The phylogenetic placement of eriosporella bambusicola sp nov in capnodiales

Cryptogamie, Mycologie

Volumn 35, Issue 1, 2014, Pages 41-49

  Dai, Dong Qin ^a,b,c,d   Wijayawardene, Nalin N ^a,b   Bhat, D Jayarama ^b,e   Chukeatirote, Ekachai ^b,c   Zhao, Rui Lin ^c   Wang, Yong ^a   Bahkali, Ali H ^f   Hyde, Kevin D ^b,d  

^a GUIZHOU UNIVERSITY   (China)

^b MAE FAH LUANG UNIVERSITY   (Thailand)

^c INSTITUTE OF MICROBIOLOGY   (China)

^d RESEARCH INSTITUTE OF FORESTRY   (China)

^e Azad Housing Society   (India)

^f KING SAUD UNIVERSITY   (Saudi Arabia)

Author keywords

Asexual morphs; Coelomycetous fungi; Multi gene analyses; Taxonomy

Indexed keywords

EID: 84898883945     PISSN: 01811584     EISSN: None     Source Type: Journal    
DOI: 10.7872/crym.v35.iss1.2014.41     Document Type: Article

References (36)

1. BEGOUDE B.A.D., SLIPPERS B., WINGFIELD M.J. & ROUX J., 2010 - Botryosphaeriaceae associated with Terminalia catappa in Cameroon, South Africa and Madagascar. Mycological Progress 9(1): 101-123.
2. BOONMEE S., ZHANG Y., CHOMNUNTI P., CHUKEATIROTE E., TSUI C.K.M., BAHKALI A.H. & HYDE K.D., 2011 - Revision of lignicolous Tubeufiaceae based on morphological re-examination and phylogenetic analysis. Fungal Diversity 51: 63-102.
3. CHEEWANGKOON R., GROENEWALD J., SUMMERELL B., HYDE K.D., TO-ANUN C. & CROUS P.W., 2009 - Myrtaceae, a cache of fungal biodiversity. Persoonia 23: 55-85.
4. CHOMNUNTI P., SCHOCH C.L., AGUIRRE-HUDSON B., KO-KO T.W., HONGSANAN S., JONES E.B.G., KODSUEB R., PHOOKAMSAK R., CHUKEATIROTE E. & BAHKALI A.H., 2011 - Capnodiaceae. Fungal Diversity 51: 103-134.
5. CROUS P.W., SCHOCH C., HYDE K.D., WOOD A., GUEIDAN C., DE HOOG G. & GROENEWALD J., 2009 - Phylogenetic lineages in the Capnodiales. Studies in mycology 64(1): 17-47.
6. CROUS P.W., SUMMERELL B., SHIVAS R., CARNEGIE A. & GROENEWALD J., 2012 - A reappraisal of Harknessia (Diaporthales), and the introduction of Harknessiaceae fam. nov. Persoonia 28: 49-65.
7. DAI D.Q., BHAT D.J., LIU J.K., CHUKEATIROTE E., ZHAO R.L. & HYDE K.D., 2012 - Bambusicola, a new genus from bamboo with asexual and sexual morphs. Cryptogamie Mycologie 33(3): 363-379.
8. HALL T., 2001 - BioEdit version 5.0. 6. North Carolina State University, Department of Microbiology, Raleigh, North Carolina 192.
9. HILLIS D.M. & BULL J.J., 1993 - An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42(2): 182-192.
10. HÖHNEL F. VON, 1916 - Fragmente zur Mykologie no. 944-1000. Sitzungsberichte der Kaiserlichen Akademie der Wissenschaften Math.-naturw. Klasse Abt. I. 125: 27-138.
11. HOYO P. & GOMEZ-BOLEA A., 2004 - Suttoniella arnaudii sp nov (Coelomycetes) on dead leaves of Buxus sempervirens. Mycotaxon 89: 39-46.
12. HYDE K.D., ERIKSSON O.E. & YUE J.Z., 1996 - Roussoëlla, an ascomycete genus of uncertain relationships with a Cytoplea anamorph. Mycological Research 100: 1522-1528.
13. HYDE K.D., UDAYANGA D., MANAMGODA D.S., TEDERSOO L., LARSSON E., ABARENKOV K., BERTRAND Y.J.K., OXELMAN B., HARTMANN M., KAUSERUD H., RYBERG M., KRISTIANSSON E. & NILSSON R.H., 2013a - Incorporating molecular data in fungal systematics: a guide for aspiring researchers. Current Research in Environmental & Applied Mycology 3(1): 1-32.
14. HYDE K.D., JONES E.B.G., LIU J.K., ARIYAWANSA H., BOEHM E., BOONMEE S., BRAUN U., CHOMNUNTI P., CROUS P.W., DAI D.Q., DIEDERICH P., DISSANAYAKE A., DOILOM M., DOVERI F., HONGSANAN S., JAYAWARDENA R., LAWREY J.D., LI Y.M., LI, Y.X., LÜCKING R., MONKAI J., MUGGIA L., NELSEN M.P., PANG K.L., PHOOKAMSAK R., SENANAYAKE I., SHEARER C.A., SUETRONG S., TANAKA K., THAMBUGALA K.M., WIJAYAWARDENE N.N., WIKEE S., WU H.X., ZHANG Y., AGUIRRE-HUDSON B., ALIAS S.A., APTROOT A., BAHKALI A.H., BEZERRA J.L., BHAT, D.J., CAMPORESI E., CHUKEATIROTE E., GUEIDAN C., HAWKSWORTH D.L., HIRAYAMA K., HOOG S.D., KANG J.C., KNUDSEN K., LI W.J., LI X.H., LIU Z.Y., MAPOOK A., MCKENZIE E.H.C., MILLER A.N., MORTIMER P.E., PHILLIPS A.J.L., RAJA H.A., SCHEUER C., SCHUMM F., TAYLOR, J.E., TIAN Q., TIBPROMMA S., WANASINGHE D.N., WANG Y., XU J.C., YAN J.Y., YACHAROEN S. & ZHANG M., 2013 - Families of Dothideomycetes. Fungal Diversity 63: 1-313.
