-
1
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
DOI 10.1038/ng1423
-
Osborne CS, Chakalova L, Brown KE et al (2004) Active genes dynamically colocalize to shared sites of ongoing transcription. Nat Genet 36:1065-1071 (Pubitemid 41184467)
-
(2004)
Nature Genetics
, vol.36
, Issue.10
, pp. 1065-1071
-
-
Osborne, C.S.1
Chakalova, L.2
Brown, K.E.3
Carter, D.4
Horton, A.5
Debrand, E.6
Goyenechea, B.7
Mitchell, J.A.8
Lopes, S.9
Reik, W.10
Fraser, P.11
-
2
-
-
30944469000
-
Coregulated human globin genes are frequently in spatial proximity when active
-
DOI 10.1083/jcb.200507073
-
Brown JM, Leach J, Reittie JE, Atzberger A, Lee-Prudhoe J, Wood WG, Higgs DR, Iborra FJ, Buckle VJ (2006) Coregulated human globin genes are frequently in spatial proximity when active. J Cell Biol 172:177-187 (Pubitemid 43112966)
-
(2006)
Journal of Cell Biology
, vol.172
, Issue.2
, pp. 177-187
-
-
Brown, J.M.1
Leach, J.2
Reittie, J.E.3
Atzberger, A.4
Lee-Prudhoe, J.5
Wood, W.G.6
Higgs, D.R.7
Iborra, F.J.8
Buckle, V.J.9
-
3
-
-
52249111620
-
Association between active genes occurs at nuclear speckles and is modulated by chromatin environment
-
2542471 18809724 10.1083/jcb.200803174
-
Brown JM, Green J, das Neves RP et al (2008) Association between active genes occurs at nuclear speckles and is modulated by chromatin environment. J Cell Biol 182:1083-1097
-
(2008)
J Cell Biol
, vol.182
, pp. 1083-1097
-
-
Brown, J.M.1
Green, J.2
Das Neves, R.P.3
-
4
-
-
73349090560
-
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
-
3237402 20010836 10.1038/ng.496
-
Schoenfelder S, Sexton T, Chakalova L et al (2010) Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nat Genet 42:53-61
-
(2010)
Nat Genet
, vol.42
, pp. 53-61
-
-
Schoenfelder, S.1
Sexton, T.2
Chakalova, L.3
-
5
-
-
0033780450
-
A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
-
11017073 10.1038/79896
-
Cohen BA, Mitra RD, Hughes JD, Church GM (2000) A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nat Genet 26:183-186
-
(2000)
Nat Genet
, vol.26
, pp. 183-186
-
-
Cohen, B.A.1
Mitra, R.D.2
Hughes, J.D.3
Church, G.M.4
-
6
-
-
0037194732
-
Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans
-
DOI 10.1038/nature01012
-
Roy PJ, Stuart JM, Lund J, Kim SK (2002) Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans. Nature 418:975-979 (Pubitemid 34976032)
-
(2002)
Nature
, vol.418
, Issue.6901
, pp. 975-979
-
-
Roy, P.J.1
Stuart, J.M.2
Lund, J.3
Kim, S.K.4
-
7
-
-
37249087838
-
Coordinate gene regulation during hematopoiesis is related to genomic organization
-
DOI 10.1371/journal.pbio.0050309
-
Kosak ST, Scalzo D, Alworth SV, Li F, Palmer S, Enver T, Lee JSJ, Groudine M (2007) Coordinate gene regulation during hematopoiesis is related to genomic organization. PLoS Biol 5:e309 (Pubitemid 350276933)
-
(2007)
PLoS Biology
, vol.5
, Issue.11
, pp. 2602-2613
-
-
Kosak, S.T.1
Scalzo, D.2
Alworth, S.V.3
Li, F.4
Palmer, S.5
Enver, T.6
Lee, J.S.J.7
Groudine, M.8
-
8
-
-
0037069672
-
Large clusters of co-expressed genes in the Drosophila genome
-
DOI 10.1038/nature01216
-
Boutanaev AM, Kalmykova AI, Shevelyov YY, Nurminsky DI (2002) Large clusters of co-expressed genes in the Drosophila genome. Nature 420:666-669 (Pubitemid 36764497)
-
(2002)
Nature
, vol.420
, Issue.6916
, pp. 666-669
-
-
Boutanaev, A.M.1
Kalmykova, A.I.2
Shevelyov, Y.Y.3
Nurminsky, D.I.4
-
9
-
-
40849094620
-
Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome
-
DOI 10.1186/1471-2148-8-2
-
Mezey J, Nuzhdin S, Ye F, Jones C (2008) Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome. BMC Evol Biol 8:2 (Pubitemid 351395242)
-
(2008)
