Dynamics of nuclear matrix proteome during embryonic development in Drosophila melanogaster

Journal of Biosciences

Volumn 36, Issue 3, 2011, Pages 439-459

  Varma, Parul ^a   Mishra, Rakesh K ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

Embryonic development; nuclear architecture; nuclear matrix; NuMat proteome

Indexed keywords

NUCLEAR MATRIX PROTEIN;

EMBRYONIC DEVELOPMENT; FLY; GENE EXPRESSION; GENETIC ANALYSIS; SPATIOTEMPORAL ANALYSIS;

ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; DEVELOPMENTAL STAGE; DROSOPHILA MELANOGASTER; EMBRYO DEVELOPMENT; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEIN ISOLATION; UNINDEXED SEQUENCE;

ANIMALS; CHROMATOGRAPHY, LIQUID; DROSOPHILA MELANOGASTER; EMBRYONIC DEVELOPMENT; GENE EXPRESSION PROFILING; MASS SPECTROMETRY; NUCLEAR MATRIX; NUCLEAR MATRIX-ASSOCIATED PROTEINS; PROTEOME;

DROSOPHILA MELANOGASTER;

EID: 80054808420     PISSN: 02505991     EISSN: 09737138     Source Type: Journal    
DOI: 10.1007/s12038-011-9081-6     Document Type: Article

References (35)

