA, Stoeckert CJ Jr, Taylor CF, Taylor R, Ball CA (2011) Data standards for Omics data: the basis of data sharing and reuse. Methods Mol Biol 719:31-69
-
(2011)
Methods Mol Biol
, vol.719
, pp. 31-69
-
-
Chervitz, S.A.1
Deutsch, E.W.2
Field, D.3
Parkinson, H.4
Quackenbush, J.5
Rocca-Serra, P.6
Sansone, S.A.7
Stoeckert, C.J.8
Taylor, C.F.9
Taylor, R.10
Ball, C.A.11
-
17
-
-
33751011307
-
Toxic metal accumulation, responses to exposure and mechanisms of tolerance in plants
-
Clemens S (2006) Toxic metal accumulation, responses to exposure and mechanisms of tolerance in plants. Biochimie 88:1707-1719
-
(2006)
Biochimie
, vol.88
, pp. 1707-1719
-
-
Clemens, S.1
-
18
-
-
0034025143
-
Phytochelatin biosynthesis and function in heavy-metal detoxification
-
Cobbett CS (2000) Phytochelatin biosynthesis and function in heavy-metal detoxification. Curr Opin Plant Biol 3:211-216
-
(2000)
Curr Opin Plant Biol
, vol.3
, pp. 211-216
-
-
Cobbett, C.S.1
-
19
-
-
0037002169
-
Phytochelatins and metallothioneins: Roles in heavy metal detoxification and homeostasis
-
Cobbett C, Goldsbrough P (2002) Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. Annu Rev Plant Biol 53:159-182
-
(2002)
Annu Rev Plant Biol
, vol.53
, pp. 159-182
-
-
Cobbett, C.1
Goldsbrough, P.2
-
20
-
-
38049048700
-
Vitamin e is essential for the tolerance of Arabidopsis thaliana to metal-induced oxidative stress
-
Collin VC, Eymery F, Genty B, Rey P, Havaux M (2008) Vitamin E is essential for the tolerance of Arabidopsis thaliana to metal-induced oxidative stress. Plant Cell Environ 31:244-257
-
(2008)
Plant Cell Environ
, vol.31
, pp. 244-257
-
-
Collin, V.C.1
Eymery, F.2
Genty, B.3
Rey, P.4
Havaux, M.5
-
21
-
-
34250612252
-
A major quantitative trait locus for cadmium tolerance in Arabidopsis halleri colocalizes with HMA4, a gene encoding a heavy metal ATPase
-
Courbot M, Willems G, Motte P, Arvidsson S, Roosens N, Saumitou-Laprade P, Verbruggen N (2007) A major quantitative trait locus for cadmium tolerance in Arabidopsis halleri colocalizes with HMA4, a gene encoding a heavy metal ATPase. Plant Physiol 144:1052-1065
-
(2007)
Plant Physiol
, vol.144
, pp. 1052-1065
-
-
Courbot, M.1
Willems, G.2
Motte, P.3
Arvidsson, S.4
Roosens, N.5
Saumitou-Laprade, P.6
Verbruggen, N.7
-
22
-
-
67149116887
-
Understanding the regulation of aspartate metabolism using a model based on measured kinetic parameters
-
Article number
-
Curien G, Bastlen O, Robert-Genthon M, Cornish-Bowden A, Cardenas ML, Dumas R (2009) Understanding the regulation of aspartate metabolism using a model based on measured kinetic parameters. Mol Syst Biol 5: Article number 271. doi:210.1038/msb.2009.1029
-
(2009)
Mol Syst Biol
, vol.5
-
-
Curien, G.1
Bastlen, O.2
Robert-Genthon, M.3
Cornish-Bowden, A.4
Cardenas, M.L.5
Dumas, R.6
-
23
-
-
53549095177
-
How plants cope with cadmium: Staking all on metabolism and gene expression
-
DalCorso G, Farinati S, Maistri S, Furini A (2008) How plants cope with cadmium: staking all on metabolism and gene expression. J Integr Plant Biol 50:1268-1280
-
(2008)
J Integr Plant Biol
, vol.50
, pp. 1268-1280
-
-
Dalcorso, G.1
Farinati, S.2
Maistri, S.3
Furini, A.4
-
24
-
-
12844278044
-
The oxidative environment and protein damage
-
Davies MJ (2005) The oxidative environment and protein damage. Biochim Biophys Acta 1703:93-109
-
(2005)
Biochim Biophys Acta
, vol.1703
, pp. 93-109
-
-
Davies, M.J.1
-
25
-
-
33751249603
-
New insights into the regulation of phytochelatin biosynthesis in A. thaliana cells from metabolite profiling analyses
-
Ducruix C, Junot C, Fievet JB, Villiers F, Ezan E, Bourguignon J (2006) New insights into the regulation of phytochelatin biosynthesis in A. thaliana cells from metabolite profiling analyses. Biochimie 88:1733-1742
-
(2006)
Biochimie
, vol.88
, pp. 1733-1742
-
-
Ducruix, C.1
Junot, C.2
Fievet, J.B.3
Villiers, F.4
Ezan, E.5
Bourguignon, J.6
-
26
-
-
39649122630
-
Metabolomic investigation of the response of the model plant Arabidopsis thaliana to cadmium exposure: Evaluation of data pretreatment methods for further statistical analyses
-
Ducruix C, Vailhen D, Werner E, Fievet JB, Bourguignon J, Tabet JC, Ezan E, Junot C (2008) Metabolomic investigation of the response of the model plant Arabidopsis thaliana to cadmium exposure: evaluation of data pretreatment methods for further statistical analyses. Chemo Intell Lab Syst 91:67-77
-
(2008)
Chemo Intell Lab Syst
, vol.91
, pp. 67-77
-
-
Ducruix, C.1
Vailhen, D.2
Werner, E.3
Fievet, J.B.4
Bourguignon, J.5
Tabet, J.C.6
Ezan, E.7
Junot, C.8
-
27
-
-
76649103714
-
Acute metal stress in Populus tremula x P. alba (717-1B4 genotype): Leaf and cambial proteome changes induced by cadmium(2+)
-
Durand TC, Sergeant K, Planchon S, Carpin S, Label P, Morabito D, Hausman JF, Renaut J (2010) Acute metal stress in Populus tremula x P. alba (717-1B4 genotype): leaf and cambial proteome changes induced by cadmium(2+). Proteomics 10:349-368
-
(2010)
Proteomics
, vol.10
, pp. 349-368
-
-
Durand, T.C.1
Sergeant, K.2
Planchon, S.3
Carpin, S.4
Label, P.5
Morabito, D.6
Hausman, J.F.7
Renaut, J.8
-
28
-
-
50649093595
-
The arabidopsis putative seleniumbinding protein family: Expression study and characterization of SBP1 as a potential new player in cadmium detoxification processes
-
Dutilleul C, Jourdain A, Bourguignon J, Hugouvieux V (2008) The Arabidopsis putative seleniumbinding protein family: expression study and characterization of SBP1 as a potential new player in cadmium detoxification processes. Plant Physiol 147:239-251
-
(2008)
Plant Physiol
, vol.147
, pp. 239-251
-
-
Dutilleul, C.1
Jourdain, A.2
Bourguignon, J.3
Hugouvieux, V.4
-
29
-
-
2442565733
-
Responses induced by high concentration of cadmium in Phragmites australis roots
-
