-
1
-
-
0037329391
-
Bayes or Bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
-
Alfaro ME, Zoller S, Lutzoni F. 2003. Bayes or Bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution 20: 255-266.
-
(2003)
Molecular Biology and Evolution
, vol.20
, pp. 255-266
-
-
Alfaro, M.E.1
Zoller, S.2
Lutzoni, F.3
-
2
-
-
2942683566
-
-
Mycologia
-
Alves A, Correia A, Luque J, Phillips AJL. 2004. Botryosphaeria corticola, sp. nov. on Quercus species, with notes and description of Botryosphaeria stevensii and its anamorph, Diplodia mutila. Mycologia 96: 598-613.
-
(2004)
Botryosphaeria corticola, sp. nov. on Quercus species, with notes and description of Botryosphaeria stevensii and its anamorph, Diplodia mutila
, vol.96
, pp. 598-613
-
-
Alves, A.1
Correia, A.2
Luque, J.3
Phillips, A.J.L.4
-
3
-
-
33846527379
-
-
Alves A, Correia A, Phillips AJL. 2006. Multi-gene genealogies and morphological data support Diplodia cupressi sp. nov., previously recognized as D. pinea f. sp. cupressi, as a distinct species. Fungal Diversity 23: 1-15.
-
Alves A, Correia A, Phillips AJL. 2006. Multi-gene genealogies and morphological data support Diplodia cupressi sp. nov., previously recognized as D. pinea f. sp. cupressi, as a distinct species. Fungal Diversity 23: 1-15.
-
-
-
-
4
-
-
44449123256
-
Morphological and molecular data reveal cryptic species in Lasiodiplodia theobromae
-
Alves A, Crous PW, Correia A, Phillips AJL. 2008. Morphological and molecular data reveal cryptic species in Lasiodiplodia theobromae. Fungal Diversity 28: 1-13.
-
(2008)
Fungal Diversity
, vol.28
, pp. 1-13
-
-
Alves, A.1
Crous, P.W.2
Correia, A.3
Phillips, A.J.L.4
-
5
-
-
17144428889
-
Evaluation of amplified ribosomal DNA restriction analysis (ARDRA) as a method for the identification of Botryosphaeria species
-
Alves A, Phillips AJL, Henriques I, Correia A. 2005. Evaluation of amplified ribosomal DNA restriction analysis (ARDRA) as a method for the identification of Botryosphaeria species. FEMS Microbiology Letters 245: 221-229.
-
(2005)
FEMS Microbiology Letters
, vol.245
, pp. 221-229
-
-
Alves, A.1
Phillips, A.J.L.2
Henriques, I.3
Correia, A.4
-
6
-
-
58049201241
-
-
Arx JA von, Müller E. 1954. Die Gattungen der amerosporen Pyrenomyceten. Beiträge zur Kryptogamenflora der Schweiz 11: 1-434.
-
Arx JA von, Müller E. 1954. Die Gattungen der amerosporen Pyrenomyceten. Beiträge zur Kryptogamenflora der Schweiz 11: 1-434.
-
-
-
-
7
-
-
58049217999
-
-
Arx JA von, Müller E. 1975. A re-evaluation of the bitunicate ascomycetes with keys to families and genera. Studies in Mycology 9: 1-159.
-
Arx JA von, Müller E. 1975. A re-evaluation of the bitunicate ascomycetes with keys to families and genera. Studies in Mycology 9: 1-159.
-
-
-
-
9
-
-
0001217972
-
The genus Dothidotthia (Botryosphaeriaceae) in North America
-
Barr ME. 1989. The genus Dothidotthia (Botryosphaeriaceae) in North America. Mycotaxon 34: 517-526.
-
(1989)
Mycotaxon
, vol.34
, pp. 517-526
-
-
Barr, M.E.1
-
10
-
-
38749137743
-
-
Burgess TI, Barber PA, Mohali S, Pegg G, Beer W de, Wingfield MJ. 2006. Three new Lasiodiplodia spp. from the tropics, recognized based on DNA sequence comparisons and morphology. Mycologia 98: 423-435.
-
Burgess TI, Barber PA, Mohali S, Pegg G, Beer W de, Wingfield MJ. 2006. Three new Lasiodiplodia spp. from the tropics, recognized based on DNA sequence comparisons and morphology. Mycologia 98: 423-435.
-
-
-
-
11
-
-
0033017973
-
A method for designing primer sets for speciation studies in filamentous ascomycetes
-
Carbone I, Kohn LM. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556.
