메뉴 건너뛰기




Volumn 9, Issue 9, 2010, Pages 2005-2018

Nuclear matrix proteome analysis of Drosophila melanogaster

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONE; DNA BINDING PROTEIN; PROTEOME; RNA BINDING PROTEIN; TRANSCRIPTION FACTOR;

EID: 77956550525     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M110.001362     Document Type: Article
Times cited : (21)

References (52)
  • 1
    • 0033118342 scopus 로고    scopus 로고
    • Nuclear compartments and gene regulation
    • Cockell, M., and Gasser, S. M. (1999) Nuclear compartments and gene regulation. Curr. Opin. Genet. Dev. 9, 199-205
    • (1999) Curr. Opin. Genet. Dev. , vol.9 , pp. 199-205
    • Cockell, M.1    Gasser, S.M.2
  • 3
    • 9444281491 scopus 로고    scopus 로고
    • Higher order chromatin architecture in the cell nucleus: On the way from structure to function
    • Cremer, T., Küpper, K., Dietzel, S., and Fakan, S. (2004) Higher order chromatin architecture in the cell nucleus: on the way from structure to function. Biol. Cell 96, 555-567
    • (2004) Biol. Cell , vol.96 , pp. 555-567
    • Cremer, T.1    Küpper, K.2    Dietzel, S.3    Fakan, S.4
  • 4
    • 0030443724 scopus 로고    scopus 로고
    • The PML nuclear compartment and cancer
    • Doucas, V., and Evans, R. M. (1996) The PML nuclear compartment and cancer. Biochim. Biophys. Acta 1288, M25-M29
    • (1996) Biochim. Biophys. Acta , vol.1288
    • Doucas, V.1    Evans, R.M.2
  • 5
    • 35649020707 scopus 로고    scopus 로고
    • The perichromatin region: A functional compartment in the nucleus that determines large-scale chromatin folding
    • DOI 10.1016/j.semcdb.2007.08.010, PII S1084952107001255, Membrane Lipid Microdomains: Roles in Signalling and Disease and 3D Chromatin
    • Fakan, S., and van Driel, R. (2007) The perichromatin region: a functional compartment in the nucleus that determines large-scale chromatin folding. Semin. Cell Dev. Biol. 18, 676-681 (Pubitemid 350026434)
    • (2007) Seminars in Cell and Developmental Biology , vol.18 , Issue.5 , pp. 676-681
    • Fakan, S.1    Van Driel, R.2
  • 6
    • 0029122344 scopus 로고
    • Compartmentalization of specific pre-mRNA metabolism: An emerging view
    • Moen, P. T., Jr., Smith, K. P., and Lawrence, J. B. (1995) Compartmentalization of specific pre-mRNA metabolism: an emerging view. Hum. Mol. Genet. 4, 1779-1789
    • (1995) Hum. Mol. Genet. , vol.4 , pp. 1779-1789
    • Moen Jr., P.T.1    Smith, K.P.2    Lawrence, J.B.3
  • 7
    • 0037078322 scopus 로고    scopus 로고
    • Cajal bodies and coilin - Moving towards function
    • Ogg, S. C., and Lamond, A. I. (2002) Cajal bodies and coilin - moving towards function. J. Cell Biol. 159, 17-21
    • (2002) J. Cell Biol. , vol.159 , pp. 17-21
    • Ogg, S.C.1    Lamond, A.I.2
  • 8
    • 0038022718 scopus 로고    scopus 로고
    • Targeting genes and transcription factors to segregated nuclear compartments
    • DOI 10.1016/S0955-0674(03)00052-8
    • Isogai, Y., and Tjian, R. (2003) Targeting genes and transcription factors to segregated nuclear compartments. Curr. Opin. Cell Biol. 15, 296-303 (Pubitemid 36638647)
    • (2003) Current Opinion in Cell Biology , vol.15 , Issue.3 , pp. 296-303
    • Isogai, Y.1    Tjian, R.2
  • 10
    • 0021244964 scopus 로고
    • Epithelial cytoskeletal framework and nuclear matrix-intermediate filament scaffold: Three-dimensional organization and protein composition
    • Fey, E. G., Wan, K. M., and Penman, S. (1984) Epithelial cytoskeletal framework and nuclear matrix-intermediate filament scaffold: three-dimensional organization and protein composition. J. Cell Biol. 98, 1973-1984
    • (1984) J. Cell Biol. , vol.98 , pp. 1973-1984
    • Fey, E.G.1    Wan, K.M.2    Penman, S.3
  • 11
    • 23844469094 scopus 로고    scopus 로고
    • The amazing complexity of transcription factories