Ederli L, Reale L, Ferranti F, Pasqualini S (2004) Responses induced by high concentration of cadmium in Phragmites australis roots. Physiol Plant 121:66-74
-
(2004)
Physiol Plant
, vol.121
, pp. 66-74
-
-
Ederli, L.1
Reale, L.2
Ferranti, F.3
Pasqualini, S.4
-
30
-
-
0034192572
-
Plant glutathione S-transferases: Enzymes with multiple functions in sickness and in health
-
Edwards R, Dixon DP, Walbot V (2000) Plant glutathione S-transferases: enzymes with multiple functions in sickness and in health. Trends Plant Sci 5:193-198
-
(2000)
Trends Plant Sci
, vol.5
, pp. 193-198
-
-
Edwards, R.1
Dixon, D.P.2
Walbot, V.3
-
31
-
-
33745459298
-
Identification of a vacuolar sucrose transporter in barley and Arabidopsis mesophyll cells by a tonoplast proteomic approach
-
Endler A, Meyer S, Schelbert S, Schneider T, Weschke W, Peters SW, Keller F, Baginsky S, Martinoia E, Schmidt UG (2006) Identification of a vacuolar sucrose transporter in barley and Arabidopsis mesophyll cells by a tonoplast proteomic approach. Plant Physiol 141:196-207
-
(2006)
Plant Physiol
, vol.141
, pp. 196-207
-
-
Endler, A.1
Meyer, S.2
Schelbert, S.3
Schneider, T.4
Weschke, W.5
Peters, S.W.6
Keller, F.7
Baginsky, S.8
Martinoia, E.9
Schmidt, U.G.10
-
32
-
-
60349118495
-
In vivo phosphorylation sites of barley tonoplast proteins identified by a phosphoproteomic approach
-
Endler A, Reiland S, Gerrits B, Schmidt UG, Baginsky S, Martinoia E (2009) In vivo phosphorylation sites of barley tonoplast proteins identified by a phosphoproteomic approach. Proteomics 9:310-321
-
(2009)
Proteomics
, vol.9
, pp. 310-321
-
-
Endler, A.1
Reiland, S.2
Gerrits, B.3
Schmidt, U.G.4
Baginsky, S.5
Martinoia, E.6
-
33
-
-
66749097182
-
Does the different proteomic profile found in apical and basal leaves of Spinach reveal a strategy of this plant toward cadmium pollution response?
-
Fagioni M, Zolla L (2009) Does the different proteomic profile found in apical and basal leaves of Spinach reveal a strategy of this plant toward cadmium pollution response? J Proteome Res 8:2519-2529
-
(2009)
J Proteome Res
, vol.8
, pp. 2519-2529
-
-
Fagioni, M.1
Zolla, L.2
-
34
-
-
60849110605
-
Proteomic analysis of multiprotein complexes in the thylakoid membrane upon cadmium treatment
-
Fagioni M, Damici GM, Timperio AM, Zolla L (2009) Proteomic analysis of multiprotein complexes in the thylakoid membrane upon cadmium treatment. J Proteome Res 8:310-326
-
(2009)
J Proteome Res
, vol.8
, pp. 310-326
-
-
Fagioni, M.1
Damici, G.M.2
Timperio, A.M.3
Zolla, L.4
-
35
-
-
0033757963
-
Metabolite profiling for plant functional genomics
-
Fiehn O, Kopka J, Dormann P, Altmann T, Trethewey RN, Willmitzer L (2000) Metabolite profiling for plant functional genomics. Nat Biotechnol 18:1157-1161
-
(2000)
Nat Biotechnol
, vol.18
, pp. 1157-1161
-
-
Fiehn, O.1
Kopka, J.2
Dormann, P.3
Altmann, T.4
Trethewey, R.N.5
Willmitzer, L.6
-
36
-
-
70549112091
-
Integrated omics approaches in plant systems biology
-
Fukushima A, Kusano M, Redestig H, Arita M, Saito K (2009) Integrated omics approaches in plant systems biology. Curr Opin Chem Biol 13:532-538
-
(2009)
Curr Opin Chem Biol
, vol.13
, pp. 532-538
-
-
Fukushima, A.1
Kusano, M.2
Redestig, H.3
Arita, M.4
Saito, K.5
-
37
-
-
33751311571
-
Growth and protein profile changes in Lepidium sativum L. plantlets exposed to cadmium
-
Gianazza E, Wait R, Sozzi A, Regondi S, Saco D, Labrac M, Agradi E (2007) Growth and protein profile changes in Lepidium sativum L. plantlets exposed to cadmium. Environ Exp Bot 59:179-187
-
(2007)
Environ Exp Bot
, vol.59
, pp. 179-187
-
-
Gianazza, E.1
Wait, R.2
Sozzi, A.3
Regondi, S.4
Saco, D.5
Labrac, M.6
Agradi, E.7
-
38
-
-
0037370292
-
Chemometric discrimination of unfractionated plant extracts analyzed by electrospray mass spectrometry
-
Goodacre R, York EV, Heald JK, Scott IM (2003) Chemometric discrimination of unfractionated plant extracts analyzed by electrospray mass spectrometry. Phytochemistry 62:859-863
-
(2003)
Phytochemistry
, vol.62
, pp. 859-863
-
-
Goodacre, R.1
York, E.V.2
Heald, J.K.3
Scott, I.M.4
-
39
-
-
32544436982
-
Glucosinolate metabolism and its control
-
Grubb CD, Abel S (2006) Glucosinolate metabolism and its control. Trends Plant Sci 11:89-100
-
(2006)
Trends Plant Sci
, vol.11
, pp. 89-100
-
-
Grubb, C.D.1
Abel, S.2
-
40
-
-
0034858234
-
High resolution two dimensional electrophoresis separation of proteins from metal-stressed rice (Oryza sativa L.) leaves: Drastic reductions/fragmentation of ribulose-1,5-bisphosphate carboxylase/oxygenase and induction of stress-related proteins
-
Hajduch M, Rakwal R, Agrawal GK, Yonekura M, Pretova A (2001) High resolution two dimensional electrophoresis separation of proteins from metal-stressed rice (Oryza sativa L.) leaves: drastic reductions/fragmentation of ribulose-1,5-bisphosphate carboxylase/oxygenase and induction of stress-related proteins. Electrophoresis 22:2824-2831
-
(2001)
Electrophoresis
, vol.22
, pp. 2824-2831
-
-
Hajduch, M.1
Rakwal, R.2
Agrawal, G.K.3
Yonekura, M.4
Pretova, A.5
-
41
-
-
33745218882
-
Biology and biochemistry of glucosinolates
-
Halkier BA, Gershenzon J (2006) Biology and biochemistry of glucosinolates. Annu Rev Plant Biol 57:303-333
-
(2006)
Annu Rev Plant Biol
, vol.57
, pp. 303-333
-
-
Halkier, B.A.1
Gershenzon, J.2
-
42
-
-
43749100069
-
Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4
-
(15 May 2008); Received 20 December 2007; Accepted 28 February 2008; Published online 20 April 2008
-
Hanikenne M, Talke IN, Haydon MJ, Lanz C, Nolte A, Motte P, Kroymann J, Weigel D, Kramer U (2008) Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4. Nature 453: 391-395 (15 May 2008) doi: 10.1038/nature06877; Received 20 December 2007; Accepted 28 February 2008; Published online 20 April 2008
-
(2008)
Nature
, vol.453
, pp. 391-395
-
-
Hanikenne, M.1
Talke, I.N.2
Haydon, M.J.3
Lanz, C.4