-
(1999)
Mycologia
, vol.91
, pp. 553-556
-
-
Carbone, I.1
Kohn, L.M.2
-
12
-
-
0040737647
-
Reassessment of the anamorph genera Botryodiplodia, Dothiorella and Fusicoccum
-
Crous PW, Palm ME. 1999. Reassessment of the anamorph genera Botryodiplodia, Dothiorella and Fusicoccum. Sydowia 52: 167-175.
-
(1999)
Sydowia
, vol.52
, pp. 167-175
-
-
Crous, P.W.1
Palm, M.E.2
-
13
-
-
33748099163
-
Phylogenetic lineages in the Botryosphaeriaceae
-
Crous PW, Slippers B, Wingfield MJ, Rheeder J, Marasas WFO, Phillips AJL, Alves A, Burgess T, Barber P, Groenewald JZ. 2006. Phylogenetic lineages in the Botryosphaeriaceae. Studies in Mycology 55: 235-253.
-
(2006)
Studies in Mycology
, vol.55
, pp. 235-253
-
-
Crous, P.W.1
Slippers, B.2
Wingfield, M.J.3
Rheeder, J.4
Marasas, W.F.O.5
Phillips, A.J.L.6
Alves, A.7
Burgess, T.8
Barber, P.9
Groenewald, J.Z.10
-
14
-
-
38149090287
-
Botryosphaeriaceae as potential pathogens of Prunus in South Africa, with descriptions of Diplodia africana and Lasiodiplodia plurivora sp. nov
-
Damm U, Crous PW, Fourie PH. 2007. Botryosphaeriaceae as potential pathogens of Prunus in South Africa, with descriptions of Diplodia africana and Lasiodiplodia plurivora sp. nov. Mycologia 99: 664-680.
-
(2007)
Mycologia
, vol.99
, pp. 664-680
-
-
Damm, U.1
Crous, P.W.2
Fourie, P.H.3
-
15
-
-
0034405041
-
An overview of the taxonomic history of Botryosphaeria, and a re-evaluation of its anamorphs based on morphology and ITS rDNA phylogeny
-
Denman S, Crous PW, Taylor JE, Kang J-C, Pascoe I, Wingfield MJ. 2000. An overview of the taxonomic history of Botryosphaeria, and a re-evaluation of its anamorphs based on morphology and ITS rDNA phylogeny. Studies in Mycology 45: 129-140.
-
(2000)
Studies in Mycology
, vol.45
, pp. 129-140
-
-
Denman, S.1
Crous, P.W.2
Taylor, J.E.3
Kang, J.-C.4
Pascoe, I.5
Wingfield, M.J.6
-
16
-
-
0028969372
-
Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes
-
Glass NL, Donaldson GC. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61: 1323-1330.
-
(1995)
Applied and Environmental Microbiology
, vol.61
, pp. 1323-1330
-
-
Glass, N.L.1
Donaldson, G.C.2
-
17
-
-
0001322342
-
A contribution to the life-history, parasitism and biology of Botryosphaeria ribis. New York Agricultural Experimental Station
-
Grossenbacher JG, Duggar BM. 1911. A contribution to the life-history, parasitism and biology of Botryosphaeria ribis. New York Agricultural Experimental Station, Technical Bulletin 18: 113-190.
-
(1911)
Technical Bulletin
, vol.18
, pp. 113-190
-
-
Grossenbacher, J.G.1
Duggar, B.M.2
-
18
-
-
25144503891
-
Seed-borne Botryosphaeria spp. from native Prunus and Podocarpus trees in Ethiopia, with a description of the anamorph Diplodia rosulata sp. nov
-
Gure A, Slippers B, Stenlid J. 2005. Seed-borne Botryosphaeria spp. from native Prunus and Podocarpus trees in Ethiopia, with a description of the anamorph Diplodia rosulata sp. nov. Mycological Research 109: 1005-1014.
-
(2005)
Mycological Research
, vol.109
, pp. 1005-1014
-
-
Gure, A.1
Slippers, B.2
Stenlid, J.3
-
19
-
-
12044253190
-
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
-
Hillis DM, Bull JJ. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182-192.
-
(1993)
Systematic Biology
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
20
-
-
0031928348
-
Comparison of cultural and morphological characters and ITS sequences in anamorphs of Botryosphaeria and related taxa
-
Jacobs KA, Rehner SA. 1998. Comparison of cultural and morphological characters and ITS sequences in anamorphs of Botryosphaeria and related taxa. Mycologia 90: 601-610.
-
(1998)
Mycologia
, vol.90
, pp. 601-610
-
-
Jacobs, K.A.1
Rehner, S.A.2
-
21
-
-
33644747393
-
Botryosphaeria viticola sp. nov. on grapevines: A new species with a Dothiorella anamorph
-
Luque J, Martos S, Phillips AJL. 2005. Botryosphaeria viticola sp. nov. on grapevines: a new species with a Dothiorella anamorph. Mycologia 97: 1111-1121.
