메뉴 건너뛰기




Volumn 21, Issue , 2008, Pages 29-55

Resolving the phylogenetic and taxonomic status of dark-spored teleomorph genera in the Botryosphaeriaceae

Author keywords

Barriopsis; Diplodia; Dothiorella; EF1 ; ITS; Lasiodiplodia; LSU; Neodeightonia; Phaeobotryon; Phaeobotryosphaeria; Phylogeny; Spencermartinsia; Sphaeropsis; SSU

Indexed keywords

BOTRYOSPHAERIA; BOTRYOSPHAERIACEAE; DIPLODIA; DOTHIORELLA; LASIODIPLODIA; PLEOSPORALES; SPHAEROPSIS;

EID: 58049209935     PISSN: 00315850     EISSN: None     Source Type: Journal    
DOI: 10.3767/003158508X340742     Document Type: Article
Times cited : (292)

References (52)
  • 1
    • 0037329391 scopus 로고    scopus 로고
    • Bayes or Bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
    • Alfaro ME, Zoller S, Lutzoni F. 2003. Bayes or Bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution 20: 255-266.
    • (2003) Molecular Biology and Evolution , vol.20 , pp. 255-266
    • Alfaro, M.E.1    Zoller, S.2    Lutzoni, F.3
  • 3
    • 33846527379 scopus 로고    scopus 로고
    • Alves A, Correia A, Phillips AJL. 2006. Multi-gene genealogies and morphological data support Diplodia cupressi sp. nov., previously recognized as D. pinea f. sp. cupressi, as a distinct species. Fungal Diversity 23: 1-15.
    • Alves A, Correia A, Phillips AJL. 2006. Multi-gene genealogies and morphological data support Diplodia cupressi sp. nov., previously recognized as D. pinea f. sp. cupressi, as a distinct species. Fungal Diversity 23: 1-15.
  • 4
    • 44449123256 scopus 로고    scopus 로고
    • Morphological and molecular data reveal cryptic species in Lasiodiplodia theobromae
    • Alves A, Crous PW, Correia A, Phillips AJL. 2008. Morphological and molecular data reveal cryptic species in Lasiodiplodia theobromae. Fungal Diversity 28: 1-13.
    • (2008) Fungal Diversity , vol.28 , pp. 1-13
    • Alves, A.1    Crous, P.W.2    Correia, A.3    Phillips, A.J.L.4
  • 5
    • 17144428889 scopus 로고    scopus 로고
    • Evaluation of amplified ribosomal DNA restriction analysis (ARDRA) as a method for the identification of Botryosphaeria species
    • Alves A, Phillips AJL, Henriques I, Correia A. 2005. Evaluation of amplified ribosomal DNA restriction analysis (ARDRA) as a method for the identification of Botryosphaeria species. FEMS Microbiology Letters 245: 221-229.
    • (2005) FEMS Microbiology Letters , vol.245 , pp. 221-229
    • Alves, A.1    Phillips, A.J.L.2    Henriques, I.3    Correia, A.4
  • 6
    • 58049201241 scopus 로고    scopus 로고
    • Arx JA von, Müller E. 1954. Die Gattungen der amerosporen Pyrenomyceten. Beiträge zur Kryptogamenflora der Schweiz 11: 1-434.
    • Arx JA von, Müller E. 1954. Die Gattungen der amerosporen Pyrenomyceten. Beiträge zur Kryptogamenflora der Schweiz 11: 1-434.
  • 7
    • 58049217999 scopus 로고    scopus 로고
    • Arx JA von, Müller E. 1975. A re-evaluation of the bitunicate ascomycetes with keys to families and genera. Studies in Mycology 9: 1-159.
    • Arx JA von, Müller E. 1975. A re-evaluation of the bitunicate ascomycetes with keys to families and genera. Studies in Mycology 9: 1-159.
  • 9
    • 0001217972 scopus 로고
    • The genus Dothidotthia (Botryosphaeriaceae) in North America
    • Barr ME. 1989. The genus Dothidotthia (Botryosphaeriaceae) in North America. Mycotaxon 34: 517-526.
    • (1989) Mycotaxon , vol.34 , pp. 517-526
    • Barr, M.E.1
  • 10
    • 38749137743 scopus 로고    scopus 로고
    • Burgess TI, Barber PA, Mohali S, Pegg G, Beer W de, Wingfield MJ. 2006. Three new Lasiodiplodia spp. from the tropics, recognized based on DNA sequence comparisons and morphology. Mycologia 98: 423-435.
    • Burgess TI, Barber PA, Mohali S, Pegg G, Beer W de, Wingfield MJ. 2006. Three new Lasiodiplodia spp. from the tropics, recognized based on DNA sequence comparisons and morphology. Mycologia 98: 423-435.