Nolte, A.5
Motte, P.6
Kroymann, J.7
Weigel, D.8
Kramer, U.9
-
43
-
-
77957922954
-
Effects of long-term cadmium exposure on growth and metabolomic profile of tomato plants
-
Hediji H, Djebali W, Cabasson C, Maucourt M, Baldet P, Bertrand A, Zoghlami LB, Deborde C, Moing A, Brouquisse R, Chaibi W, Gallusci P (2010) Effects of long-term cadmium exposure on growth and metabolomic profile of tomato plants. Ecotox Environ Safe 73:1965-1974
-
(2010)
Ecotox Environ Safe
, vol.73
, pp. 1965-1974
-
-
Hediji, H.1
Djebali, W.2
Cabasson, C.3
Maucourt, M.4
Baldet, P.5
Bertrand, A.6
Zoghlami, L.B.7
Deborde, C.8
Moing, A.9
Brouquisse, R.10
Chaibi, W.11
Gallusci, P.12
-
44
-
-
34848831773
-
Novel subsets of the Arabidopsis plasmalemma phosphoproteome identify phosphorylation sites in secondary active transporters
-
Hem S, Rofidal V, Sommerer N, Rossignol M (2007) Novel subsets of the Arabidopsis plasmalemma phosphoproteome identify phosphorylation sites in secondary active transporters. Biochem Biophys Res Commun 363:375-380
-
(2007)
Biochem Biophys Res Commun
, vol.363
, pp. 375-380
-
-
Hem, S.1
Rofidal, V.2
Sommerer, N.3
Rossignol, M.4
-
45
-
-
33750990460
-
Genome-wide transcriptome profiling of the early cadmium response of Arabidopsis roots and shoots
-
Herbette S, Taconnat L, Hugouvieux V, Piette L, Magniette MLM, Cuine S, Auroy P, Richaud P, Forestier C, Bourguignon J, Renou JP, Vavasseur A, Leonhardt N (2006) Genome-wide transcriptome profiling of the early cadmium response of Arabidopsis roots and shoots. Biochimie 88:1751-1765
-
(2006)
Biochimie
, vol.88
, pp. 1751-1765
-
-
Herbette, S.1
Taconnat, L.2
Hugouvieux, V.3
Piette, L.4
Magniette, M.L.M.5
Cuine, S.6
Auroy, P.7
Richaud, P.8
Forestier, C.9
Bourguignon, J.10
Renou, J.P.11
Vavasseur, A.12
Leonhardt, N.13
-
46
-
-
3042750616
-
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana
-
Hirai MY, Yano M, Goodenowe DB, Kanaya S, Kimura T, Awazuhara M, Arita M, Fujiwara T, Saito K (2004) Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proc Natl Acad Sci U S A 101:10205-10210
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 10205-10210
-
-
Hirai, M.Y.1
Yano, M.2
Goodenowe, D.B.3
Kanaya, S.4
Kimura, T.5
Awazuhara, M.6
Arita, M.7
Fujiwara, T.8
Saito, K.9
-
47
-
-
34547526914
-
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis
-
Hirai MY, Sugiyama K, Sawada Y, Tohge T, Obayashi T, Suzuki A, Araki R, Sakurai N, Suzuki H, Aoki K, Goda H, Nishizawa OI, Shibata D, Saito K (2007) Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc Nat Acad Sci U S A 104:6478-6483
-
(2007)
Proc Nat Acad Sci U S A
, vol.104
, pp. 6478-6483
-
-
Hirai, M.Y.1
Sugiyama, K.2
Sawada, Y.3
Tohge, T.4
Obayashi, T.5
Suzuki, A.6
Araki, R.7
Sakurai, N.8
Suzuki, H.9
Aoki, K.10
Goda, H.11
Nishizawa, O.I.12
Shibata, D.13
Saito, K.14
-
48
-
-
74549210669
-
Comparative analysis of proteomic changes in contrasting flax cultivars upon cadmium exposure
-
Hradilova J, Rehulka P, Rehulkova H, Vrbova M, Griga M, Brzobohaty B (2010) Comparative analysis of proteomic changes in contrasting flax cultivars upon cadmium exposure. Electrophoresis 31:421-431
-
(2010)
Electrophoresis
, vol.31
, pp. 421-431
-
-
Hradilova, J.1
Rehulka, P.2
Rehulkova, H.3
Vrbova, M.4
Griga, M.5
Brzobohaty, B.6
-
49
-
-
70349637139
-
Arabidopsis putative selenium-binding protein1 expression is tightly linked to cellular sulfur demand and can reduce sensitivity to stresses requiring glutathione for tolerance
-
Hugouvieux V, Dutilleul C, Jourdain A, Reynaud F, Lopez V, Bourguignon J (2009) Arabidopsis putative selenium-binding protein1 expression is tightly linked to cellular sulfur demand and can reduce sensitivity to stresses requiring glutathione for tolerance. Plant Physiol 151:768-781
-
(2009)
Plant Physiol
, vol.151
, pp. 768-781
-
-
Hugouvieux, V.1
Dutilleul, C.2
Jourdain, A.3
Reynaud, F.4
Lopez, V.5
Bourguignon, J.6
-
50
-
-
0035962774
-
Association between cadmium concentration in rice and mortality in the Jinzu River basin, Japan
-
Ishihara T, Kobayashi E, Okubo Y, Suwazono Y, Kido T, Nishijyo M, Nakagawa H, Nogawa K (2001) Association between cadmium concentration in rice and mortality in the Jinzu River basin, Japan. Toxicology 163:23-28
-
(2001)
Toxicology
, vol.163
, pp. 23-28
-
-
Ishihara, T.1
Kobayashi, E.2
Okubo, Y.3
Suwazono, Y.4
Kido, T.5
Nishijyo, M.6
Nakagawa, H.7
Nogawa, K.8
-
51
-
-
36248998115
-
A proteomics approach highlights a myriad of transporters in the Arabidopsis thaliana vacuolar membrane
-
Jaquinod M, Villiers F, Kieffer-Jaquinod S, Hugouvieux V, Bruley C, Garin J, Bourguignon J (2007a) A proteomics approach highlights a myriad of transporters in the Arabidopsis thaliana vacuolar membrane. Plant Signal Behav 2:413-415
-
(2007)
Plant Signal Behav
, vol.2
, pp. 413-415
-
-
Jaquinod, M.1
Villiers, F.2
Kieffer-Jaquinod, S.3
Hugouvieux, V.4
Bruley, C.5
Garin, J.6
Bourguignon, J.7
-
52
-
-
34147149761
-
A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture
-
Jaquinod M, Villiers F, Kieffer-Jaquinod S, Hugouvieux V, Bruley C, Garin J, Bourguignon J (2007b) A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Mol Cell Proteomics 6:394-412
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 394-412
-
-
Jaquinod, M.1
Villiers, F.2
Kieffer-Jaquinod, S.3
Hugouvieux, V.4
Bruley, C.5
Garin, J.6
Bourguignon, J.7
-
53
-
-
36848998855
-
Comparative proteomic analysis of NaCl stressresponsive proteins in Arabidopsis roots
-
Jiang Y, Yang B, Harris NS, Deyholos MK (2007) Comparative proteomic analysis of NaCl stressresponsive proteins in Arabidopsis roots. J Exp Bot 58:3591-3607
-
(2007)
J Exp Bot
, vol.58
, pp. 3591-3607
-
-
Jiang, Y.1
Yang, B.2
Harris, N.S.3
Deyholos, M.K.4
-
54
-
-
33845640047
-
Modifications to the Arabidopsis defense proteome occur prior to significant transcriptional change in response to inoculation with Pseudomonas syringae