    • Jackson, D. A. (2005) The amazing complexity of transcription factories. Brief. Funct. Genomic. Proteomic. 4, 143-157
    • (2005) Brief. Funct. Genomic. Proteomic. , vol.4 , pp. 143-157
    • Jackson, D.A.1
  • 12
    • 0034569590 scopus 로고    scopus 로고
    • Purification of the vertebrate nuclear pore complex by biochemical criteria
    • Miller, B. R., and Forbes, D. J. (2000) Purification of the vertebrate nuclear pore complex by biochemical criteria. Traffic 1, 941-951
    • (2000) Traffic , vol.1 , pp. 941-951
    • Miller, B.R.1    Forbes, D.J.2
  • 13
    • 0023664345 scopus 로고
    • Identification of 100 and 150 S DNA polymerase alpha-primase megacomplexes solubilized from the nuclear matrix of regenerating rat liver
    • Tubo, R. A., and Berezney, R. (1987) Identification of 100 and 150 S DNA polymerase alpha-primase megacomplexes solubilized from the nuclear matrix of regenerating rat liver. J. Biol. Chem. 262, 5857-5865
    • (1987) J. Biol. Chem. , vol.262 , pp. 5857-5865
    • Tubo, R.A.1    Berezney, R.2
  • 14
    • 0017687532 scopus 로고
    • Nuclear matrix. Isolation and characterization of a framework structure from rat liver nuclei
    • Berezney, R., and Coffey, D. S. (1977) Nuclear matrix. Isolation and characterization of a framework structure from rat liver nuclei. J. Cell Biol. 73, 616-637 (Pubitemid 8115197)
    • (1977) Journal of Cell Biology , vol.73 , Issue.3 , pp. 616-637
    • Berezney, R.1    Coffey, D.S.2
  • 15
    • 0141529726 scopus 로고    scopus 로고
    • A proteomic study of the Arabidopsis nuclear matrix
    • DOI 10.1002/jcb.10624
    • Calikowski, T. T., Meulia, T., and Meier, I. (2003) A proteomic study of the Arabidopsis nuclear matrix. J. Cell. Biochem. 90, 361-378 (Pubitemid 37222204)
    • (2003) Journal of Cellular Biochemistry , vol.90 , Issue.2 , pp. 361-378
    • Calikowski, T.T.1    Meulia, T.2    Meier, I.3
  • 17
    • 0029175719 scopus 로고
    • Nuclear matrix proteins as structural and functional components of the mitotic apparatus
    • He, D., Zeng, C., and Brinkley, B. R. (1995) Nuclear matrix proteins as structural and functional components of the mitotic apparatus. Int. Rev. Cytol. 162B, 1-74
    • (1995) Int. Rev. Cytol. , vol.162 B , pp. 1-74
    • He, D.1    Zeng, C.2    Brinkley, B.R.3
  • 18
    • 13444283847 scopus 로고    scopus 로고
    • NMPdb: Database of Nuclear Matrix Proteins
    • Mika, S., and Rost, B. (2005) NMPdb: Database of Nuclear Matrix Proteins. Nucleic Acids Res. 33, D160-D163
    • (2005) Nucleic Acids Res. , vol.33
    • Mika, S.1    Rost, B.2
  • 19
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J. K., McCormack, A. L., and Yates, J. R., 3rd (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 5, 976-989
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates III, J.R.3
  • 20
    • 0020828016 scopus 로고
    • Localization of antigenic determinants in whole Drosophila embryos
    • Mitchison, T. J., and Sedat, J. (1983) Localization of antigenic determinants in whole Drosophila embryos. Dev. Biol. 99, 261-264
    • (1983) Dev. Biol. , vol.99 , pp. 261-264
    • Mitchison, T.J.1    Sedat, J.2
  • 21
    • 34347335677 scopus 로고    scopus 로고
    • Boundary element-associated factor 32B connects chromatin domains to the nuclear matrix
    • Pathak, R. U., Rangaraj, N., Kallappagoudar, S., Mishra, K., and Mishra, R. K. (2007) Boundary element-associated factor 32B connects chromatin domains to the nuclear matrix. Mol. Cell. Biol. 27, 4796-4806
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 4796-4806
    • Pathak, R.U.1    Rangaraj, N.2    Kallappagoudar, S.3    Mishra, K.4    Mishra, R.K.5
  • 23
    • 75849158230 scopus 로고    scopus 로고
    • The Gene Ontology in 2010: Extensions and refinements
    • (2010) The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res. 38, D331-D335
    • Nucleic Acids Res. , vol.38
  • 25