BMC Evolutionary Biology
, vol.8
, Issue.1
, pp. 2
-
-
Mezey, J.G.1
Nuzhdin, S.V.2
Ye, F.3
Jones, C.D.4
-
10
-
-
34247256762
-
Genomic organization of transcriptomes in mammals: Coregulation and cofunctionality
-
DOI 10.1016/j.ygeno.2007.01.010, PII S0888754307000158
-
Purmann A, Toedling J, Schueler M, Carninci P, Lehrach H, Hayashizaki Y, Huber W, Sperling S (2007) Genomic organization of transcriptomes in mammals: coregulation and cofunctionality. Genomics 89:580-587 (Pubitemid 46621081)
-
(2007)
Genomics
, vol.89
, Issue.5
, pp. 580-587
-
-
Purmann, A.1
Toedling, J.2
Schueler, M.3
Carninci, P.4
Lehrach, H.5
Hayashizaki, Y.6
Huber, W.7
Sperling, S.8
-
11
-
-
25444516785
-
Chromosomal clustering of a human transcriptome reveals regulatory background
-
DOI 10.1186/1471-2105-6-230
-
Vogel JH, von Heydebreck A, Purmann A, Sperling S (2005) Chromosomal clustering of a human transcriptome reveals regulatory background. BMC Bioinformatics 6:230 (Pubitemid 41372436)
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 230
-
-
Vogel, J.H.1
Von Heydebreck, A.2
Purmann, A.3
Sperling, S.4
-
12
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
3555144 22495304 10.1038/nature11049
-
Nora EP, Lajoie BR, Schulz EG et al (2012) Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 485:381-385
-
(2012)
Nature
, vol.485
, pp. 381-385
-
-
Nora, E.P.1
Lajoie, B.R.2
Schulz, E.G.3
-
13
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
3356448 22495300 10.1038/nature11082
-
Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485:376-380
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
Hu, M.7
Liu, J.S.8
Ren, B.9
-
14
-
-
84856747483
-
Three-dimensional folding and functional organization principles of the Drosophila genome
-
22265598 10.1016/j.cell.2012.01.010
-
Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, Hoichman M, Parrinello H, Tanay A, Cavalli G (2012) Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 148:458-472
-
(2012)
Cell
, vol.148
, pp. 458-472
-
-
Sexton, T.1
Yaffe, E.2
Kenigsberg, E.3
Bantignies, F.4
Leblanc, B.5
Hoichman, M.6
Parrinello, H.7
Tanay, A.8
Cavalli, G.9
-
15
-
-
34548210885
-
Myc dynamically and preferentially relocates to a transcription factory occupied by Igh
-
DOI 10.1371/journal.pbio.0050192
-
Osborne CS, Chakalova L, Mitchell JA, Horton A, Wood AL, Bolland DJ, Corcoran AE, Fraser P (2007) Myc dynamically and preferentially relocates to a transcription factory occupied by Igh. PLoS Biol 5:e192 (Pubitemid 47328279)
-
(2007)
PLoS Biology
, vol.5
, Issue.8
, pp. 1763-1772
-
-
Osborne, C.S.1
Chakalova, L.2
Mitchell, J.A.3
Horton, A.4
Wood, A.L.5
Bolland, D.J.6
Corcoran, A.E.7
Fraser, P.8
-
16
-
-
20444494936
-
Interchromosomal associations between alternatively expressed loci
-
DOI 10.1038/nature03574
-
Spilianakis CG, Lalioti MD, Town T, Lee GR, Flavell RA (2005) Interchromosomal associations between alternatively expressed loci. Nature 435:637-645 (Pubitemid 40825504)
-
(2005)
Nature
, vol.435
, Issue.7042
, pp. 637-645
-
-
Spilianakis, C.G.1
Lalioti, M.D.2
Town, T.3
Lee, G.R.4
Flavell, R.A.5
-
17
-
-
39449123232
-
Allele-specific nuclear positioning of the monoallelically expressed astrocyte marker GFAP
-
DOI 10.1101/gad.1634608
-
Takizawa T, Gudla PR, Guo L, Lockett S, Misteli T (2008) Allele-specific nuclear positioning of the monoallelically expressed astrocyte marker GFAP. Genes Dev 22:489-498 (Pubitemid 351272756)
-
(2008)
Genes and Development
, vol.22
, Issue.4
, pp. 489-498
-
-
Takizawa, T.1
Gudla, P.R.2
Guo, L.3
Lockett, S.4
Misteli, T.5
-
18
-
-
33750212321
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