-
Jones AM, Thomas V, Bennett MH, Mansfield J, Grant M (2006) Modifications to the Arabidopsis defense proteome occur prior to significant transcriptional change in response to inoculation with Pseudomonas syringae. Plant Physiol 142:1603-1620
-
(2006)
Plant Physiol
, vol.142
, pp. 1603-1620
-
-
Jones, A.M.1
Thomas, V.2
Bennett, M.H.3
Mansfield, J.4
Grant, M.5
-
56
-
-
75949087420
-
Virtual plant: A software platform to support systems biology research
-
Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, Thompson LP, Cabello JM, Davidson RS, Goldberg AP, Shasha DE, Coruzzi GM, Gutierrez RA (2010) Virtual plant: a software platform to support systems biology research. Plant Physiol 152:500-515
-
(2010)
Plant Physiol
, vol.152
, pp. 500-515
-
-
Katari, M.S.1
Nowicki, S.D.2
Aceituno, F.F.3
Nero, D.4
Kelfer, J.5
Thompson, L.P.6
Cabello, J.M.7
Davidson, R.S.8
Goldberg, A.P.9
Shasha, D.E.10
Coruzzi, G.M.11
Gutierrez, R.A.12
-
57
-
-
61549096121
-
Plant phosphoproteomics: An update
-
Kersten B, Agrawal GK, Durek P, Neigenfind J, Schulze W, Walther D, Rakwal R (2009) Plant phosphoproteomics: an update. Proteomics 9:964-988
-
(2009)
Proteomics
, vol.9
, pp. 964-988
-
-
Kersten, B.1
Agrawal, G.K.2
Durek, P.3
Neigenfind, J.4
Schulze, W.5
Walther, D.6
Rakwal, R.7
-
58
-
-
48249085699
-
Quantitative changes in protein expression of cadmium-exposed poplar plants
-
Kieffer P, Dommes J, Hoffmann L, Hausman JF, Renaut J (2008) Quantitative changes in protein expression of cadmium-exposed poplar plants. Proteomics 8:2514-2530
-
(2008)
Proteomics
, vol.8
, pp. 2514-2530
-
-
Kieffer, P.1
Dommes, J.2
Hoffmann, L.3
Hausman, J.F.4
Renaut, J.5
-
59
-
-
60849138410
-
Combining proteomics and metabolite analyses to unravel cadmium stress-response in poplar leaves
-
Kieffer P, Planchon S, Oufir M, Ziebel J, Dommes J, Hoffmann L, Hausman JF, Renaut J (2009a) Combining proteomics and metabolite analyses to unravel cadmium stress-response in poplar leaves. J Proteome Res 8:400-417
-
(2009)
J Proteome Res
, vol.8
, pp. 400-417
-
-
Kieffer, P.1
Planchon, S.2
Oufir, M.3
Ziebel, J.4
Dommes, J.5
Hoffmann, L.6
Hausman, J.F.7
Renaut, J.8
-
60
-
-
63549128245
-
Proteomic and enzymatic response of poplar to cadmium stress
-
Kieffer P, Schroder P, Dommes J, Hoffmann L, Renaut J, Hausman JF (2009b) Proteomic and enzymatic response of poplar to cadmium stress. J Proteomics 72:379-396
-
(2009)
J Proteomics
, vol.72
, pp. 379-396
-
-
Kieffer, P.1
Schroder, P.2
Dommes, J.3
Hoffmann, L.4
Renaut, J.5
Hausman, J.F.6
-
61
-
-
34247270870
-
The ABC transporter AtPDR8 is a cadmium extrusion pump conferring heavy metal resistance
-
Kim DY, Bovet L, Maeshima M, Martinoia E, Lee Y (2007) The ABC transporter AtPDR8 is a cadmium extrusion pump conferring heavy metal resistance. Plant J 50:207-218
-
(2007)
Plant J
, vol.50
, pp. 207-218
-
-
Kim, D.Y.1
Bovet, L.2
Maeshima, M.3
Martinoia, E.4
Lee, Y.5
-
62
-
-
36248965258
-
Characterization of AtALMT1 expression in aluminuminducible malate release and its role for rhizotoxic stress tolerance in Arabidopsis
-
Kobayashi Y, Hoekenga OA, Itoh H, Nakashima M, Saito S, Shaff JE, Maron LG, Pineros MA, Kochian LV, Koyama H (2007) Characterization of AtALMT1 expression in aluminuminducible malate release and its role for rhizotoxic stress tolerance in Arabidopsis. Plant Physiol 145:843-852
-
(2007)
Plant Physiol
, vol.145
, pp. 843-852
-
-
Kobayashi, Y.1
Hoekenga, O.A.2
Itoh, H.3
Nakashima, M.4
Saito, S.5
Shaff, J.E.6
Maron, L.G.7
Pineros, M.A.8
Kochian, L.V.9
Koyama, H.10
-
63
-
-
13544255534
-
Transcriptome profiling reveals similarities and differences in plant responses to cadmium and lead
-
Kovalchuk I, Titov V, Hohn B, Kovalchuka O (2005) Transcriptome profiling reveals similarities and differences in plant responses to cadmium and lead. Mutat Res-Fundam Mol Mech Mutagen 570:149-161
-
(2005)
Mutat Res-Fundam Mol Mech Mutagen
, vol.570
, pp. 149-161
-
-
Kovalchuk, I.1
Titov, V.2
Hohn, B.3
Kovalchuka, O.4
-
64
-
-
18544380806
-
A cadmium enzyme from a marine diatom
-
Lane TW, Saito MA, George GN, Pickering IJ, Prince RC, Morel FMM (2005) A cadmium enzyme from a marine diatom. Nature 435:42-42
-
(2005)
Nature
, vol.435
, pp. 42-42
-
-
Lane, T.W.1
Saito, M.A.2
George, G.N.3
Pickering, I.J.4
Prince, R.C.5
Morel, F.M.M.6
-
65
-
-
28644435767
-
Mobilization of vacuolar iron by AtNRAMP3 and AtNRAMP4 is essential for seed germination on low iron
-
Lanquar V, Lelievre F, Bolte S, Hames C, Alcon C, Neumann D, Vansuyt G, Curie C, Schroder A, Kramer U, Barbier-Brygoo H, Thomine S (2005) Mobilization of vacuolar iron by AtNRAMP3 and AtNRAMP4 is essential for seed germination on low iron. EMBO J 24:4041-4051
-
(2005)
EMBO J
, vol.24
, pp. 4041-4051
-
-
Lanquar, V.1
Lelievre, F.2
Bolte, S.3
Hames, C.4
Alcon, C.5
Neumann, D.6
Vansuyt, G.7
Curie, C.8
Schroder, A.9
Kramer, U.10
Barbier-Brygoo, H.11
Thomine, S.12
-
66
-
-
33947409609
-
N-15-metabolic labeling for comparative plasma membrane proteomics in Arabidopsis cells
-
Lanquar V, Kuhn L, Lelievre F, Khafif M, Espagne C, Bruley C, Barbier-Brygoo H, Garin J, Thomine S (2007) N-15-Metabolic labeling for comparative plasma membrane proteomics in Arabidopsis cells. Proteomics 7:750-754
-
(2007)
Proteomics
, vol.7
, pp. 750-754
-
-
Lanquar, V.1
Kuhn, L.2
Lelievre, F.3
Khafif, M.4
Espagne, C.5
Bruley, C.6
Barbier-Brygoo, H.7
Garin, J.8
Thomine, S.9
-
67
-
-
77950538398
-
Export of vacuolar manganese by AtNRAMP3 and AtNRAMP4 is required for optimal photosynthesis and growth under manganese deficiency
-
Lanquar V, Ramos MS, Lelievre F, Barbier-Brygoo H, Krieger-Liszkay A, Kramer U, Thomine S (2010) Export of vacuolar manganese by AtNRAMP3 and AtNRAMP4 is required for optimal photosynthesis and growth under manganese deficiency. Plant Physiol 152:1986-1999