-
(2005)
Mycologia
, vol.97
, pp. 1111-1121
-
-
Luque, J.1
Martos, S.2
Phillips, A.J.L.3
-
22
-
-
6044276713
-
Using phylogenetic species recognition to delimit species boundaries within Leptosphaeria
-
Miller AN, Huhndorf SM. 2004. Using phylogenetic species recognition to delimit species boundaries within Leptosphaeria. Mycologia 96: 1106-1127.
-
(2004)
Mycologia
, vol.96
, pp. 1106-1127
-
-
Miller, A.N.1
Huhndorf, S.M.2
-
23
-
-
4444322133
-
-
Niekerk JM van, Crous PW, Groenewald JZ, Fourie PH, Halleen F. 2004. DNA phylogeny, morphology and pathogenicity of Botryosphaeria species on grapevines. Mycologia 96: 781-798.
-
Niekerk JM van, Crous PW, Groenewald JZ, Fourie PH, Halleen F. 2004. DNA phylogeny, morphology and pathogenicity of Botryosphaeria species on grapevines. Mycologia 96: 781-798.
-
-
-
-
24
-
-
0001116362
-
Fusarium and its near relatives
-
Reynolds DR, Taylor JW eds, CAB International, Wallingford, UK
-
O'Donnell K. 1993. Fusarium and its near relatives. In: Reynolds DR, Taylor JW (eds), The fungal holomorph: Mitotic, meiotic and pleomorphic speciation in fungal systematics: 225-233. CAB International, Wallingford, UK.
-
(1993)
The fungal holomorph: Mitotic, meiotic and pleomorphic speciation in fungal systematics
, pp. 225-233
-
-
O'Donnell, K.1
-
25
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
Page RD. 1996. TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357-358.
-
(1996)
Computer Applications in the Biosciences
, vol.12
, pp. 357-358
-
-
Page, R.D.1
-
26
-
-
20144387457
-
Lasiodiplodia gonubiensis sp. nov., a new Botryosphaeria anamorph from native Syzygium cordatum in South Africa
-
Pavlic D, Slippers B, Coutinho TA, Gryzenhout M, Wingfield MJ. 2004. Lasiodiplodia gonubiensis sp. nov., a new Botryosphaeria anamorph from native Syzygium cordatum in South Africa. Studies in Mycology 50: 313-322.
-
(2004)
Studies in Mycology
, vol.50
, pp. 313-322
-
-
Pavlic, D.1
Slippers, B.2
Coutinho, T.A.3
Gryzenhout, M.4
Wingfield, M.J.5
-
28
-
-
3743097208
-
Beiträge zur Pilzeflora von Sierra Leone.
-
Petrak F, Deighton FC. 1952. Beiträge zur Pilzeflora von Sierra Leone. Sydowia 6: 309-322.
-
(1952)
Sydowia
, vol.6
, pp. 309-322
-
-
Petrak, F.1
Deighton, F.C.2
-
29
-
-
56749120290
-
Botryosphaeria species associated with diseases of grapevines in Portugal
-
Phillips AJL. 2002. Botryosphaeria species associated with diseases of grapevines in Portugal. Phytopathologia Mediterranea 41: 3-18.
-
(2002)
Phytopathologia Mediterranea
, vol.41
, pp. 3-18
-
-
Phillips, A.J.L.1
-
30
-
-
17144415036
-
Two new species of Botryosphaeria with brown, 1-septate ascospores and Dothiorella anamorphs
-
Phillips AJL, Alves A, Correia A, Luque J. 2005. Two new species of Botryosphaeria with brown, 1-septate ascospores and Dothiorella anamorphs. Mycologia 97: 513-529.
-
(2005)
Mycologia
, vol.97
, pp. 513-529
-
-
Phillips, A.J.L.1
Alves, A.2
Correia, A.3
Luque, J.4
-
31
-
-
0010050626
-
Studies on Sphaeropsidales in culture
-
Punithalingam E. 1969. Studies on Sphaeropsidales in culture. Mycological Papers 119: 1-24.
-
(1969)
Mycological Papers
, vol.119
, pp. 1-24
-
-
Punithalingam, E.1
-
32
-
-
33745048057
-
The connection of Dothidotthia aspera (Botryosphaeriaceae) to a hyphomycetous anamorphic fungus, Thyrostroma negundinis
-
Ramaley AW. 2005. The connection of Dothidotthia aspera (Botryosphaeriaceae) to a hyphomycetous anamorphic fungus, Thyrostroma negundinis. Mycotaxon 94: 127-132.