-
DOI 10.1038/ng1896, PII NG1896
-
Simonis M, Klous P, Splinter E, Moshkin Y, Willemsen R, de Wit E, van Steensel B, de Laat W (2006) Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat Genet 38:1348-1354 (Pubitemid 44646300)
-
(2006)
Nature Genetics
, vol.38
, Issue.11
, pp. 1348-1354
-
-
Simonis, M.1
Klous, P.2
Splinter, E.3
Moshkin, Y.4
Willemsen, R.5
De Wit, E.6
Van Steensel, B.7
De Laat, W.8
-
19
-
-
45749154811
-
Maintenane of long-ranage DNA interactions after inhibition of ongoing RNA polymerase II transcription
-
DOI 10.1371/journal.pone.0001661
-
Palstra R-J, Simonis M, Klous P, Brasset E, Eijkelkamp B, de Laat W (2008) Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription. PLoS One 3:e1661 (Pubitemid 351865450)
-
(2008)
PLoS ONE
, vol.3
, Issue.2
-
-
Palstra, R.-J.1
Simonis, M.2
Klous, P.3
Brasset, E.4
Eijkelkamp, B.5
De Laat, W.6
-
20
-
-
70449103609
-
An oestrogen-receptor-alpha-bound human chromatin interactome
-
2774924 19890323 10.1038/nature08497
-
Fullwood MJ, Liu MH, Pan YF et al (2009) An oestrogen-receptor-alpha- bound human chromatin interactome. Nature 462:58-64
-
(2009)
Nature
, vol.462
, pp. 58-64
-
-
Fullwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
-
21
-
-
84862908850
-
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
-
3339270 22265404 10.1016/j.cell.2011.12.014
-
Li G, Ruan X, Auerbach RK et al (2012) Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 148:84-98
-
(2012)
Cell
, vol.148
, pp. 84-98
-
-
Li, G.1
Ruan, X.2
Auerbach, R.K.3
-
22
-
-
0141706933
-
Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: Evidence for local euchromatic neighborhoods
-
DOI 10.1083/jcb.200303131
-
Shopland LS, Johnson CV, Byron M, McNeil J, Lawrence JB (2003) Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: evidence for local euchromatic neighborhoods. J Cell Biol 162:981-990 (Pubitemid 37179876)
-
(2003)
Journal of Cell Biology
, vol.162
, Issue.6
, pp. 981-990
-
-
Shopland, L.S.1
Johnson, C.V.2
Byron, M.3
McNeil, J.4
Lawrence, J.B.5
-
23
-
-
78651502108
-
Association of adipogenic genes with SC-35 domains during porcine adipogenesis
-
21127962 10.1007/s10577-010-9176-1
-
Szczerbal I, Bridger JM (2010) Association of adipogenic genes with SC-35 domains during porcine adipogenesis. Chromosome Res 18:887-895
-
(2010)
Chromosome Res
, vol.18
, pp. 887-895
-
-
Szczerbal, I.1
Bridger, J.M.2
-
24
-
-
0033546210
-
The organization of replication and transcription
-
DOI 10.1126/science.284.5421.1790
-
Cook PR (1999) The organization of replication and transcription. Science 284:1790-1795 (Pubitemid 29291422)
-
(1999)
Science
, vol.284
, Issue.5421
, pp. 1790-1795
-
-
Cook, P.R.1
-
25
-
-
0029973080
-
Active RNA polymerases are localized within discrete transcription 'factories' in human nuclei
-
Iborra FJ, Pombo A, Jackson DA, Cook PR (1996) Active RNA polymerases are localized within discrete transcription "factories" in human nuclei. J Cell Sci 109(Pt 6):1427-1436 (Pubitemid 26190492)
-
(1996)
Journal of Cell Science
, vol.109
, Issue.6
, pp. 1427-1436
-
-
Iborra, F.J.1
Pombo, A.2
Jackson, D.A.3
Cook, P.R.4
-
26
-
-
0030589556
-
The topology of transcription by immobilized polymerases
-
DOI 10.1006/excr.1996.0355
-
Iborra FJ, Pombo A, McManus J, Jackson DA, Cook PR (1996) The topology of transcription by immobilized polymerases. Exp Cell Res 229:167-173 (Pubitemid 27026900)
-
(1996)
Experimental Cell Research
, vol.229
, Issue.2
, pp. 167-173
-
-
Iborra, F.J.1
Pombo, A.2
McManus, J.3
Jackson, D.A.4
Cook, P.R.5
-
27
-
-
77955047663
-
Active RNA polymerases: Mobile or immobile molecular machines?