-
(2010)
Plant Physiol
, vol.152
, pp. 1986-1999
-
-
Lanquar, V.1
Ramos, M.S.2
Lelievre, F.3
Barbier-Brygoo, H.4
Krieger-Liszkay, A.5
Kramer, U.6
Thomine, S.7
-
68
-
-
72049107810
-
Comparative proteomic analysis of the short-term responses of rice roots and leaves to cadmium
-
Lee K, Bae DW, Kim SH, Han HJ, Liu X, Park HC, Lim CO, Lee SY, Chung WS (2010) Comparative proteomic analysis of the short-term responses of rice roots and leaves to cadmium. J Plant Physiol 167:161-168
-
(2010)
J Plant Physiol
, vol.167
, pp. 161-168
-
-
Lee, K.1
Bae, D.W.2
Kim, S.H.3
Han, H.J.4
Liu, X.5
Park, H.C.6
Lim, C.O.7
Lee, S.Y.8
Chung, W.S.9
-
69
-
-
50649115358
-
Principal transcriptional programs regulating plant amino acid metabolism in response to abiotic stresses
-
Less H, Galili G (2008) Principal transcriptional programs regulating plant amino acid metabolism in response to abiotic stresses. Plant Physiol 147:316-330
-
(2008)
Plant Physiol
, vol.147
, pp. 316-330
-
-
Less, H.1
Galili, G.2
-
70
-
-
63049130982
-
Phosphoproteomic analysis of ethyleneregulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using twodimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer
-
Li H, Wong WS, Zhu L, Guo HW, Ecker J, Li N (2009) Phosphoproteomic analysis of ethyleneregulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using twodimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer. Proteomics 9:1646-1661
-
(2009)
Proteomics
, vol.9
, pp. 1646-1661
-
-
Li, H.1
Wong, W.S.2
Zhu, L.3
Guo, H.W.4
Ecker, J.5
Li, N.6
-
71
-
-
35948931439
-
An arabidopsis gene network based on the graphical Gaussian model
-
Ma SS, Gong QQ, Bohnert HJ (2007) An Arabidopsis gene network based on the graphical Gaussian model. Genome Res 17:1614-1625
-
(2007)
Genome Res
, vol.17
, pp. 1614-1625
-
-
Ma, S.S.1
Gong, Q.Q.2
Bohnert, H.J.3
-
72
-
-
72649099412
-
Seeing is believing: On the use of image databases for visually exploring plant organelle dynamics
-
Mano S, Miwa T, Nishikawa S, Mimura T, Nishimura M (2009) Seeing is believing: on the use of image databases for visually exploring plant organelle dynamics. Plant Cell Physiol 50:2000-2014
-
(2009)
Plant Cell Physiol
, vol.50
, pp. 2000-2014
-
-
Mano, S.1
Miwa, T.2
Nishikawa, S.3
Mimura, T.4
Nishimura, M.5
-
73
-
-
0000677401
-
The functions and regulation of glutathione S-transferases in plants
-
Marrs KA (1996) The functions and regulation of glutathione S-transferases in plants. Annu Rev Plant Physiol Plant Mol Biol 47:127-158
-
(1996)
Annu Rev Plant Physiol Plant Mol Biol
, vol.47
, pp. 127-158
-
-
Marrs, K.A.1
-
74
-
-
0032578466
-
Evidence for posttranscriptional activation of gamma-glutamylcysteine synthetase during plant stress responses
-
May MJ, Vernoux T, Sanchez-Fernandez R, Van Montagu M, Inze D (1998) Evidence for posttranscriptional activation of gamma-glutamylcysteine synthetase during plant stress responses. Proc Natl Acad Sci U S A 95:12049-12054
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 12049-12054
-
-
May, M.J.1
Vernoux, T.2
Sanchez-Fernandez, R.3
Van Montagu, M.4
Inze, D.5
-
75
-
-
41849139988
-
Identification of high levels of phytochelatins, glutathione and cadmium in the phloem sap of Brassica napus: A role for thiol-peptides in the long-distance transport of cadmium and the effect of cadmium on iron translocation
-
Mendoza-Cozatl DG, Butko E, Springer F, Torpey JW, Komives EA, Kehr J, Schroeder JI (2008) Identification of high levels of phytochelatins, glutathione and cadmium in the phloem sap of Brassica napus: a role for thiol-peptides in the long-distance transport of cadmium and the effect of cadmium on iron translocation. Plant J 54:249-259
-
(2008)
Plant J
, vol.54
, pp. 249-259
-
-
Mendoza-Cozatl, D.G.1
Butko, E.2
Springer, F.3
Torpey, J.W.4
Komives, E.A.5
Kehr, J.6
Schroeder, J.I.7
-
76
-
-
34250849635
-
Oxidative modifications to cellular components in plants
-
Moller IM, Jensen PE, Hansson A (2007) Oxidative modifications to cellular components in plants. Annu Rev Plant Biol 58:459-481
-
(2007)
Annu Rev Plant Biol
, vol.58
, pp. 459-481
-
-
Moller, I.M.1
Jensen, P.E.2
Hansson, A.3
-
77
-
-
67650080221
-
A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule"
-
Nero D, Krouk G, Tranchina D, Coruzzi GM (2009) A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule". BMC Syst Biol 3:59. doi:10.1186/1752-0509-1183-1159
-
(2009)
BMC Syst Biol
, vol.3
, pp. 59
-
-
Nero, D.1
Krouk, G.2
Tranchina, D.3
Coruzzi, G.M.4
-
78
-
-
35648996970
-
Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis
-
Niittylae T, Fuglsang AT, Palmgren MG, Frommer WB, Schulze WX (2007) Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis. Mol Cell Proteomics 6:1711-1726
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 1711-1726
-
-
Niittylae, T.1
Fuglsang, A.T.2
Palmgren, M.G.3
Frommer, W.B.4
Schulze, W.X.5
-
79
-
-
34548128405
-
Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses
-
Nuhse TS, Bottrill AR, Jones AME, Peck SC (2007) Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses. Plant J 51:931-940
-
(2007)
Plant J
, vol.51
, pp. 931-940
-
-
Nuhse, T.S.1
Bottrill, A.R.2
Jones, A.M.E.3
Peck, S.C.4
-
80
-
-
50649092247
-
Zinc biofortification of cereals: Problems and solutions
-
Palmgren MG, Clemens S, Williams LE, Kraemer U, Borg S, Schjorring JK, Sanders D (2008) Zinc biofortification of cereals: problems and solutions. Trends Plant Sci 13:464-473
-
(2008)
Trends Plant Sci
, vol.13
, pp. 464-473
-
-
Palmgren, M.G.1
Clemens, S.2
Williams, L.E.3
Kraemer, U.4
Borg, S.5
Schjorring, J.K.6
Sanders, D.7
-
81
-
-
20844445318
-
Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets
-
Persson S, Wei HR, Milne J, Page GP, Somerville CR (2005) Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets. Proc Natl Acad Sci U S A 102:8633-8638