-
(2005)
Mycotaxon
, vol.94
, pp. 127-132
-
-
Ramaley, A.W.1
-
33
-
-
0029818407
-
Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
-
Rannala B, Yang Z. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43: 304-311.
-
(1996)
Journal of Molecular Evolution
, vol.43
, pp. 304-311
-
-
Rannala, B.1
Yang, Z.2
-
34
-
-
0000218755
-
Characteristics of the Fusicoccum anamorph of Boryosphaeria ribis, a potential biological control agent for Melaleuca quinquernervia in South Florida
-
Rayachhetry MB, Blakeslee GM, Webb RS, Kimbrough JW. 1996. Characteristics of the Fusicoccum anamorph of Boryosphaeria ribis, a potential biological control agent for Melaleuca quinquernervia in South Florida. Mycologia 88: 239-248.
-
(1996)
Mycologia
, vol.88
, pp. 239-248
-
-
Rayachhetry, M.B.1
Blakeslee, G.M.2
Webb, R.S.3
Kimbrough, J.W.4
-
36
-
-
0041386108
-
MrBayes3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. 2003. MrBayes3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
37
-
-
33748101292
-
Towards a single scientific name for species of fungi
-
Rossman AY, Samuels GJ. 2005. Towards a single scientific name for species of fungi. Inoculum 56: 3-6.
-
(2005)
Inoculum
, vol.56
, pp. 3-6
-
-
Rossman, A.Y.1
Samuels, G.J.2
-
38
-
-
1542274746
-
Fungi Veneti novi vel critici vel Mycologiae Venetae addendi
-
Saccardo PA. 1877. Fungi Veneti novi vel critici vel Mycologiae Venetae addendi. Michelia 1: 1-72.
-
(1877)
Michelia
, vol.1
, pp. 1-72
-
-
Saccardo, P.A.1
-
39
-
-
0343329317
-
Fungi gallici, ser. II
-
Saccardo PA. 1880. Fungi gallici, ser. II. Michelia 2: 38-135.
-
(1880)
Michelia
, vol.2
, pp. 38-135
-
-
Saccardo, P.A.1
-
40
-
-
33846573892
-
A multigene phylogeny of the Dothideomycetes using four nuclear loci
-
Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Crous PW. 2006. A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98: 1041-1052.
-
(2006)
Mycologia
, vol.98
, pp. 1041-1052
-
-
Schoch, C.L.1
Shoemaker, R.A.2
Seifert, K.A.3
Hambleton, S.4
Spatafora, J.W.5
Crous, P.W.6
-
42
-
-
0001111871
-
Two species of Physalospora on Citrus and other hosts
-
Stevens NE. 1926. Two species of Physalospora on Citrus and other hosts. Mycologia 18: 206-217.
-
(1926)
Mycologia
, vol.18
, pp. 206-217
-
-
Stevens, N.E.1
-
43
-
-
0001866375
-
Coelomycetes. IV. Nomenclature of generic names proposed for Coelomycetes
-
Sutton BC. 1977. Coelomycetes. IV. Nomenclature of generic names proposed for Coelomycetes. Mycological Papers 141: 1-253.
-
(1977)
Mycological Papers
, vol.141
, pp. 1-253
-
-
Sutton, B.C.1
-
45
-
-
58049207332
-
-
Swofford DL. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods) Version 4. Sunderland, Massachusetts: Sinauer Associates
-
Swofford DL. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods) Version 4. Sunderland, Massachusetts: Sinauer Associates.
-
-
-
-
48
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleaic Acids Research 25: 4876-4882.
-
(1997)
Nucleaic Acids Research
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
49
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
Innis MA, Gelfand DH, Sninsky JJ, White TJ eds, Academic Press, San Diego, California, USA
-
White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds), PCR Protocols: a guide to methods and applications: 315-322. Academic Press, San Diego, California, USA.
-
(1990)
PCR Protocols: A guide to methods and applications
, pp. 315-322
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.4
-
50
-
-
0642309746
-
GapCoder automates the use of indel characters in phylogenetic analysis
-
art. 6
-
Young ND, Healey J. 2003. GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics 4: art. 6.
-
(2003)
BMC Bioinformatics
, vol.4
-
-
Young, N.D.1
Healey, J.2
-
52
-
-
0034769806
-
Primers for amplification of mt SSU rDNA, and a phylogenetic study of Botryosphaeria and associated anamorphic fungi
-
Zhou S, Stanosz GR. 2001. Primers for amplification of mt SSU rDNA, and a phylogenetic study of Botryosphaeria and associated anamorphic fungi. Mycological Research 105: 1033-1044.
-
(2001)
Mycological Research
, vol.105
, pp. 1033-1044
-
-
Zhou, S.1
Stanosz, G.R.2
|