메뉴 건너뛰기




Volumn 42, Issue 7, 2014, Pages

Super-resolution optical DNA Mapping via DNA methyltransferase-directed click chemistry

Author keywords

[No Author keywords available]

Indexed keywords

ALKYNE; AZIDE; COPPER; DNA METHYLTRANSFERASE; S ADENOSYLMETHIONINE;

EID: 84898945478     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt1406     Document Type: Article
Times cited : (47)

References (48)
  • 1
    • 0029912473 scopus 로고    scopus 로고
    • Karyotyping human chromosomes by combinatorial multi-fluor FISH
    • DOI 10.1038/ng0496-368
    • Speicher, M.R., Ballard, S.G. and Ward, D.C. (1996) Karyotyping human chromosomes by combinatorial multi-fluor FISH. Nat. Genet., 12, 368-375. (Pubitemid 26105926)
    • (1996) Nature Genetics , vol.12 , Issue.4 , pp. 368-375
    • Speicher, M.R.1    Ballard, S.G.2    Ward, D.C.3
  • 2
    • 79952222522 scopus 로고    scopus 로고
    • Optical mapping of DNA: Single-molecule-based methods for mapping genomes
    • Neely, R.K., Deen, J. and Hofkens, J. (2011) Optical mapping of DNA: single-molecule-based methods for mapping genomes. Biopolymers, 95, 298-311.
    • (2011) Biopolymers , vol.95 , pp. 298-311
    • Neely, R.K.1    Deen, J.2    Hofkens, J.3
  • 5
    • 71749093134 scopus 로고    scopus 로고
    • Staphylococcus aureus strain typing by single-molecule DNA mapping in fluidic microchips with fluorescent tags
    • White, E.J., Fridrikh, S.V., Chennagiri, N., Cameron, D.B., Gauvin, G.P. and Gilmanshin, R. (2009) Staphylococcus aureus strain typing by single-molecule DNA mapping in fluidic microchips with fluorescent tags. Clin. Chem., 55, 2121-2129.
    • (2009) Clin. Chem. , vol.55 , pp. 2121-2129
    • White, E.J.1    Fridrikh, S.V.2    Chennagiri, N.3    Cameron, D.B.4    Gauvin, G.P.5    Gilmanshin, R.6
  • 8
    • 77952467722 scopus 로고    scopus 로고
    • DNA in nanochannels-directly visualizing genomic information
    • Persson, F. and Tegenfeldt, J.O. (2010) DNA in nanochannels-directly visualizing genomic information. Chem. Soc. Rev., 39, 985.
    • (2010) Chem. Soc. Rev. , vol.39 , pp. 985
    • Persson, F.1    Tegenfeldt, J.O.2
  • 9
    • 84873545544 scopus 로고    scopus 로고
    • Rapid genome mapping in nanochannel arrays for highly complete and accurate de Novo sequence assembly of the complex aegilops tauschii Genome
    • Hastie, A.R., Dong, L., Smith, A., Finklestein, J., Lam, E.T., Huo, N., Cao, H., Kwok, P.-Y., Deal, K.R., Dvorak, J. et al. (2013) Rapid genome mapping in nanochannel arrays for highly complete and accurate De Novo sequence assembly of the complex aegilops tauschii Genome. PLoS One, 8, e55864.
    • (2013) PLoS One , vol.8
    • Hastie, A.R.1    Dong, L.2    Smith, A.3    Finklestein, J.4    Lam, E.T.5    Huo, N.6    Cao, H.7    Kwok, P.-Y.8    Deal, K.R.9    Dvorak, J.10
  • 11
    • 75549086595 scopus 로고    scopus 로고
    • REBASE-a database for DNA restriction and modification: Enzymes, genes and genomes
    • Roberts, R.J., Vincze, T., Posfai, J. and Macelis, D. (2010) REBASE-a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res., 38, D234-D236.
    • (2010) Nucleic Acids Res. , vol.38
    • Roberts, R.J.1    Vincze, T.2    Posfai, J.3    MacElis, D.4
  • 14
    • 33947201934 scopus 로고    scopus 로고
    • Synthesis of S-adenosyl-L-methionine analogs and their use for sequence-specific transalkylation of DNA by methyltransferases
    • DOI 10.1038/nprot.2006.253, PII NPROT.2006.253
    • Dalhoff, C., Lukinavicius, G., Klimasauskas, S. and Weinhold, E. (2006) Synthesis of S-adenosyl-L-methionine analogs and their use for sequence-specific transalkylation of DNA by methyltransferases. Nat. Protoc., 1, 1879-1886. (Pubitemid 46773308)
    • (2006) Nature Protocols , vol.1 , Issue.4 , pp. 1879-1886