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 8633-8638
-
-
Persson, S.1
Wei, H.R.2
Milne, J.3
Page, G.P.4
Somerville, C.R.5
-
82
-
-
18444382285
-
Phytoremediation
-
Pilon-Smits (2005) Phytoremediation. Ann Rev Plant Biol 56:15-29
-
(2005)
Ann Rev Plant Biol
, vol.56
, pp. 15-29
-
-
Pilon-Smits1
-
83
-
-
72149105595
-
Evidence for the existence in Arabidopsis thaliana of the proteasome proteolytic pathway: Activation in response to cadmium
-
Polge C, Jaquinod M, Holzer F, Bourguignon J, Walling L, Brouquisse R (2009) Evidence for the existence in Arabidopsis thaliana of the proteasome proteolytic pathway: activation in response to cadmium. J Biol Chem 284:35412-35424
-
(2009)
J Biol Chem
, vol.284
, pp. 35412-35424
-
-
Polge, C.1
Jaquinod, M.2
Holzer, F.3
Bourguignon, J.4
Walling, L.5
Brouquisse, R.6
-
85
-
-
77954656356
-
Changes induced by two levels of cadmium toxicity in the 2-DE protein profile of tomato roots
-
Rodriguez-Celma J, Rellan-Alvarez R, Abadia A, Abadia J, Lopez-Millan AF (2010) Changes induced by two levels of cadmium toxicity in the 2-DE protein profile of tomato roots. J Proteomics 73:1694-1706
-
(2010)
J Proteomics
, vol.73
, pp. 1694-1706
-
-
Rodriguez-Celma, J.1
Rellan-Alvarez, R.2
Abadia, A.3
Abadia, J.4
Lopez-Millan, A.F.5
-
86
-
-
33845653187
-
Proteome changes in Arabidopsis thaliana roots upon exposure to Cd2+
-
Roth U, von Roepenack-Lahaye E, Clemens S (2006) Proteome changes in Arabidopsis thaliana roots upon exposure to Cd2+. J Exp Bot 57:4003-4013
-
(2006)
J Exp Bot
, vol.57
, pp. 4003-4013
-
-
Roth, U.1
Von Roepenack-Lahaye, E.2
Clemens, S.3
-
87
-
-
75949101552
-
A systems view of responses to nutritional cues in Arabidopsis: Toward a paradigm shift for predictive network modeling
-
Ruffel S, Krouk G, Coruzzi GM (2010) A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling. Plant Physiol 152:445-452
-
(2010)
Plant Physiol
, vol.152
, pp. 445-452
-
-
Ruffel, S.1
Krouk, G.2
Coruzzi, G.M.3
-
89
-
-
33645698674
-
The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses
-
Sarry JE, Kuhn L, Ducruix C, Lafaye A, Junot C, Hugouvieux V, Jourdain A, Bastien O, Fievet JB, Vailhen D, Amekraz B, Moulin C, Ezan E, Garin J, Bourguignon J (2006) The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses. Proteomics 6:2180-2198
-
(2006)
Proteomics
, vol.6
, pp. 2180-2198
-
-
Sarry, J.E.1
Kuhn, L.2
Ducruix, C.3
Lafaye, A.4
Junot, C.5
Hugouvieux, V.6
Jourdain, A.7
Bastien, O.8
Fievet, J.B.9
Vailhen, D.10
Amekraz, B.11
Moulin, C.12
Ezan, E.13
Garin, J.14
Bourguignon, J.15
-
90
-
-
5144227035
-
Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection
-
Sato S, Soga T, Nishioka T, Tomita M (2004) Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection. Plant J 40:151-163
-
(2004)
Plant J
, vol.40
, pp. 151-163
-
-
Sato, S.1
Soga, T.2
Nishioka, T.3
Tomita, M.4
-
91
-
-
34548680723
-
Novel tonoplast transporters identified using a proteomic approach with vacuoles isolated from cauliflower buds
-
Schmidt UG, Endler A, Schelbert S, Brunner A, Schnell M, Neuhaus HE, Marty-Mazars D, Marty F, Baginsky S, Martinoia E (2007) Novel tonoplast transporters identified using a proteomic approach with vacuoles isolated from cauliflower buds. Plant Physiol 145:216-229
-
(2007)
Plant Physiol
, vol.145
, pp. 216-229
-
-
Schmidt, U.G.1
Endler, A.2
Schelbert, S.3
Brunner, A.4
Schnell, M.5
Neuhaus, H.E.6
Marty-Mazars, D.7
Marty, F.8
Baginsky, S.9
Martinoia, E.10
-
92
-
-
66449113658
-
Quantitative detection of changes in the leaf-mesophyll tonoplast proteome in dependency of a cadmium exposure of barley (Hordeum vulgare L.) plants
-
Schneider T, Schellenberg M, Meyer S, Keller F, Gehrig P, Riedel K, Lee Y, Eberl L, Martinoia E (2009) Quantitative detection of changes in the leaf-mesophyll tonoplast proteome in dependency of a cadmium exposure of barley (Hordeum vulgare L.) plants. Proteomics 9:2668-2677
-
(2009)
Proteomics
, vol.9
, pp. 2668-2677
-
-
Schneider, T.1
Schellenberg, M.2
Meyer, S.3
Keller, F.4
Gehrig, P.5
Riedel, K.6
Lee, Y.7
Eberl, L.8
Martinoia, E.9
-
93
-
-
77955873040
-
Proteomics approaches to understand protein phosphorylation in pathway modulation
-
Schulze WX (2010) Proteomics approaches to understand protein phosphorylation in pathway modulation. Curr Opin Plant Biol 13:280-287
-
(2010)
Curr Opin Plant Biol
, vol.13
, pp. 280-287
-
-
Schulze, W.X.1
-
94
-
-
52149095441
-
Plant pathogenesis-related (PR) proteins: A focus on PR peptides
-
Sels J, Mathys J, De Coninck BM, Cammue BP, De Bolle MF (2008) Plant pathogenesis-related (PR) proteins: a focus on PR peptides. Plant Physiol Biochem 46:941-950
-
(2008)
Plant Physiol Biochem
, vol.46
, pp. 941-950
-
-
Sels, J.1
Mathys, J.2
De Coninck, B.M.3
Cammue, B.P.4
De Bolle, M.F.5
-
95
-
-
75149127987
-
Leaf proteome responses of Arabidopsis thaliana exposed to mild cadmium stress
-
Semane B, Dupae J, Cuypers A, Noben JP, Tuomainen M, Tervahauta A, Karenlampi S, Van Belleghem F, Smeets K, Vangronsveld J (2010) Leaf proteome responses of Arabidopsis thaliana exposed to mild cadmium stress. J Plant Physiol 167:247-254
-
(2010)
J Plant Physiol
, vol.167
, pp. 247-254
-
-
Semane, B.1
Dupae, J.2
Cuypers, A.3
Noben, J.P.4
Tuomainen, M.5
Tervahauta, A.6
Karenlampi, S.7
Van Belleghem, F.8
Smeets, K.9
Vangronsveld, J.10
-
96
-
-
0038460058
-
Plant systems biology: Lessons from a fruitful collaboration
-
Shasha DE (2003) Plant systems biology: lessons from a fruitful collaboration. Plant Physiol 132:415-416
-
(2003)
Plant Physiol
, vol.132
, pp. 415-416
-
-
Shasha, D.E.1
-
97
-
-
3142639292
-
Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana
-
Shimaoka T, Ohnishi M, Sazuka T, Mitsuhashi N, Hara-Nishimura I, Shimazaki KI, Maeshima M, Yokota A, Tomizawa KI, Mimura T (2004) Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Plant Cell Physiol 45:672-683