  • 11
    • 0033017973 scopus 로고    scopus 로고
    • A method for designing primer sets for speciation studies in filamentous ascomycetes
    • Carbone I, Kohn LM. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556.
    • (1999) Mycologia , vol.91 , pp. 553-556
    • Carbone, I.1    Kohn, L.M.2
  • 12
    • 0040737647 scopus 로고    scopus 로고
    • Reassessment of the anamorph genera Botryodiplodia, Dothiorella and Fusicoccum
    • Crous PW, Palm ME. 1999. Reassessment of the anamorph genera Botryodiplodia, Dothiorella and Fusicoccum. Sydowia 52: 167-175.
    • (1999) Sydowia , vol.52 , pp. 167-175
    • Crous, P.W.1    Palm, M.E.2
  • 14
    • 38149090287 scopus 로고    scopus 로고
    • Botryosphaeriaceae as potential pathogens of Prunus in South Africa, with descriptions of Diplodia africana and Lasiodiplodia plurivora sp. nov
    • Damm U, Crous PW, Fourie PH. 2007. Botryosphaeriaceae as potential pathogens of Prunus in South Africa, with descriptions of Diplodia africana and Lasiodiplodia plurivora sp. nov. Mycologia 99: 664-680.
    • (2007) Mycologia , vol.99 , pp. 664-680
    • Damm, U.1    Crous, P.W.2    Fourie, P.H.3
  • 15
    • 0034405041 scopus 로고    scopus 로고
    • An overview of the taxonomic history of Botryosphaeria, and a re-evaluation of its anamorphs based on morphology and ITS rDNA phylogeny
    • Denman S, Crous PW, Taylor JE, Kang J-C, Pascoe I, Wingfield MJ. 2000. An overview of the taxonomic history of Botryosphaeria, and a re-evaluation of its anamorphs based on morphology and ITS rDNA phylogeny. Studies in Mycology 45: 129-140.
    • (2000) Studies in Mycology , vol.45 , pp. 129-140
    • Denman, S.1    Crous, P.W.2    Taylor, J.E.3    Kang, J.-C.4    Pascoe, I.5    Wingfield, M.J.6
  • 16
    • 0028969372 scopus 로고
    • Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes
    • Glass NL, Donaldson GC. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61: 1323-1330.
    • (1995) Applied and Environmental Microbiology , vol.61 , pp. 1323-1330
    • Glass, N.L.1    Donaldson, G.C.2
  • 17
    • 0001322342 scopus 로고
    • A contribution to the life-history, parasitism and biology of Botryosphaeria ribis. New York Agricultural Experimental Station
    • Grossenbacher JG, Duggar BM. 1911. A contribution to the life-history, parasitism and biology of Botryosphaeria ribis. New York Agricultural Experimental Station, Technical Bulletin 18: 113-190.
    • (1911) Technical Bulletin , vol.18 , pp. 113-190
    • Grossenbacher, J.G.1    Duggar, B.M.2
  • 18
    • 25144503891 scopus 로고    scopus 로고
    • Seed-borne Botryosphaeria spp. from native Prunus and Podocarpus trees in Ethiopia, with a description of the anamorph Diplodia rosulata sp. nov
    • Gure A, Slippers B, Stenlid J. 2005. Seed-borne Botryosphaeria spp. from native Prunus and Podocarpus trees in Ethiopia, with a description of the anamorph Diplodia rosulata sp. nov. Mycological Research 109: 1005-1014.
    • (2005) Mycological Research , vol.109 , pp. 1005-1014
    • Gure, A.1    Slippers, B.2    Stenlid, J.3
  • 19
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis DM, Bull JJ. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182-192.
    • (1993) Systematic Biology , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 20
    • 0031928348 scopus 로고    scopus 로고
    • Comparison of cultural and morphological characters and ITS sequences in anamorphs of Botryosphaeria and related taxa
    • Jacobs KA, Rehner SA. 1998. Comparison of cultural and morphological characters and ITS sequences in anamorphs of Botryosphaeria and related taxa. Mycologia 90: 601-610.
    • (1998) Mycologia , vol.90 , pp. 601-610
    • Jacobs, K.A.1    Rehner, S.A.2
  • 21
    • 33644747393 scopus 로고    scopus 로고