    • Dalhoff, C.1    Lukinavicius, G.2    Klimasauskas, S.3    Weinhold, E.4
  • 15
    • 33645240950 scopus 로고    scopus 로고
    • Direct transfer of extended groups from synthetic cofactors by DNA methyltransferases
    • Dalhoff, C., Lukinavicius, G., Klimasauskas, S. and Weinhold, E. (2006) Direct transfer of extended groups from synthetic cofactors by DNA methyltransferases. Nat. Chem. Biol., 2, 31-32.
    • (2006) Nat. Chem. Biol. , vol.2 , pp. 31-32
    • Dalhoff, C.1    Lukinavicius, G.2    Klimasauskas, S.3    Weinhold, E.4
  • 16
    • 4544260271 scopus 로고    scopus 로고
    • Sequence-specific methyltransferase-induced labeling of DNA (SMILing DNA)
    • DOI 10.1002/cbic.200300739
    • Pljevaljcic, G., Schmidt, F. and Weinhold, E. (2004) Sequence-specific methyltransferase-induced labeling of DNA (SMILing DNA). Chembiochem, 5, 265-269. (Pubitemid 39257118)
    • (2004) ChemBioChem , vol.5 , Issue.3 , pp. 265-269
    • Pljevaljcic, G.1    Schmidt, F.2    Weinhold, E.3
  • 19
    • 84860138251 scopus 로고    scopus 로고
    • DNA extraction method with improved efficiency and specificity using DNA methyltransferase and 'click' chemistry
    • Artyukhin, A.B. and Woo, Y.-H. (2012) DNA extraction method with improved efficiency and specificity using DNA methyltransferase and 'click' chemistry. Anal. Biochem., 425, 169-174.
    • (2012) Anal. Biochem. , vol.425 , pp. 169-174
    • Artyukhin, A.B.1    Woo, Y.-H.2
  • 20
    • 20444477496 scopus 로고    scopus 로고
    • DNA methyltransferase-moderated click chemistry
    • DOI 10.1021/ol0504749
    • Weller, R.L. and Rajski, S.R. (2005) DNA methyltransferase-moderated click chemistry. Org. Lett., 7, 2141-2144. (Pubitemid 40826069)
    • (2005) Organic Letters , vol.7 , Issue.11 , pp. 2141-2144
    • Weller, R.L.1    Rajski, S.R.2
  • 21
    • 84867209414 scopus 로고    scopus 로고
    • Fluorescent DNA labeling by N-mustard analogues of S-Adenosyl-L- Methionine
    • Du, Y., Hendrick, C.E., Frye, K.S. and Comstock, L.R. (2012) Fluorescent DNA labeling by N-mustard analogues of S-Adenosyl-L-Methionine. Chembiochem, 13, 2225-2233.
    • (2012) Chembiochem , vol.13 , pp. 2225-2233
    • Du, Y.1    Hendrick, C.E.2    Frye, K.S.3    Comstock, L.R.4
  • 23
    • 84864957846 scopus 로고    scopus 로고
    • Programmable sequence-specific click-labeling of RNA using archaeal box C/D RNP methyltransferases
    • Tomkuviene, M., Clouet-d'Orval, B., Cerniauskas, I., Weinhold, E. and Klimasauskas, S. (2012) Programmable sequence-specific click-labeling of RNA using archaeal box C/D RNP methyltransferases. Nucleic Acids Res., 40, 6765-6773.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 6765-6773
    • Tomkuviene, M.1    Clouet-D'Orval, B.2    Cerniauskas, I.3    Weinhold, E.4    Klimasauskas, S.5
  • 24
    • 44849104035 scopus 로고    scopus 로고
    • The BsaHI restriction-modification system: Cloning, sequencing and analysis of conserved motifs
    • Neely, R.K. and Roberts, R.J. (2008) The BsaHI restriction-modification system: cloning, sequencing and analysis of conserved motifs. BMC Mol. Biol., 9, 48.
    • (2008) BMC Mol. Biol. , vol.9 , pp. 48
    • Neely, R.K.1    Roberts, R.J.2
  • 25
    • 84878319875 scopus 로고    scopus 로고
    • Localizer: Fast, accurate, open-source, and modular software package for superresolution microscopy
    • Dedecker, P., Duwe, S., Neely, R.K. and Zhang, J. (2012) Localizer: fast, accurate, open-source, and modular software package for superresolution microscopy. J. Biomed. Opt., 17, 126008.
    • (2012) J. Biomed. Opt. , vol.17 , pp. 126008
    • Dedecker, P.1    Duwe, S.2    Neely, R.K.3    Zhang, J.4
  • 28
    • 77949779995 scopus 로고    scopus 로고