-
(2004)
Plant Cell Physiol
, vol.45
, pp. 672-683
-
-
Shimaoka, T.1
Ohnishi, M.2
Sazuka, T.3
Mitsuhashi, N.4
Hara-Nishimura, I.5
Shimazaki, K.I.6
Maeshima, M.7
Yokota, A.8
Tomizawa, K.I.9
Mimura, T.10
-
98
-
-
33749431711
-
Proteins induced by cadmium in soybean cells
-
Sobkowiak R, Deckert J (2006) Proteins induced by cadmium in soybean cells. J Plant Physiol 163:1203-1206
-
(2006)
J Plant Physiol
, vol.163
, pp. 1203-1206
-
-
Sobkowiak, R.1
Deckert, J.2
-
99
-
-
78650426070
-
Arsenic tolerance in Arabidopsis is mediated by two ABCC-type phytochelatin transporters
-
Song WY, Park J, Mendoza-Cozatl DG, Suter-Grotemeyer M, Shim D, Hortensteiner S, Geisler M, Weder B, Rea PA, Rentsch D, Schroeder JI, Lee Y, Martinoia E (2010) Arsenic tolerance in Arabidopsis is mediated by two ABCC-type phytochelatin transporters. Proc Natl Acad Sci U S A 107:21187-21192
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 21187-21192
-
-
Song, W.Y.1
Park, J.2
Mendoza-Cozatl, D.G.3
Suter-Grotemeyer, M.4
Shim, D.5
Hortensteiner, S.6
Geisler, M.7
Weder, B.8
Rea, P.A.9
Rentsch, D.10
Schroeder, J.I.11
Lee, Y.12
Martinoia, E.13
-
100
-
-
74449093167
-
The responses of Arabidopsis thaliana to cadmium exposure explored via metabolite profiling
-
Sun XM, Zhang JX, Zhang HJ, Ni YW, Zhang Q, Chen JP, Guan YF (2010) The responses of Arabidopsis thaliana to cadmium exposure explored via metabolite profiling. Chemosphere 78:840-845
-
(2010)
Chemosphere
, vol.78
, pp. 840-845
-
-
Sun, X.M.1
Zhang, J.X.2
Zhang, H.J.3
Ni, Y.W.4
Zhang, Q.5
Chen, J.P.6
Guan, Y.F.7
-
101
-
-
1242294379
-
Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography
-
Szponarski W, Sommerer N, Boyer JC, Rossignol M, Gibrat R (2004) Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics 4:397-406
-
(2004)
Proteomics
, vol.4
, pp. 397-406
-
-
Szponarski, W.1
Sommerer, N.2
Boyer, J.C.3
Rossignol, M.4
Gibrat, R.5
-
102
-
-
27244440204
-
KaPPA-view: A web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps
-
Tokimatsu T, Sakurai N, Suzuki H, Ohta H, Nishitani K, Koyama T, Umezawa T, Misawa N, Saito K, Shibata D (2005) KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. Plant Physiol 138:1289-1300
-
(2005)
Plant Physiol
, vol.138
, pp. 1289-1300
-
-
Tokimatsu, T.1
Sakurai, N.2
Suzuki, H.3
Ohta, H.4
Nishitani, K.5
Koyama, T.6
Umezawa, T.7
Misawa, N.8
Saito, K.9
Shibata, D.10
-
103
-
-
0345168159
-
Monolithic silica-based capillary reversed-phase liquid chromatography/electrospray mass spectrometry for plant metabolomics
-
Tolstikov VV, Lommen A, Nakanishi K, Tanaka N, Fiehn O (2003) Monolithic silica-based capillary reversed-phase liquid chromatography/electrospray mass spectrometry for plant metabolomics. Anal Chem 75:6737-6740
-
(2003)
Anal Chem
, vol.75
, pp. 6737-6740
-
-
Tolstikov, V.V.1
Lommen, A.2
Nakanishi, K.3
Tanaka, N.4
Fiehn, O.5
-
104
-
-
0032033674
-
An ABC-transporter of Arabidopsis thaliana has both glutathione-conjugate and chlorophyll catabolite transport activity
-
Tommasini R, Vogt E, Fromenteau M, Hortensteiner S, Matile P, Amrhein N, Martinoia E (1998) An ABC-transporter of Arabidopsis thaliana has both glutathione-conjugate and chlorophyll catabolite transport activity. Plant J 13:773-780
-
(1998)
Plant J
, vol.13
, pp. 773-780
-
-
Tommasini, R.1
Vogt, E.2
Fromenteau, M.3
Hortensteiner, S.4
Matile, P.5
Amrhein, N.6
Martinoia, E.7
-
105
-
-
70449115789
-
Co-expression tools for plant biology: Opportunities for hypothesis generation and caveats
-
Usadel B, Obayashi T, Mutwil M, Giorgi FM, Bassel GW, Tanimoto M, Chow A, Steinhauser D, Persson S, Provart NJ (2009) Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ 32:1633-1651
-
(2009)
Plant Cell Environ
, vol.32
, pp. 1633-1651
-
-
Usadel, B.1
Obayashi, T.2
Mutwil, M.3
Giorgi, F.M.4
Bassel, G.W.5
Tanimoto, M.6
Chow, A.7
Steinhauser, D.8
Persson, S.9
Provart, N.J.10
-
106
-
-
38849135951
-
Expression differences for genes involved in lignin, glutathione and sulphate metabolism in response to cadmium in Arabidopsis thaliana and the related Zn/Cd-hyperaccumulator Thlaspi caerulescens
-
van de Mortel JE, Schat H, Moerland PD, Van Themaat EVL, Van der Ent S, Blankestijn H, Ghandilyan A, Tsiatsiani S, Aarts MGM (2008) Expression differences for genes involved in lignin, glutathione and sulphate metabolism in response to cadmium in Arabidopsis thaliana and the related Zn/Cd-hyperaccumulator Thlaspi caerulescens. Plant Cell Environ 31:301-324
-
(2008)
Plant Cell Environ
, vol.31
, pp. 301-324
-
-
Van De-Mortel, J.E.1
Schat, H.2
Moerland, P.D.3
Van Themaat, E.V.L.4
Van-Der Ent, S.5
Blankestijn, H.6
Ghandilyan, A.7
Tsiatsiani, S.8
Aarts, M.G.M.9
-
107
-
-
66949176994
-
Mechanisms to cope with arsenic or cadmium excess in plants
-
Verbruggen N, Hermans C, Schat H (2009) Mechanisms to cope with arsenic or cadmium excess in plants. Curr Opin Plant Biol 12:364-372
-
(2009)
Curr Opin Plant Biol
, vol.12
, pp. 364-372
-
-
Verbruggen, N.1
Hermans, C.2
Schat, H.3
-
108
-
-
0035896609
-
A proteome analysis of the cadmium response in Saccharomyces cerevisiae
-
Vido K, Spector D, Lagniel G, Lopez S, Toledano MB, Labarre J (2001) A proteome analysis of the cadmium response in Saccharomyces cerevisiae. J Biol Chem 276:8469-8474
-
(2001)
J Biol Chem
, vol.276
, pp. 8469-8474
-
-
Vido, K.1
Spector, D.2
Lagniel, G.3
Lopez, S.4
Toledano, M.B.5
Labarre, J.6
-
109
-
-
77952555059
-
Two-dimensional liquid chromatography technique coupled with mass spectrometry analysis to compare the proteomic response to cadmium stress in plants
-
Visioli G, Marmiroli M, Marmiroli N (2010) Two-dimensional liquid chromatography technique coupled with mass spectrometry analysis to compare the proteomic response to cadmium stress in plants. J Biomed Biotechnol. doi:567510.561155/562010/567510
-
(2010)
J Biomed Biotechnol.