1. J Albrethsen JC Knol CR Jimenez 2009 Unravelling the nuclear matrix proteome J. Proteomics 72 71 81 18957335 10.1016/j.jprot.2008.09.005 1:CAS:528:DC%2BD1MXitVCktbY%3D
2. B Anachkova V Djeliova G Russev 2005 Nuclear matrix support of DNA replication J. Cell. Biochem. 96 951 961 16167334 10.1002/jcb.20610 1:CAS:528:DC%2BD2MXht1Kgur7F (Pubitemid 41688721)
3. R Berezney DS Coffey 1975 Nuclear protein matrix: association with newly synthesized DNA Science 189 291 293 1145202 10.1126/science.1145202 1:CAS:528:DyaE2MXkvFChur4%3D
4. Berezney R and Coffey DS 1977 Nuclear matrix. Isolation and characterization of a framework structure from rat liver nuclei. J. Cell Biol. 73 616-637 (Pubitemid 8115197)
5. Berezney R and Wei X 1998 The new paradigm: integrating genomic function and nuclear architecture. J. Cell Biochem. Suppl. 30-31 238-242 (Pubitemid 29028746)
6. Bidwell JP, Van Wijnen AJ, Fey EG, Dworetzky S, Penman S, Stein JL, Lian JB and Stein GS 1993 Osteocalcin gene promoter-binding factors are tissue-specific nuclear matrix components. Proc. Natl. Acad. Sci. USA 90 3162-3166 (Pubitemid 23111325)
7. Y Budirahardja P Gonczy 2009 Coupling the cell cycle to development Development 136 2861 2872 19666818 10.1242/dev.021931 1:CAS:528: DC%2BD1MXht1WktrfP
8. DG Capco KM Wan S Penman 1982 The nuclear matrix: three-dimensional architecture and protein composition Cell 29 847 858 7151171 10.1016/0092-8674(82)90446-9 1:CAS:528:DyaL38XkvVOns7s%3D
9. HY Chen JM Sun MJ Hendzel JB Rattner JR Davie 1996 Changes in the nuclear matrix of chicken erythrocytes that accompany maturation Biochem. J. 320 Pt 1 257 265 8947496 1:CAS:528:DyaK28Xnt12qurs%3D (Pubitemid 26400189)
10. JL Chen SH Guo FH Gao 2001 Nuclear matrix in developing rat spermatogenic cells Mol. Reprod. Dev. 59 314 321 11424217 10.1002/mrd.1036 1:CAS:528:DC%2BD3MXktlSqtbk%3D (Pubitemid 32525438)
11. Consortium 2010 The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res. 38 D331-D335
12. Cremer T, Kupper K, Dietzel S and Fakan S 2004 Higher order chromatin architecture in the cell nucleus: on the way from structure to function. Biol. Cell 96 555-567 (Pubitemid 39562231)
13. Davido T and Getzenberg RH 2000 Nuclear matrix proteins as cancer markers. J. Cell Biochem. Suppl. 35 136-141
14. JR Davie 1997 Nuclear matrix dynamic histone acetylation and transcriptionally active chromatin Mol. Biol. Rep. 24 197 207 9291093 10.1023/A:1006811817247 1:CAS:528:DyaK2sXmtVKgur4%3D (Pubitemid 27358373)
15. Degrouard J, Hozak P, Heyman Y and Flechon JE 2004 Nucleoskeleton of early bovine embryos and differentiated somatic cells: an ultrastructural and immunocytochemical comparison. Histochem. Cell Biol. 121 441-451 (Pubitemid 38916432)
16. Dion V, Shimada K and Gasser SM 2010 Actin-related proteins in the nucleus: life beyond chromatin remodelers. Curr. Opin. Cell Biol. 22 383-391
17. Dworetzky SI, Fey EG, Penman S, Lian JB, Stein JL and Stein GS 1990 Progressive changes in the protein composition of the nuclear matrix during rat osteoblast differentiation. Proc. Natl. Acad. Sci. USA 87 4605-4609
18. Dworetzky SI, Wright KL, Fey EG, Penman S, Lian JB, Stein JL and Stein GS 1992 Sequence-specific DNA-binding proteins are components of a nuclear matrix-attachment site. Proc. Natl. Acad. Sci. USA 89 4178-4182
19. CE Eastment RB Scott KR Shelton JL Haar 1981 The role of the nuclear protein matrix during development of rabbit granulocytes Blood 57 747 757 7470625 1:CAS:528:DyaL3MXhvV2nsLo%3D (Pubitemid 11150376)
20. Eng JK, McCormack AL and Yates III, JR 1994 An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrometry 5 976
21. Fey EG and Penman S 1988 Nuclear matrix proteins reflect cell type of origin in cultured human cells. Proc. Natl. Acad. Sci. USA 85 121-125
22. L Ho GR Crabtree 2010 Chromatin remodelling during development Nature (London) 463 474 484 10.1038/nature08911 1:CAS:528:DC%2BC3cXht1Sksrs%3D
23. Jackson DA 2003 The principles of nuclear structure. Chromosome Res. 11 387-401 (Pubitemid 37041200)
24. Jackson DA and Cook PR 1988 Visualization of a filamentous nucleoskeleton with a 23 nm axial repeat. EMBO J. 7 3667-3677
25. Kallappagoudar S, Varma P, Pathak RU, Senthilkumar R and Mishra RK 2010 Nuclear matrix proteome analysis of Drosophila melanogaster. Mol. Cell Proteomics 9 2005-2018
26. C Lanctot T Cheutin M Cremer G Cavalli T Cremer 2007 Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions Nat. Rev. Genet. 8 104 115 17230197 10.1038/nrg2041 1:CAS:528:DC%2BD2sXmt1OmtQ%3D%3D (Pubitemid 46122840)
27. JB Lawrence RH Singer LM Marselle 1989 Highly localized tracks of specific transcripts within interphase nuclei visualized by in situ hybridization Cell 57 493 502 2541917 10.1016/0092-8674(89)90924-0 1:CAS:528:DyaL1MXktVenuro%3D (Pubitemid 19126282)
28. T Misteli 2001 Protein dynamics: implications for nuclear architecture and gene expression Science 291 843 847 11225636 10.1126/science.291.5505.843 1:CAS:528:DC%2BD3MXpslGksA%3D%3D (Pubitemid 32120749)
29. Pathak RU, Rangaraj N, Kallappagoudar S, Mishra K and Mishra RK 2007 Boundary element-associated factor 32 B connects chromatin domains to the nuclear matrix. Mol. Cell Biol. 27 4796-4806 (Pubitemid 47016132)
30. Pritchard DK and Schubiger G 1996 Activation of transcription in Drosophila embryos is a gradual process mediated by the nucleocytoplasmic ratio. Genes Dev. 10 1131-1142 (Pubitemid 26152854)
31. Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Federhen S, et al. 2010 Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 38 D5-16
32. NI S'Iakste TG S'Iakste 2001 Transcription factors and the nuclear matrix Mol. Biol. Mosk. 35 739 749 11605526
33. JM Sun HY Chen DW Litchfield JR Davie 1996 Developmental changes in transcription factors associated with the nuclear matrix of chicken erythrocytes. J. Cell Biochem. 62 454 466 1:CAS:528:DyaK28XmtFSit74%3D (Pubitemid 26333012)
34. Tariq M, Nussbaumer U, Chen Y, Beisel C and Paro R 2009 Trithorax requires Hsp90 for maintenance of active chromatin at sites of gene expression. Proc. Natl. Acad. Sci. USA 106 1157-1162
35. Zeitlin S, Parent A, Silverstein S and Efstratiadis A 1987 Pre-mRNA splicing and the nuclear matrix. Mol. Cell Biol. 7 111-120 (Pubitemid 17230390)