    • Botryosphaeria viticola sp. nov. on grapevines: A new species with a Dothiorella anamorph
    • Luque J, Martos S, Phillips AJL. 2005. Botryosphaeria viticola sp. nov. on grapevines: a new species with a Dothiorella anamorph. Mycologia 97: 1111-1121.
    • (2005) Mycologia , vol.97 , pp. 1111-1121
    • Luque, J.1    Martos, S.2    Phillips, A.J.L.3
  • 22
    • 6044276713 scopus 로고    scopus 로고
    • Using phylogenetic species recognition to delimit species boundaries within Leptosphaeria
    • Miller AN, Huhndorf SM. 2004. Using phylogenetic species recognition to delimit species boundaries within Leptosphaeria. Mycologia 96: 1106-1127.
    • (2004) Mycologia , vol.96 , pp. 1106-1127
    • Miller, A.N.1    Huhndorf, S.M.2
  • 23
    • 4444322133 scopus 로고    scopus 로고
    • Niekerk JM van, Crous PW, Groenewald JZ, Fourie PH, Halleen F. 2004. DNA phylogeny, morphology and pathogenicity of Botryosphaeria species on grapevines. Mycologia 96: 781-798.
    • Niekerk JM van, Crous PW, Groenewald JZ, Fourie PH, Halleen F. 2004. DNA phylogeny, morphology and pathogenicity of Botryosphaeria species on grapevines. Mycologia 96: 781-798.
  • 25
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page RD. 1996. TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357-358.
    • (1996) Computer Applications in the Biosciences , vol.12 , pp. 357-358
    • Page, R.D.1
  • 26
    • 20144387457 scopus 로고    scopus 로고
    • Lasiodiplodia gonubiensis sp. nov., a new Botryosphaeria anamorph from native Syzygium cordatum in South Africa
    • Pavlic D, Slippers B, Coutinho TA, Gryzenhout M, Wingfield MJ. 2004. Lasiodiplodia gonubiensis sp. nov., a new Botryosphaeria anamorph from native Syzygium cordatum in South Africa. Studies in Mycology 50: 313-322.
    • (2004) Studies in Mycology , vol.50 , pp. 313-322
    • Pavlic, D.1    Slippers, B.2    Coutinho, T.A.3    Gryzenhout, M.4    Wingfield, M.J.5
  • 28
    • 3743097208 scopus 로고
    • Beiträge zur Pilzeflora von Sierra Leone.
    • Petrak F, Deighton FC. 1952. Beiträge zur Pilzeflora von Sierra Leone. Sydowia 6: 309-322.
    • (1952) Sydowia , vol.6 , pp. 309-322
    • Petrak, F.1    Deighton, F.C.2
  • 29
    • 56749120290 scopus 로고    scopus 로고
    • Botryosphaeria species associated with diseases of grapevines in Portugal
    • Phillips AJL. 2002. Botryosphaeria species associated with diseases of grapevines in Portugal. Phytopathologia Mediterranea 41: 3-18.
    • (2002) Phytopathologia Mediterranea , vol.41 , pp. 3-18
    • Phillips, A.J.L.1
  • 30
    • 17144415036 scopus 로고    scopus 로고
    • Two new species of Botryosphaeria with brown, 1-septate ascospores and Dothiorella anamorphs
    • Phillips AJL, Alves A, Correia A, Luque J. 2005. Two new species of Botryosphaeria with brown, 1-septate ascospores and Dothiorella anamorphs. Mycologia 97: 513-529.
    • (2005) Mycologia , vol.97 , pp. 513-529
    • Phillips, A.J.L.1    Alves, A.2    Correia, A.3    Luque, J.4
  • 31
    • 0010050626 scopus 로고
    • Studies on Sphaeropsidales in culture
    • Punithalingam E. 1969. Studies on Sphaeropsidales in culture. Mycological Papers 119: 1-24.
    • (1969) Mycological Papers , vol.119 , pp. 1-24
    • Punithalingam, E.1
  • 32
    • 33745048057 scopus 로고    scopus 로고
    • The connection of Dothidotthia aspera (Botryosphaeriaceae) to a hyphomycetous anamorphic fungus, Thyrostroma negundinis
    • Ramaley AW. 2005. The connection of Dothidotthia aspera (Botryosphaeriaceae) to a hyphomycetous anamorphic fungus, Thyrostroma negundinis. Mycotaxon 94: 127-132.
    • (2005) Mycotaxon , vol.94 , pp. 127-132
    • Ramaley, A.W.1
  • 33
    • 0029818407 scopus 로고    scopus 로고
    • Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
    • Rannala B, Yang Z. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43: 304-311.