    • Click chemistry with DNA
    • El-Sagheer, A.H. and Brown, T. (2010) Click chemistry with DNA. Chem. Soc. Rev., 39, 1388-1405.
    • (2010) Chem. Soc. Rev. , vol.39 , pp. 1388-1405
    • El-Sagheer, A.H.1    Brown, T.2
  • 29
    • 4444324951 scopus 로고    scopus 로고
    • Polytriazoles as copper(I)-stabilizing ligands in catalysis
    • DOI 10.1021/ol0493094
    • Chan, T.R., Hilgraf, R., Sharpless, K.B. and Fokin, V.V. (2004) Polytriazoles as Copper(I)-Stabilizing Ligands in Catalysis. Org. Lett., 6, 2853-2855. (Pubitemid 39178025)
    • (2004) Organic Letters , vol.6 , Issue.17 , pp. 2853-2855
    • Chan, T.R.1    Hilgraf, R.2    Sharpless, K.B.3    Fokin, V.V.4
  • 30
    • 34249794857 scopus 로고    scopus 로고
    • Template-directed oligonucleotide strand ligation, covalent intramolecular DNA circularization and catenation using click chemistry
    • DOI 10.1021/ja070273v
    • Kumar, R., El-Sagheer, A., Tumpane, J., Lincoln, P., Wilhelmsson, L.M. and Brown, T. (2007) Template-directed oligonucleotide strand ligation, covalent intramolecular DNA circularization and catenation using click chemistry. J. Am. Chem. Soc, 129, 6859-6864. (Pubitemid 46847528)
    • (2007) Journal of the American Chemical Society , vol.129 , Issue.21 , pp. 6859-6864
    • Kumar, R.1    El-Sagheer, A.2    Tumpane, J.3    Lincoln, P.4    Wilhelmsson, L.M.5    Brown, T.6
  • 31
    • 77958062290 scopus 로고    scopus 로고
    • Tailored ligand acceleration of the Cu-Catalyzed Azide-Alkyne cycloaddition reaction: Practical and mechanistic implications
    • Presolski, S.I., Hong, V., Cho, S.-H. and Finn, M.G (2010) Tailored ligand acceleration of the Cu-Catalyzed Azide-Alkyne cycloaddition reaction: practical and mechanistic implications. J. Am. Chem. Soc, 132, 14570-14576.
    • (2010) J. Am. Chem. Soc , vol.132 , pp. 14570-14576
    • Presolski, S.I.1    Hong, V.2    Cho, S.-H.3    Finn, M.G.4
  • 32
    • 79957762180 scopus 로고    scopus 로고
    • Labeling substrates of protein arginine methyltransferase with engineered enzymes and matched S-Adenosyl-l-methionine analogues
    • Wang, R., Zheng, W., Yu, H., Deng, H. and Luo, M. (2011) Labeling substrates of protein arginine methyltransferase with engineered enzymes and matched S-Adenosyl-l-methionine analogues. J. Am. Chem. Soc, 133, 7648-7651.
    • (2011) J. Am. Chem. Soc , vol.133 , pp. 7648-7651
    • Wang, R.1    Zheng, W.2    Yu, H.3    Deng, H.4    Luo, M.5
  • 33
    • 65449188232 scopus 로고    scopus 로고
    • Jalview version 2-a multiple sequence alignment editor and analysis workbench
    • Waterhouse, A.M., Procter, J.B., Martin, D.MA., Clamp, M. and Barton, GJ. (2009) Jalview version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.
    • (2009) Bioinformatics , vol.25 , pp. 1189-1191
    • Waterhouse, A.M.1    Procter, J.B.2    Martin, D.M.A.3    Clamp, M.4    Barton, G.J.5
  • 34
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the Web: A case study using the Phyre server
    • Kelley, LA. and Sternberg, M.J.E. (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat. Protoc, 4, 363-371.
    • (2009) Nat. Protoc , vol.4 , pp. 363-371
    • Kelley, L.A.1    Sternberg, M.J.E.2
  • 35
    • 72449154666 scopus 로고    scopus 로고
    • Analysis and optimization of copper-catalyzed Azide-Alkyne cycloaddition for bioconjugation
    • Hong, V., Presolski, S.I., Ma, C. and Finn, M.G (2009) Analysis and optimization of copper-catalyzed Azide-Alkyne cycloaddition for bioconjugation. Angew. Chem. Int. Ed., 48, 9879-9883.
    • (2009) Angew. Chem. Int. Ed. , vol.48 , pp. 9879-9883
    • Hong, V.1    Presolski, S.I.2    Ma, C.3    Finn, M.G.4
  • 36
    • 0027160740 scopus 로고