-
2903595 20644712 10.1371/journal.pbio.1000419
-
Papantonis A, Larkin JD, Wada Y, Ohta Y, Ihara S, Kodama T, Cook PR (2010) Active RNA polymerases: mobile or immobile molecular machines? PLoS Biol 8:e1000419
-
(2010)
PLoS Biol
, vol.8
, pp. 1000419
-
-
Papantonis, A.1
Larkin, J.D.2
Wada, Y.3
Ohta, Y.4
Ihara, S.5
Kodama, T.6
Cook, P.R.7
-
29
-
-
0034750744
-
Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells
-
DOI 10.1023/A:1012495201697
-
Cremer M, von Hase J, Volm T, Brero A, Kreth G, Walter J, Fischer C, Solovei I, Cremer C, Cremer T (2001) Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells. Chromosome Res 9:541-567 (Pubitemid 33020681)
-
(2001)
Chromosome Research
, vol.9
, Issue.7
, pp. 541-567
-
-
Cremer, M.1
Hase, J.V.2
Volm, T.3
Brero, A.4
Kreth, G.5
Walter, J.6
Fischer, C.7
Solovei, I.8
Cremer, C.9
Cremer, T.10
-
30
-
-
0036795327
-
Conservation of relative chromosome positioning in normal and cancer cells
-
DOI 10.1016/S0960-9822(02)01166-1, PII S0960982202011661
-
Parada LA, McQueen PG, Munson PJ, Misteli T (2002) Conservation of relative chromosome positioning in normal and cancer cells. Curr Biol 12:1692-1697 (Pubitemid 35161925)
-
(2002)
Current Biology
, vol.12
, Issue.19
, pp. 1692-1697
-
-
Parada, L.A.1
McQueen, P.G.2
Munson, P.J.3
Misteli, T.4
-
31
-
-
38349080953
-
Locus-specific and activity-independent gene repositioning during early tumorigenesis
-
2213600 18195100 10.1083/jcb.200708204
-
Meaburn KJ, Misteli T (2008) Locus-specific and activity-independent gene repositioning during early tumorigenesis. J Cell Biol 180:39-50
-
(2008)
J Cell Biol
, vol.180
, pp. 39-50
-
-
Meaburn, K.J.1
Misteli, T.2
-
32
-
-
66149136501
-
The emergence of lineage-specific chromosomal topologies from coordinate gene regulation
-
2654024 19276122 10.1073/pnas.0900986106
-
Rajapakse I, Perlman MD, Scalzo D, Kooperberg C, Groudine M, Kosak ST (2009) The emergence of lineage-specific chromosomal topologies from coordinate gene regulation. Proc Natl Acad Sci USA 106:6679-6684
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 6679-6684
-
-
Rajapakse, I.1
Perlman, M.D.2
Scalzo, D.3
Kooperberg, C.4
Groudine, M.5
Kosak, S.T.6
-
33
-
-
20844433057
-
Transplantation of a multipotent cell population from human adipose tissue induces dystrophin expression in the immunocompetent mdx mouse
-
DOI 10.1084/jem.20042224
-
Rodriguez A-M, Pisani D, Dechesne CA et al (2005) Transplantation of a multipotent cell population from human adipose tissue induces dystrophin expression in the immunocompetent mdx mouse. J Exp Med 201:1397-1405 (Pubitemid 40664084)
-
(2005)
Journal of Experimental Medicine
, vol.201
, Issue.9
, pp. 1397-1405
-
-
Rodriguez, A.-M.1
Pisani, D.2
Dechesne, C.A.3
Turc-Carel, C.4
Kurzenne, J.-Y.5
Wdziekonski, B.6
Villageois, A.7
Bagnis, C.8
Breittmayer, J.-P.9
Groux, H.10
Ailhaud, G.11
Dani, C.12
-
34
-
-
48549087683
-
Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis
-
2492879 18637193 10.1186/1471-2164-9-340
-
Scheideler M, Elabd C, Zaragosi L-E et al (2008) Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis. BMC Genomics 9:340
-
(2008)
BMC Genomics
, vol.9
, pp. 340
-
-
Scheideler, M.1
Elabd, C.2
Zaragosi, L.-E.3
-
36
-
-
69949132008
-
Paraspeckles: Nuclear bodies built on long noncoding RNA
-
2742191 19720872 10.1083/jcb.200906113
-
Bond CS, Fox AH (2009) Paraspeckles: nuclear bodies built on long noncoding RNA. J Cell Biol 186:637-644
-
(2009)
J Cell Biol
, vol.186
, pp. 637-644
-
-
Bond, C.S.1
Fox, A.H.2
-
37
-
-
16844373902
-
PML bodies: A meeting place for genomic loci?