-
-
Visioli, G.1
Marmiroli, M.2
Marmiroli, N.3
-
110
-
-
0037371977
-
Assessment of H-1 NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana
-
Ward JL, Harris C, Lewis J, Beale MH (2003) Assessment of H-1 NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana. Phytochemistry 62:949-957
-
(2003)
Phytochemistry
, vol.62
, pp. 949-957
-
-
Ward, J.L.1
Harris, C.2
Lewis, J.3
Beale, M.H.4
-
111
-
-
1642523628
-
Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors
-
Weber M, Harada E, Vess C, von Roepenack-Lahaye E, Clemens S (2004) Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors. Plant J 37:269-281
-
(2004)
Plant J
, vol.37
, pp. 269-281
-
-
Weber, M.1
Harada, E.2
Vess, C.3
Von Roepenack-Lahaye, E.4
Clemens, S.5
-
112
-
-
33645702954
-
Comparative transcriptome analysis of toxic metal responses in Arabidopsis thaliana and the Cd2+-hypertolerant facultative metallophyte Arabidopsis halleri
-
Weber M, Trampczynska A, Clemens S (2006) Comparative transcriptome analysis of toxic metal responses in Arabidopsis thaliana and the Cd2+-hypertolerant facultative metallophyte Arabidopsis halleri. Plant Cell Environ 29:950-963
-
(2006)
Plant Cell Environ
, vol.29
, pp. 950-963
-
-
Weber, M.1
Trampczynska, A.2
Clemens, S.3
-
113
-
-
52649124306
-
A proteomic and phosphoproteomic analysis of Oryza sativa plasma membrane and vacuolar membrane
-
Whiteman SA, Nuhse TS, Ashford DA, Sanders D, Maathuis FJM (2008a) A proteomic and phosphoproteomic analysis of Oryza sativa plasma membrane and vacuolar membrane. Plant J 56:146-156
-
(2008)
Plant J
, vol.56
, pp. 146-156
-
-
Whiteman, S.A.1
Nuhse, T.S.2
Ashford, D.A.3
Sanders, D.4
Maathuis, F.J.M.5
-
114
-
-
52649180552
-
Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana
-
Whiteman SA, Serazetdinova L, Jones AME, Sanders D, Rathjen J, Peck SC, Maathuis FJM (2008b) Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana. Proteomics 8:3536-3547
-
(2008)
Proteomics
, vol.8
, pp. 3536-3547
-
-
Whiteman, S.A.1
Serazetdinova, L.2
Jones, A.M.E.3
Sanders, D.4
Rathjen, J.5
Peck, S.C.6
Maathuis, F.J.M.7
-
115
-
-
0038439687
-
Liquid chromatography with ultraviolet absorbance-mass spectrometric detection and with nuclear magnetic resonance spectroscopy: A powerful combination for the on-line structural investigation of plant metabolites
-
Wolfender JL, Ndjoko K, Hostettmann K (2003) Liquid chromatography with ultraviolet absorbance-mass spectrometric detection and with nuclear magnetic resonance spectroscopy: a powerful combination for the on-line structural investigation of plant metabolites. J Chromatogr A 1000:437-455
-
(2003)
J Chromatogr A
, vol.1000
, pp. 437-455
-
-
Wolfender, J.L.1
Ndjoko, K.2
Hostettmann, K.3
-
116
-
-
74249114406
-
Gene expression analysis in cadmium-stressed roots of a low cadmium-accumulating solanaceous plant, Solanum torvum
-
Yamaguchi H, Fukuoka H, Arao T, Ohyama A, Nunome T, Miyatake K, Negoro S (2010) Gene expression analysis in cadmium-stressed roots of a low cadmium-accumulating solanaceous plant, Solanum torvum. J Exp Bot 61:423-437
-
(2010)
J Exp Bot
, vol.61
, pp. 423-437
-
-
Yamaguchi, H.1
Fukuoka, H.2
Arao, T.3
Ohyama, A.4
Nunome, T.5
Miyatake, K.6
Negoro, S.7
-
117
-
-
77957222651
-
Modification-specific proteomics in plant biology
-
Ytterberg AJ, Jensen ON (2010) Modification-specific proteomics in plant biology. J Proteomics 73:2249-2266
-
(2010)
J Proteomics
, vol.73
, pp. 2249-2266
-
-
Ytterberg, A.J.1
Jensen, O.N.2
-
118
-
-
0030574278
-
Heavy metal detoxification in higher plants - A review
-
Zenk MH (1996) Heavy metal detoxification in higher plants - a review. Gene 179:21-30
-
(1996)
Gene
, vol.179
, pp. 21-30
-
-
Zenk, M.H.1
-
119
-
-
64549153560
-
Comparative transcriptomic characterization of aluminum, sodium chloride, cadmium and copper rhizotoxicities in Arabidopsis thaliana
-
Zhao CR, Ikka T, Sawaki Y, Kobayashi Y, Suzuki Y, Hibino T, Sato S, Sakurai N, Shibata D, Koyama H (2009) Comparative transcriptomic characterization of aluminum, sodium chloride, cadmium and copper rhizotoxicities in Arabidopsis thaliana. BMC Plant Biol 9:32. doi:10.1186/1471-2229-1189-1132
-
(2009)
BMC Plant Biol
, vol.9
, pp. 32
-
-
Zhao, C.R.1
Ikka, T.2
Sawaki, Y.3
Kobayashi, Y.4
Suzuki, Y.5
Hibino, T.6
Sato, S.7
Sakurai, N.8
Shibata, D.9
Koyama, H.10
-
120
-
-
77950670097
-
Transcriptomic profiling of major carbon and amino acid metabolism in the roots of Arabidopsis thaliana treated with various rhizotoxic ions
-
Zhao CR, Sawaki Y, Sakurai N, Shibata D, Koyama H (2010) Transcriptomic profiling of major carbon and amino acid metabolism in the roots of Arabidopsis thaliana treated with various rhizotoxic ions. Soil Sci Plant Nutr 56:150-162
-
(2010)
Soil Sci Plant Nutr
, vol.56
, pp. 150-162
-
-
Zhao, C.R.1
Sawaki, Y.2
Sakurai, N.3
Shibata, D.4
Koyama, H.5
|