    • 0035997387 scopus 로고    scopus 로고
    • Nuclear actin and actin-related proteins in chromatin remodeling
    • Olave, I. A., Reck-Peterson, S. L., and Crabtree, G. R. (2002) Nuclear actin and actin-related proteins in chromatin remodeling. Annu. Rev. Biochem. 71, 755-781
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 755-781
    • Olave, I.A.1    Reck-Peterson, S.L.2    Crabtree, G.R.3
  • 27
    • 0035833718 scopus 로고    scopus 로고
    • A Drosophila Polycomb group complex includes Zeste and dTAFII proteins
    • Saurin, A. J., Shao, Z., Erdjument-Bromage, H., Tempst, P., and Kingston, R. E. (2001) A Drosophila Polycomb group complex includes Zeste and dTAFII proteins. Nature 412, 655-660
    • (2001) Nature , vol.412 , pp. 655-660
    • Saurin, A.J.1    Shao, Z.2    Erdjument-Bromage, H.3    Tempst, P.4    Kingston, R.E.5
  • 28
    • 0025910086 scopus 로고
    • DNA binding properties of the nuclear matrix and individual nuclear matrix proteins. Evidence for salt-resistant DNA binding sites
    • Hakes, D. J., and Berezney, R. (1991) DNA binding properties of the nuclear matrix and individual nuclear matrix proteins. Evidence for salt-resistant DNA binding sites. J. Biol. Chem. 266, 11131-11140
    • (1991) J. Biol. Chem. , vol.266 , pp. 11131-11140
    • Hakes, D.J.1    Berezney, R.2
  • 29
    • 0025917124 scopus 로고
    • Localization of heterogeneous nuclear ribonucleoprotein in the interphase nuclear matrix core filaments and on perichromosomal filaments at mitosis
    • He, D. C., Martin, T., and Penman, S. (1991) Localization of heterogeneous nuclear ribonucleoprotein in the interphase nuclear matrix core filaments and on perichromosomal filaments at mitosis. Proc. Natl. Acad. Sci. U.S.A. 88, 7469-7473 (Pubitemid 21915173)
    • (1991) Proceedings of the National Academy of Sciences of the United States of America , vol.88 , Issue.17 , pp. 7469-7473
    • Dacheng, H.E.1    Martin, T.2    Penman, S.3
  • 30
    • 0018582191 scopus 로고
    • Isolation and characterization of the nuclear matrix in Friend erythroleukemia cells: Chromatin and hnRNA interactions with the nuclear matrix
    • Long, B. H., Huang, C. Y., and Pogo, A. O. (1979) Isolation and characterization of the nuclear matrix in Friend erythroleukemia cells: chromatin and hnRNA interactions with the nuclear matrix. Cell 18, 1079-1090
    • (1979) Cell , vol.18 , pp. 1079-1090
    • Long, B.H.1    Huang, C.Y.2    Pogo, A.O.3
  • 33
    • 0035459790 scopus 로고    scopus 로고
    • Transcription factors and the nuclear matrix
    • S'Iakste, N. I., and S'Iakste, T. G. (2001) Transcription factors and the nuclear matrix. Mol. Biol. 35, 739-749
    • (2001) Mol. Biol. , vol.35 , pp. 739-749
    • S'Iakste, N.I.1    S'Iakste, T.G.2
  • 34
    • 49049116818 scopus 로고    scopus 로고
    • Mitotic partitioning of transcription factors
    • Delcuve, G. P., He, S., and Davie, J. R. (2008) Mitotic partitioning of transcription factors. J. Cell. Biochem. 105, 1-8
    • (2008) J. Cell. Biochem. , vol.105 , pp. 1-8
    • Delcuve, G.P.1    He, S.2    Davie, J.R.3
  • 35
    • 37049184934 scopus 로고
    • Looking for Cancer in Nuclear Matrix Proteins
    • Travis, J. (1993) Looking for Cancer in Nuclear Matrix Proteins. Science 259, 1258
    • (1993) Science , vol.259 , pp. 1258
    • Travis, J.1
  • 36
    • 16844372528 scopus 로고    scopus 로고
    • Birth of a nucleolus: The evolution of nucleolar compartments
    • Thiry, M., and Lafontaine, D. L. (2005) Birth of a nucleolus: the evolution of nucleolar compartments. Trends Cell Biol. 15, 194-199
    • (2005) Trends Cell Biol. , vol.15 , pp. 194-199
    • Thiry, M.1    Lafontaine, D.L.2
  • 37
    • 0035698491 scopus 로고    scopus 로고
    • Small heat shock protein p26 associates with nuclear lamins and HSP70 in nuclei and nuclear matrix fractions from stressed cells
