CLOURE: Clustal output reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics

Nucleic Acids Research

Volumn 31, Issue 13, 2003, Pages 3501-3502

  Kohli, Davinder K ^a   Bachhawat, Anand K ^a  

^a INSTITUTE OF MICROBIAL TECHNOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEIC ACID; PROTEIN; RIBOSOME RNA;

ACCESS TO INFORMATION; ARTICLE; COMPUTER PROGRAM; GENETIC ANALYSIS; INTERNET; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM; DNA SEQUENCE; METHODOLOGY; PHYLOGENY; SEQUENCE ANALYSIS;

INTERNET; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; RNA, RIBOSOMAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, PROTEIN; SEQUENCE ANALYSIS, RNA; SOFTWARE;

EID: 0042622355     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg502     Document Type: Article

References (7)

1. Higgins,D.G., Thompson,J.D. and Gibson,T.J. (1996) Using CLUSTAL for multiple sequence alignments. Methods Enzymol., 266, 383-402.
2. Jeannmougin,F., Thompson,J.D., Gouy,M., Higgins,D.G. and Gibson,T.J. (1998) Multiple sequence alignment with Clustal X. Trends Biochem. Sci., 23, 403-405.
3. Higgins,D.G. and Sharp,P.M. (1988) CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene, 73, 237-244.
4. Thompson,J.D., Gibson,T.J., Plewniak,F., Jeanmougin,F. and Higgins,D.G. (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
5. Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
6. Nicholas,K.B., Nicholas,H.B.,Jr and Deerfield D.W.,II (1997) GeneDoc: analysis and visualization of genetic variation. Embnet News, 4, 1-4.
7. Clamp,M.E., Cuff,J.A. and Barton,G.J. (1998) Jalview: analysis and manipulation of multiple sequence alignments. Embnet News, 5.4.