15. KENDRICK B., 2000 - The Fifth Kingdom. 3rd edn. Focus Publishing, Newbury. Massachsetts, USA.
16. KIRK P.M., CANNON P.F., MINTER D.W. & STALPERS J.A., 2008 - Dictionary of the Fungi, 10th edn. CABI, Wallingford.
17. KOHLI D.K. & BACHHAWAT A.K., 2003 - CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics. Nucleic acids research 31(13): 3501-3502.
18. LIU J.K., PHOOKAMSAK R., DOILOM M., WIKEE S., LI Y.M., ARIYAWANSHA H., BOONMEE S., CHOMNUNTI P., DAI D.Q., BHAT J.D., ROMERO A.I., ZHUANG W.Y., MONKAI J., JONES E.B.G., CHUKEATIROTE E., KO-KO W.T., ZHAO Y.C., WANG Y. & HYDE K.D., 2012 - Towards a natural classification of Botryosphaeriales. Fungal Diversity 57: 149-210.
19. LIU J.K., PHOOKAMSAK R., JONES E.B.G., ZHANG Y., KO-KO T.W., HU H.L., BOONMEE S., DOILOM M., CHUKEATIROTE E. & BAHKALI A.H., 2011 - Astrosphaeriella is polyphyletic, with species in Fissuroma gen nov, and Neoastrosphaeriella gen nov Fungal Diversity 51: 135-154.
20. NAG RAJ T.R., 1974- Icones generum coelomycetum VI. University of Waterloo Biology Series 6: 1-41. ? not seen in the text.
21. NAG RAJ T.R., 1993 - Coelomycetous Anamorphs with Appendage-bearing Conidia. Mycologue Publications, Waterloo, Canada.
22. NAG RAJ T.R. & DICOSMO F., 1981 - Icones generum coelomycetum XII. University of Waterloo Biology Series 12: 1-41.
23. PAGE R.D.M., 1996 - TreeView. An application to display phylogenetic trees on personal computer. Comp Computer Applications in the Biosciences 12: 357-358.
24. PHILLIPS A.J.L., ALVES A., PENNYCOOK S.R., JOHNSTON P.R., RAMALEY A., AKULOV A. & CROUS P.W., 2008 - Resolving the phylogenetic and taxonomic status of dark-spored teleomorph genera in the Botryosphaeriaceae. Persoonia 21: 29-55.
25. SCHOCH C.L., SEIFERT K.A., HUHNDORF S., ROBERT V., SPOUGE J.L., LEVESQUE C.A., CHEN W., BOLCHACOVA E., VOIGT K. & CROUS, P.W., 2011 - Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences 109(16): 6241-6246.
26. SILVESTRO D. & MICHALAK I., 2010 - raxmlGUI: a graphical front-end for RAxML. Organisms Diversity & Evolution 12(4): 335-337.
27. SPOONER B.M. & KIRK P.M., 1982 - Taxonomic notes on Excipularia and Scolicosporium. Transactions of the British Mycological Society 78(2): 247-257.
28. STAMATAKIS A., 2006 - RAxML-VI-HPČ: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
29. SUTTON B.C., 1980 - The Coelomycetes-Fungi Imperfecti with Pycnidia, Acervuli and Stromata. Commonwealth Mycological Institute, Kew, UK.
30. SWOFFORD D.L., 2003 - PAUP*: phylogenetic analysis using parsimony, version 4.0 b10.
31. VILGALYS R. & HESTER M., 1990 - Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172(8): 4238-4246.
32. WHITE T., BRUNS T., LEE S. & TAYLOR J., 1990 - Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Academic Press, San Diego, CA, USA. pp. 315-322.
33. WIJAYAWARDENE D.N.N., MCKENZIE E.H.C., CHUKEATIROTE E., WANG Y. & HYDE K.D., 2012a - Coelomycetes. Cryptogamie Mycologie 33(3): 215-244.
34. WIJAYAWARDENE D.N.N., MCKENZIE E.H.C. & HYDE K.D., 2012b - Towards incorporating anamorphic fungi in a natural classification - checklist and notes for 2011. Mycosphere 3(2): 157-228.
35. WIJAYAWARDENE D.N.N., SONG Y., BHAT D.J., MCKENZIE E.H.C., CHUKEATIROTE E., WANG Y. & HYDE K.D., 2013 - Wojnowicia viburni sp nov from China and its phylogenetic placement. Sydowia 65(1): 181-190.
36. WIJAYAWARDENE N.N., CAMPORESI E., BHAT D.J., SONG Y., CHETHANA K.W.T., CHUKEATIROTE E., WANG Y. & HYDE K.D., 2014 - Macrodipodiopsis in Lophiostomataceae, Pleosporales. Phytotaxa (accepted).