-
DOI 10.1242/jcs.01700
-
Ching RW, Dellaire G, Eskiw CH, Bazett-Jones DP (2005) PML bodies: a meeting place for genomic loci? J Cell Sci 118:847-854 (Pubitemid 40484877)
-
(2005)
Journal of Cell Science
, vol.118
, Issue.5
, pp. 847-854
-
-
Ching, R.W.1
Dellaire, G.2
Eskiw, C.H.3
Bazett-Jones, D.P.4
-
38
-
-
79952601700
-
Biogenesis of nuclear bodies
-
2982170 21068152 10.1101/cshperspect.a000711
-
Dundr M, Misteli T (2010) Biogenesis of nuclear bodies. Cold Spring Harb Perspect Biol 2:a000711
-
(2010)
Cold Spring Harb Perspect Biol
, vol.2
, pp. 000711
-
-
Dundr, M.1
Misteli, T.2
-
39
-
-
0024561487
-
5,6-Dichloro-1-β-D-ribofuranosylbenzimidazole inhibits transcription elongation by RNA polymerase II in vitro
-
Chodosh LA, Fire A, Samuels M, Sharp PA (1989) 5,6-Dichloro-1-beta-D- ribofuranosylbenzimidazole inhibits transcription elongation by RNA polymerase II in vitro. J Biol Chem 264:2250-2257 (Pubitemid 19057700)
-
(1989)
Journal of Biological Chemistry
, vol.264
, Issue.4
, pp. 2250-2257
-
-
Chodosh, L.A.1
Fire, A.2
Samuels, M.3
Sharp, P.A.4
-
40
-
-
0026725368
-
Control of formation of two distinct classes of RNA polymerase II elongation complexes
-
364379 1569941
-
Marshall NF, Price DH (1992) Control of formation of two distinct classes of RNA polymerase II elongation complexes. Mol Cell Biol 12:2078-2090
-
(1992)
Mol Cell Biol
, vol.12
, pp. 2078-2090
-
-
Marshall, N.F.1
Price, D.H.2
-
41
-
-
79958701393
-
Inhibiting eukaryotic transcription: Which compound to choose? How to evaluate its activity?
-
3173647 21922053 10.4161/trns.2.3.16172
-
Bensaude O (2011) Inhibiting eukaryotic transcription: which compound to choose? How to evaluate its activity? Transcription 2:103-108
-
(2011)
Transcription
, vol.2
, pp. 103-108
-
-
Bensaude, O.1
-
42
-
-
33646729244
-
Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
-
1440941 16623600 10.1371/journal.pbio.0040138
-
Branco MR, Pombo A (2006) Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol 4:e138
-
(2006)
PLoS Biol
, vol.4
, pp. 138
-
-
Branco, M.R.1
Pombo, A.2
-
43
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
2858594 19815776 10.1126/science.1181369
-
Lieberman-Aiden E, van Berkum NL, Williams L et al (2009) Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326:289-293
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
Van Berkum, N.L.2
Williams, L.3
-
44
-
-
83755163918
-
Innate structure of DNA foci restricts the mixing of DNA from different chromosome territories
-
3244381 22205925 10.1371/journal.pone.0027527
-
Olivares-Chauvet P, Fennessy D, Jackson DA, Maya-Mendoza A (2011) Innate structure of DNA foci restricts the mixing of DNA from different chromosome territories. PLoS One 6:e27527
-
(2011)
PLoS One
, vol.6
, pp. 27527
-
-
Olivares-Chauvet, P.1
Fennessy, D.2
Jackson, D.A.3
Maya-Mendoza, A.4
-
45
-
-
0032526770
-
The Clk2 and Clk3 dual-specificity protein kinases regulate the intranuclear distribution of SR proteins and influence pre-mRNA splicing
-
DOI 10.1006/excr.1998.4083
-
Duncan PI, Stojdl DF, Marius RM, Scheit KH, Bell JC (1998) The Clk2 and Clk3 dual-specificity protein kinases regulate the intranuclear distribution of SR proteins and influence pre-mRNA splicing. Exp Cell Res 241:300-308 (Pubitemid 28366555)
-
(1998)
Experimental Cell Research
, vol.241
, Issue.2
, pp. 300-308
-
-
Duncan, P.I.1
Stojdl, D.F.2
Marius, R.M.3
Scheit, K.H.4
Bell, J.C.5
-
46
-
-
0037017406
-
Disassembly of interchromatin granule clusters alters the coordination of transcription and pre-mRNA splicing
-
DOI 10.1083/jcb.200107017