    • Effects of glutathione and chelating agents on copper-mediated DNA oxidation: Pro-oxidant and antioxidant properties of glutathione
    • DOI 10.1006/abbi.1993.1327
    • Milne, L., Nicotera, P., Orrenius, S. and Burkitt, M.J. (1993) Effects of Glutathione and Chelating Agents on Copper-Mediated DNA Oxidation: Pro-oxidant and Antioxidant Properties of Glutathione. Arch. Biochem. Biophys., 304, 102-109. (Pubitemid 23214159)
    • (1993) Archives of Biochemistry and Biophysics , vol.304 , Issue.1 , pp. 102-109
    • Milne, L.1    Nicotera, P.2    Orrenius, S.3    Burkitt, M.J.4
  • 37
    • 0024458564 scopus 로고
    • Hydroxyl free radical is not the main active species in site-specific DNA damage induced by copper(II) ion and hydrogen peroxide
    • Yamamoto, K. and Kawanishi, S. (1989) Hydroxyl free radical is not the main active species in site-specific DNA damage induced by copper (II) ion and hydrogen peroxide. J. Biol. Chem., 264, 15435-15440. (Pubitemid 19242916)
    • (1989) Journal of Biological Chemistry , vol.264 , Issue.26 , pp. 15435-15440
    • Yamamoto, K.1    Kawanishi, S.2
  • 38
    • 4243545125 scopus 로고    scopus 로고
    • Oxidative nucleobase modifications leading to strand scission
    • Burrows, C.J. and Muller, J.G (1998) Oxidative nucleobase modifications leading to strand scission. Chem. Rev., 98, 1109-1152.
    • (1998) Chem. Rev. , vol.98 , pp. 1109-1152
    • Burrows, C.J.1    Muller, J.G.2
  • 39
    • 84857032212 scopus 로고    scopus 로고
    • Super-resolution fluorescence imaging of chromosomal DNA
    • Zessin, P.J.M., Finan, K. and Heilemann, M. (2012) Super-resolution fluorescence imaging of chromosomal DNA. J. Struct. Biol., 177, 344-348.
    • (2012) J. Struct. Biol. , vol.177 , pp. 344-348
    • Zessin, P.J.M.1    Finan, K.2    Heilemann, M.3
  • 40
    • 33748609388 scopus 로고    scopus 로고
    • Click chemistry as a reliable method for the high-density postsynthetic functionalization of alkyne-modified DNA
    • DOI 10.1021/ol0610946
    • Gierlich, J., Burley, GA., Gramlich, P.M.E., Hammond, D.M. and Carell, T. (2006) Click chemistry as a reliable method for the high-density postsynthetic functionalization of alkyne-modified DNA. Org. Lett., 8, 3639-3642. (Pubitemid 44378327)
    • (2006) Organic Letters , vol.8 , Issue.17 , pp. 3639-3642
    • Gierlich, J.1    Burley, G.A.2    Gramlich, P.M.E.3    Hammond, D.M.4    Carell, T.5
  • 41
    • 84879767390 scopus 로고    scopus 로고
    • Enhanced chemical stability of AdoMet analogues for improved methyltransferase-directed labeling of DNA
    • Lukinavicius, G, Tomkuviene, M., Masevicius, V. and Klimasauskas, S. (2013) Enhanced chemical stability of AdoMet analogues for improved methyltransferase-directed labeling of DNA. ACS Chem. Biol., 8, 1134-1139.
    • (2013) ACS Chem. Biol. , vol.8 , pp. 1134-1139
    • Lukinavicius, G.1    Tomkuviene, M.2    Masevicius, V.3    Klimasauskas, S.4
  • 43
    • 0030820621 scopus 로고    scopus 로고
    • Stability, specificity and fluorescence brightness of multiply-labeled fluorescent DNA probes
    • DOI 10.1093/nar/25.14.2923
    • Randolph, J.B. and Waggoner, A.S. (1997) Stability, specificity and fluorescence brightness of multiply-labeled fluorescent DNA probes. Nucleic Acids Res., 25, 2923-2929. (Pubitemid 27299812)
    • (1997) Nucleic Acids Research , vol.25 , Issue.14 , pp. 2923-2929
    • Randolph, J.B.1    Waggoner, A.S.2
  • 48
    • 84864394611 scopus 로고    scopus 로고
    • Genomic sequencing of uncultured microorganisms from single cells
    • Lasken, R.S. (2012) Genomic sequencing of uncultured microorganisms from single cells. Nat. Rev. Microbiol., 10, 631-640.
    • (2012) Nat. Rev. Microbiol. , vol.10 , pp. 631-640
    • Lasken, R.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.