    • (1996) Journal of Molecular Evolution , vol.43 , pp. 304-311
    • Rannala, B.1    Yang, Z.2
  • 34
    • 0000218755 scopus 로고    scopus 로고
    • Characteristics of the Fusicoccum anamorph of Boryosphaeria ribis, a potential biological control agent for Melaleuca quinquernervia in South Florida
    • Rayachhetry MB, Blakeslee GM, Webb RS, Kimbrough JW. 1996. Characteristics of the Fusicoccum anamorph of Boryosphaeria ribis, a potential biological control agent for Melaleuca quinquernervia in South Florida. Mycologia 88: 239-248.
    • (1996) Mycologia , vol.88 , pp. 239-248
    • Rayachhetry, M.B.1    Blakeslee, G.M.2    Webb, R.S.3    Kimbrough, J.W.4
  • 36
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. 2003. MrBayes3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 37
    • 33748101292 scopus 로고    scopus 로고
    • Towards a single scientific name for species of fungi
    • Rossman AY, Samuels GJ. 2005. Towards a single scientific name for species of fungi. Inoculum 56: 3-6.
    • (2005) Inoculum , vol.56 , pp. 3-6
    • Rossman, A.Y.1    Samuels, G.J.2
  • 38
    • 1542274746 scopus 로고
    • Fungi Veneti novi vel critici vel Mycologiae Venetae addendi
    • Saccardo PA. 1877. Fungi Veneti novi vel critici vel Mycologiae Venetae addendi. Michelia 1: 1-72.
    • (1877) Michelia , vol.1 , pp. 1-72
    • Saccardo, P.A.1
  • 39
    • 0343329317 scopus 로고
    • Fungi gallici, ser. II
    • Saccardo PA. 1880. Fungi gallici, ser. II. Michelia 2: 38-135.
    • (1880) Michelia , vol.2 , pp. 38-135
    • Saccardo, P.A.1
  • 42
    • 0001111871 scopus 로고
    • Two species of Physalospora on Citrus and other hosts
    • Stevens NE. 1926. Two species of Physalospora on Citrus and other hosts. Mycologia 18: 206-217.
    • (1926) Mycologia , vol.18 , pp. 206-217
    • Stevens, N.E.1
  • 43
    • 0001866375 scopus 로고
    • Coelomycetes. IV. Nomenclature of generic names proposed for Coelomycetes
    • Sutton BC. 1977. Coelomycetes. IV. Nomenclature of generic names proposed for Coelomycetes. Mycological Papers 141: 1-253.
    • (1977) Mycological Papers , vol.141 , pp. 1-253
    • Sutton, B.C.1
  • 45
    • 58049207332 scopus 로고    scopus 로고
    • Swofford DL. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods) Version 4. Sunderland, Massachusetts: Sinauer Associates
    • Swofford DL. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods) Version 4. Sunderland, Massachusetts: Sinauer Associates.
  • 48
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleaic Acids Research 25: 4876-4882.
    • (1997) Nucleaic Acids Research , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 49
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky JJ, White TJ eds, Academic Press, San Diego, California, USA
    • White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds), PCR Protocols: a guide to methods and applications: 315-322. Academic Press, San Diego, California, USA.
    • (1990) PCR Protocols: A guide to methods and applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 50
    • 0642309746 scopus 로고    scopus 로고
    • GapCoder automates the use of indel characters in phylogenetic analysis
    • art. 6
    • Young ND, Healey J. 2003. GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics 4: art. 6.
    • (2003) BMC Bioinformatics , vol.4
    • Young, N.D.1    Healey, J.2
  • 52
    • 0034769806 scopus 로고    scopus 로고
    • Primers for amplification of mt SSU rDNA, and a phylogenetic study of Botryosphaeria and associated anamorphic fungi
    • Zhou S, Stanosz GR. 2001. Primers for amplification of mt SSU rDNA, and a phylogenetic study of Botryosphaeria and associated anamorphic fungi. Mycological Research 105: 1033-1044.
    • (2001) Mycological Research , vol.105 , pp. 1033-1044
    • Zhou, S.1    Stanosz, G.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.