-
Sacco-Bubulya P, Spector DL (2002) Disassembly of interchromatin granule clusters alters the coordination of transcription and pre-mRNA splicing. J Cell Biol 156:425-436 (Pubitemid 34839892)
-
(2002)
Journal of Cell Biology
, vol.156
, Issue.3
, pp. 425-436
-
-
Sacco-Bubulya, P.1
Spector, D.L.2
-
47
-
-
84865777822
-
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
-
3431479 22955974 10.1101/gr.134445.111
-
Tilgner H, Knowles DG, Johnson R, Davis CA, Chakrabortty S, Djebali S, Curado J, Snyder M, Gingeras TR, Guigo R (2012) Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs. Genome Res 22:1616-1625
-
(2012)
Genome Res
, vol.22
, pp. 1616-1625
-
-
Tilgner, H.1
Knowles, D.G.2
Johnson, R.3
Davis, C.A.4
Chakrabortty, S.5
Djebali, S.6
Curado, J.7
Snyder, M.8
Gingeras, T.R.9
Guigo, R.10
-
48
-
-
56149098692
-
Three-dimensional positioning of genes in mouse cell nuclei
-
18597102 10.1007/s00412-008-0168-2
-
Hepperger C, Mannes A, Merz J, Peters J, Dietzel S (2008) Three-dimensional positioning of genes in mouse cell nuclei. Chromosoma 117:535-551
-
(2008)
Chromosoma
, vol.117
, pp. 535-551
-
-
Hepperger, C.1
Mannes, A.2
Merz, J.3
Peters, J.4
Dietzel, S.5
-
49
-
-
27344433991
-
Local gene density predicts the spatial position of genetic loci in the interphase nucleus
-
DOI 10.1016/j.yexcr.2005.07.020, PII S0014482705003460
-
Murmann AE, Gao J, Encinosa M, Gautier M, Peter ME, Eils R, Lichter P, Rowley JD (2005) Local gene density predicts the spatial position of genetic loci in the interphase nucleus. Exp Cell Res 311:14-26 (Pubitemid 41527171)
-
(2005)
Experimental Cell Research
, vol.311
, Issue.1
, pp. 14-26
-
-
Murmann, A.E.1
Gao, J.2
Encinosa, M.3
Gautier, M.4
Peter, M.E.5
Eils, R.6
Lichter, P.7
Rowley, J.D.8
-
50
-
-
34248218111
-
Radial chromatin positioning is shaped by local gene density, not by gene expression
-
DOI 10.1007/s00412-007-0098-4
-
Küpper K, Kölbl A, Biener D et al (2007) Radial chromatin positioning is shaped by local gene density, not by gene expression. Chromosoma 116:285-306 (Pubitemid 46712017)
-
(2007)
Chromosoma
, vol.116
, Issue.3
, pp. 285-306
-
-
Kupper, K.1
Kolbl, A.2
Biener, D.3
Dittrich, S.4
Von Hase, J.5
Thormeyer, T.6
Fiegler, H.7
Carter, N.P.8
Speicher, M.R.9
Cremer, T.10
Cremer, M.11
-
51
-
-
0036006293
-
Chromatin motion is constrained by association with nuclear compartments in human cells
-
DOI 10.1016/S0960-9822(02)00695-4, PII S0960982202006954
-
Chubb JR, Boyle S, Perry P, Bickmore WA (2002) Chromatin motion is constrained by association with nuclear compartments in human cells. Curr Biol 12:439-445 (Pubitemid 34248889)
-
(2002)
Current Biology
, vol.12
, Issue.6
, pp. 439-445
-
-
Chubb, J.R.1
Boyle, S.2
Perry, P.3
Bickmore, W.A.4
-
52
-
-
79955569948
-
Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements
-
3083086 21471403 10.1101/gr.111153.110
-
Hakim O, Sung M-H, Voss TC, Splinter E, John S, Sabo PJ, Thurman RE, Stamatoyannopoulos JA, de Laat W, Hager GL (2011) Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements. Genome Res 21:697-706
-
(2011)
Genome Res
, vol.21
, pp. 697-706
-
-
Hakim, O.1
Sung, M.-H.2
Voss, T.C.3
Splinter, E.4
John, S.5
Sabo, P.J.6
Thurman, R.E.7
Stamatoyannopoulos, J.A.8
De Laat, W.9
Hager, G.L.10
-
53
-
-
49449116959
-
The splicing factor SC35 has an active role in transcriptional elongation
-
2574591 18641664 10.1038/nsmb.1461
-
Lin S, Coutinho-Mansfield G, Wang D, Pandit S, Fu X-D (2008) The splicing factor SC35 has an active role in transcriptional elongation. Nat Struct Mol Biol 15:819-826
