Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography

Proteomics

Volumn 4, Issue 2, 2004, Pages 397-406

  Szponarski, Wojciech ^a   Sommerer, Nicolas ^b   Boyer, Jean Christophe ^a   Rossignol, Michel ^b   Gibrat, Rémy ^a  

^a INRA   (France)

^b CEMAGREF   (France)

Author keywords

Arabidopsis thaliana; Liquid chromatography; Mass spectrometry; Membrane proteins; Vacuole

Indexed keywords

CELL EXTRACT; DETERGENT; DODECYL BETA DEXTRO MALTOSIDE; GLUTATHIONE S CONJUGATE ADENOSINE TRIPHOSPHATASE; INORGANIC PYROPHOSPHATASE; MEMBRANE PROTEIN; MULTIDRUG RESISTANCE PROTEIN 1; PROTON PYROPHOSPHATASE; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATASE; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARABIDOPSIS; CALCIUM HOMEOSTASIS; CELL CULTURE; CONFERENCE PAPER; GEL FILTRATION; ION EXCHANGE CHROMATOGRAPHY; LIQUID CHROMATOGRAPHY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; SOLUBILIZATION; TONOPLAST; TRANSMEMBRANE DOMAIN; TWO DIMENSIONAL LIQUID CHROMATOGRAPHY; UNINDEXED SEQUENCE;

ARABIDOPSIS; CHROMATOGRAPHY, GEL; CHROMATOGRAPHY, ION EXCHANGE; DATABASES, PROTEIN; DETERGENTS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; INTRACELLULAR MEMBRANES; MEMBRANE PROTEINS; PLANT PROTEINS; PROTEIN TRANSPORT; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; VACUOLES;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 1242294379     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200300607     Document Type: Conference Paper

References (43)

1. Wallin, E., von Heijne, G., Prot. Sci. 1998, 7, 1029-1038.
2. Stevens, T. J., Arkin, I. T., Proteins 2000, 39, 417-420.
3. Reiss, T., Trends Biotechnol. 2001, 19, 496-499.
4. Görg, A., Obermaier, C., Boguth, G., Harder, A. et al., Electrophoresis 2000, 21, 1037-1053.
5. Santoni, V., Malloy, M., Rabilloud, T., Electrophoresis 2000, 21, 1054-1070.
6. Gygi, S., Corthals, G. L., Zhang, Y., Rochon, Y., Aebersold, R., Proc. Natl. Acad. Sci. USA 2000, 97, 9390-9395.
7. Wu, C. C., Yates, J. R., Nat. Biotechnol. 2003 21, 262-267.
8. Han, D. K., Eng, J., Zhou, H., Aebersold, R., Nature Biotechnol. 2001, 19, 946-951.
9. Santoni, V., Rouquié, D., Doumas, P., Mansion, M. et al., Plant J. 1998, 16, 633-641.
10. Prime, T. A., Sherrier, D. J., Mahon, P., Packman, L. C., Dupree, P., Electrophoresis 2000, 21, 3488-3499.
11. Kruft, V., Eubel, H., Jänsch, L., Werhahn, W., Braun, H.-P., Plant Physiol. 2001, 127, 1694-1710.
12. Ferro, M., Salvi, D., Rivière-Rolland, H., Vermat, T. et al., Proc. Natl. Acad. Sci. USA 2002, 99, 11487-11492.
13. Maltman, D. J., Simon, W. J., Wheeler, C. H., Dunn, M. J. et al., Electrophoresis 2002, 23, 626-639.
14. Millar, A. H., Heazlewood, J. L., Plant Physiol. 2003, 131, 443-453.
15. Axelos, M., Curie, C., Mazzolini, L., Bardet, C., Lescure, B., Plant Physiol. Biochem. 1992, 30, 123-128.
16. Laemmli, U. K., Nature 1970, 222, 680-685.
17. Jensen, O. N., Wilm, M., Shevchenko, A., Mann, M., Methods Mol. Biol. 1999, 112, 513-530.
18. http://prowl.rockefeller.edu/cgi-bin/ProFound
19. http://www.cbs.dtu.dk/services/TargetP/
20. http://www.expasy.org/tools/protparam.html
21. http://www.ch.embnet.org/software/TMPRED_form.html
22. http://www.enzim.hu/hmmtop/
23. Ward, J. M., Bioinformatics 2001, 17, 560-563.
24. Luche, S., Santoni, V., Rabilloud, T., Proteomics 2003, 3, 249-253.
25. Van Bogelen, R. A., Schiller, E. E., Thomas, J. D., Neldhardt, F. C., Electrophoresis 1999, 20, 49-59.
26. Blonder J., Goshe, M. B., Moore, R. J., Pasa-Tolic, L. et al., J. Proteome Res. 2002, 1, 351-360.
27. Martinoia, E., Massonneau, A., Frangne, N., Plant Cell Physiol. 2000, 41, 1175-1186.
28. Lu, Y. P., Li, Z. S., Rea, P. A., Proc. Natl. Acad. Sci. USA 1997, 94, 8243-8248.
29. Sakano, K., Yazaki, Y., Okihara, K., Mimura, T., Kiyota, S., Plant Physiol. 1995, 108, 295-302.
30. Muchhal, U. S., Pardo, J. M., Raghothama, K. G., Proc. Natl. Acad. Sci. USA 1996, 93, 10519-10523.
31. Sze, H., Uang, F., Hwang, I., Curran, A. C., Harper, J. F., Ann. Rev. Plant Physiol. Plant Mol. Biol. 2000, 51, 433-462.
32. White, P. J., Biochim. Biophys. Acta 2000, 1465, 171-189.
33. Hama, H., Tall, G. G., Horazdovsky, B. F., J. Biol. Chem. 1999, 274, 15284-15291.
34. Deloche, O., Schekman, R. W., Mol. Biol. Cell 2002, 13, 4296-4307.
35. Cremona, O., Dev. Cell 2001, 1, 592-604.
36. Nichols, B. J., Ungermann, C., Pelham, H. R., Wickner, W. T., Haas, A., Nature 1997, 387, 199-202.
37. Chrispeels, M. J., Herman, E. M., Plant Physiol. 2000, 123, 1227-1234.
38. Ed Echeverría, E., Plant Physiol. 2000, 123, 1217-1226.
39. Kutsuna, N., Hasezawa, S., Plant Cell Physiol. 2002, 43, 965-973.
40. Tavernier, E., Pugin, A., Biochim. Biophys. Acta 1995, 1233, 118-122.
41. Muntz, K., Shutov, A. D., Trends Plant Sci. 2002, 7, 340-344.
42. Mehlhorn, H., Lelandais, M., Korth, H. G., Foyer, C. H., FEBS Lett. 1996, 378, 203-206.
43. Etxeberria, E., Gonzalez, P., J. Exp. Bot. 2003, 54, 1407-1414.