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 819-826
-
-
Lin, S.1
Coutinho-Mansfield, G.2
Wang, D.3
Pandit, S.4
Fu, X.-D.5
-
54
-
-
47649111278
-
RNA polymerase II activity is located on the surface of protein-rich transcription factories
-
DOI 10.1242/jcs.027250
-
Eskiw CH, Rapp A, Carter DRF, Cook PR (2008) RNA polymerase II activity is located on the surface of protein-rich transcription factories. J Cell Sci 121:1999-2007 (Pubitemid 352015197)
-
(2008)
Journal of Cell Science
, vol.121
, Issue.12
, pp. 1999-2007
-
-
Eskiw, C.H.1
Rapp, A.2
Carter, D.R.F.3
Cook, P.R.4
-
55
-
-
81355146972
-
Ultrastructural study of transcription factories in mouse erythroblasts
-
3215576 22045738 10.1242/jcs.087981
-
Eskiw CH, Fraser P (2011) Ultrastructural study of transcription factories in mouse erythroblasts. J Cell Sci 124:3676-3683
-
(2011)
J Cell Sci
, vol.124
, pp. 3676-3683
-
-
Eskiw, C.H.1
Fraser, P.2
-
56
-
-
84876276025
-
In vivo live imaging of RNA polymerase II transcription factories in primary cells
-
3639417 23592796 10.1101/gad.216200.113
-
Ghamari A, van de Corput MPC, Thongjuea S, van Cappellen WA, van Ijcken W, van Haren J, Soler E, Eick D, Lenhard B, Grosveld FG (2013) In vivo live imaging of RNA polymerase II transcription factories in primary cells. Genes Dev 27:767-777
-
(2013)
Genes Dev
, vol.27
, pp. 767-777
-
-
Ghamari, A.1
Van De Corput, M.P.C.2
Thongjuea, S.3
Van Cappellen, W.A.4
Van Ijcken, W.5
Van Haren, J.6
Soler, E.7
Eick, D.8
Lenhard, B.9
Grosveld, F.G.10
-
57
-
-
75749100247
-
Poised transcription factories prime silent uPA gene prior to activation
-
2797137 20052287 10.1371/journal.pbio.1000270
-
Ferrai C, Xie SQ, Luraghi P, Munari D, Ramirez F, Branco MR, Pombo A, Crippa MP (2010) Poised transcription factories prime silent uPA gene prior to activation. PLoS Biol 8:e1000270
-
(2010)
PLoS Biol
, vol.8
, pp. 1000270
-
-
Ferrai, C.1
Xie, S.Q.2
Luraghi, P.3
Munari, D.4
Ramirez, F.5
Branco, M.R.6
Pombo, A.7
Crippa, M.P.8
-
58
-
-
38149133051
-
Transcription factories are nuclear subcompartments that remain in the absence of transcription
-
2151011 18172162 10.1101/gad.454008
-
Mitchell JA, Fraser P (2008) Transcription factories are nuclear subcompartments that remain in the absence of transcription. Genes Dev 22:20-25
-
(2008)
Genes Dev
, vol.22
, pp. 20-25
-
-
Mitchell, J.A.1
Fraser, P.2
-
59
-
-
84859474968
-
DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes
-
3459314 22314321
-
Hakim O, Resch W, Yamane A et al (2012) DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes. Nature 484:69-74
-
(2012)
Nature
, vol.484
, pp. 69-74
-
-
Hakim, O.1
Resch, W.2
Yamane, A.3
-
60
-
-
39149095948
-
The BCL2 rheostat in glucocorticoid-induced apoptosis of acute lymphoblastic leukemia
-
DOI 10.1038/sj.leu.2405039, PII 2405039
-
Ploner C, Rainer J, Niederegger H, Eduardoff M, Villunger A, Geley S, Kofler R (2008) The BCL2 rheostat in glucocorticoid-induced apoptosis of acute lymphoblastic leukemia. Leukemia 22:370-377 (Pubitemid 351250542)
-
(2008)
Leukemia
, vol.22
, Issue.2
, pp. 370-377
-
-
Ploner, C.1
Rainer, J.2
Niederegger, H.3
Eduardoff, M.4
Villunger, A.5
Geley, S.6
Kofler, R.7
-
61
-
-
33947138649
-
Preservation of large-scale chromatin structure in FISH experiments
-
DOI 10.1007/s00412-006-0084-2
-
Hepperger C, Otten S, von Hase J, Dietzel S (2007) Preservation of large-scale chromatin structure in FISH experiments. Chromosoma 116:117-133 (Pubitemid 46404508)
-
(2007)
Chromosoma
, vol.116
, Issue.2
, pp. 117-133
-
-
Hepperger, C.1
Otten, S.2
Von Hase, J.3
Dietzel, S.4
-
62
-
-
0036349409
-
Spatial preservation of nuclear chromatin architecture during three-dimensional fluorescence in situ hybridization (3D-FISH)
-
DOI 10.1006/excr.2002.5513
-
Solovei I, Cavallo A, Schermelleh L, Jaunin F, Scasselati C, Cmarko D, Cremer C, Fakan S, Cremer T (2002) Spatial preservation of nuclear chromatin architecture during three-dimensional fluorescence in situ hybridization (3D-FISH). Exp Cell Res 276:10-23 (Pubitemid 34948347)
-
(2002)
Experimental Cell Research
, vol.276
, Issue.1
, pp. 10-23
-
-
Solovei, I.1
Cavallo, A.2
Schermelleh, L.3
Jaunin, F.4
Scasselati, C.5
Cmarko, D.6
Cremer, C.7
Fakan, S.8
Cremer, T.9
-
63
-
-
84859845974
-
The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives for studies of nuclear architecture
-
22508100 10.1002/bies.201100176
-
Markaki Y, Smeets D, Fiedler S, Schmid VJ, Schermelleh L, Cremer T, Cremer M (2012) The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives for studies of nuclear architecture. BioEssays 34:412-426
-
(2012)
BioEssays
, vol.34
, pp. 412-426
-
-
Markaki, Y.1
Smeets, D.2
Fiedler, S.3
Schmid, V.J.4
Schermelleh, L.5
Cremer, T.6
Cremer, M.7
-
64
-
-
6344252526
-
Generic features of tertiary chromatin structure as detected in natural chromosomes
-
DOI 10.1128/MCB.24.21.9359-9370.2004
-
Müller WG, Rieder D, Kreth G, Cremer C, Trajanoski Z, McNally JG (2004) Generic features of tertiary chromatin structure as detected in natural chromosomes. Mol Cell Biol 24:9359-9370 (Pubitemid 39391674)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.21
, pp. 9359-9370
-
-
Muller, W.G.1
Rieder, D.2
Kreth, G.3
Cremer, C.4
Trajanoski, Z.5
McNally, J.G.6
-
65
-
-
0026587345
-
Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes
-
1382568 10.1002/gcc.2870040311
-
Telenius H, Pelmear AH, Tunnacliffe A, Carter NP, Behmel A, Ferguson-Smith MA, Nordenskjöld M, Pfragner R, Ponder BA (1992) Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes. Genes Chromosom Cancer 4:257-263
-
(1992)
Genes Chromosom Cancer
, vol.4
, pp. 257-263
-
-
Telenius, H.1
Pelmear, A.H.2
Tunnacliffe, A.3
Carter, N.P.4
Behmel, A.5
Ferguson-Smith, M.A.6
Nordenskjöld, M.7
Pfragner, R.8
Ponder, B.A.9
-
66
-
-
0001921501
-
-
Beatty B, Mai S, Squire J (eds) Oxford University Press
-
Solovei I, Walter J, Cremer M, Habermann F, Schermelleh L, Cremer T (2002) FISH, a practical approach. In: Beatty B, Mai S, Squire J (eds) Oxford University Press, pp 119-157
-
(2002)
FISH, A Practical Approach
, pp. 119-157
-
-
Solovei, I.1
Walter, J.2
Cremer, M.3
Habermann, F.4
Schermelleh, L.5
Cremer, T.6
-
67
-
-
34250763744
-
Organization of chromatin and histone modifications at a transcription site
-
DOI 10.1083/jcb.200703157
-
Müller WG, Rieder D, Karpova TS, John S, Trajanoski Z, McNally JG (2007) Organization of chromatin and histone modifications at a transcription site. J Cell Biol 177:957-967 (Pubitemid 46955701)
-
(2007)
Journal of Cell Biology
, vol.177
, Issue.6
, pp. 957-967
-
-
Muller, W.G.1
Rieder, D.2
Karpova, T.S.3
John, S.4
Trajanoski, Z.5
McNally, J.G.6
-
69
-
-
33750451584
-
The transcriptional regulator CBP has defined spatial associations within interphase nuclei
-
DOI 10.1371/journal.pcbi.0020139
-
McManus KJ, Stephens DA, Adams NM, Islam SA, Freemont PS, Hendzel MJ (2006) The transcriptional regulator CBP has defined spatial associations within interphase nuclei. PLoS Comput Biol 2:e139 (Pubitemid 44656520)
-
(2006)
PLoS Computational Biology
, vol.2
, Issue.10
, pp. 1271-1283
-
-
McManus, K.J.1
Stephens, D.A.2
Adams, N.M.3
Islam, S.A.4
Freemont, P.S.5
Hendzel, M.J.6
|