    • Willsie, J. K., and Clegg, J. S. (2002) Small heat shock protein p26 associates with nuclear lamins and HSP70 in nuclei and nuclear matrix fractions from stressed cells. J. Cell. Biochem. 84, 601-614
    • (2002) J. Cell. Biochem. , vol.84 , pp. 601-614
    • Willsie, J.K.1    Clegg, J.S.2
  • 38
    • 0032985539 scopus 로고    scopus 로고
    • Reassembling proteins and chaperones in human nuclear matrix protein fractions
    • DOI 10.1002/(SICI)1097-4644(19990801)74:2<145::AID-JCB1>3.0.CO;2-#
    • Gerner, C., Holzmann, K., Meissner, M., Gotzmann, J., Grimm, R., and Sauermann, G. (1999) Reassembling proteins and chaperones in human nuclear matrix protein fractions. J. Cell. Biochem. 74, 145-151 (Pubitemid 29307705)
    • (1999) Journal of Cellular Biochemistry , vol.74 , Issue.2 , pp. 145-151
    • Gerner, C.1    Holzmann, K.2    Meissner, M.3    Gotzmann, J.4    Grimm, R.5    Sauermann, G.6
  • 39
    • 59049083922 scopus 로고    scopus 로고
    • Trithorax requires Hsp90 for maintenance of active chromatin at sites of gene expression
    • Tariq, M., Nussbaumer, U., Chen, Y., Beisel, C., and Paro, R. (2009) Trithorax requires Hsp90 for maintenance of active chromatin at sites of gene expression. Proc. Natl. Acad. Sci. U.S.A. 106, 1157-1162
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 1157-1162
    • Tariq, M.1    Nussbaumer, U.2    Chen, Y.3    Beisel, C.4    Paro, R.5
  • 40
    • 0026730882 scopus 로고
    • A differential location of phosphoinositide kinases, diacylglycerol kinase, and phospholipase C in the nuclear matrix
    • Payrastre, B., Nievers, M., Boonstra, J., Breton, M., Verkleij, A. J., and Van Bergen en Henegouwen, P. M. (1992) A differential location of phosphoinositide kinases, diacylglycerol kinase, and phospholipase C in the nuclear matrix. J. Biol. Chem. 267, 5078-5084
    • (1992) J. Biol. Chem. , vol.267 , pp. 5078-5084
    • Payrastre, B.1    Nievers, M.2    Boonstra, J.3    Breton, M.4    Verkleij, A.J.5    Van Bergen En Henegouwen, P.M.6
  • 42
    • 0040860278 scopus 로고
    • In situ localization of DNA topoisomerase II, a major polypeptide component of the Drosophila nuclear matrix fraction
    • Berrios, M., Osheroff, N., and Fisher, P. A. (1985) In situ localization of DNA topoisomerase II, a major polypeptide component of the Drosophila nuclear matrix fraction. Proc. Natl. Acad. Sci. U.S.A. 82, 4142-4146
    • (1985) Proc. Natl. Acad. Sci. U.S.A. , vol.82 , pp. 4142-4146
    • Berrios, M.1    Osheroff, N.2    Fisher, P.A.3
  • 43
    • 0023885651 scopus 로고
    • Changes in structure and protein composition of bovine lymphocyte nuclear matrix during concanavalin-A-induced mitogenesis
    • Bladon, T., Brasch, K., Brown, D. L., and Setterfield, G. (1988) Changes in structure and protein composition of bovine lymphocyte nuclear matrix during concanavalin-A-induced mitogenesis. Biochem. Cell Biol. 66, 40-53
    • (1988) Biochem. Cell Biol. , vol.66 , pp. 40-53
    • Bladon, T.1    Brasch, K.2    Brown, D.L.3    Setterfield, G.4
  • 44
    • 0023704381 scopus 로고
    • Nuclear matrix proteins reflect cell type of origin in cultured human cells
    • Fey, E. G., and Penman, S. (1988) Nuclear matrix proteins reflect cell type of origin in cultured human cells. Proc. Natl. Acad. Sci. U.S.A. 85, 121-125
    • (1988) Proc. Natl. Acad. Sci. U.S.A. , vol.85 , pp. 121-125
    • Fey, E.G.1    Penman, S.2
  • 45
    • 0024561176 scopus 로고
    • The protein composition of the nuclear matrix of murine P19 embryonal carcinoma cells is differentiation-stage dependent
    • DOI 10.1016/0014-4827(89)90072-4
    • Stuurman, N., Van Driel, R., De Jong, L., Meijne, A. M., and Van Renswoude, J. (1989) The protein composition of the nuclear matrix of murine P19 embryonal carcinoma cells is differentiation-stage dependent. Exp. Cell Res. 180, 460-466 (Pubitemid 19051553)
    • (1989) Experimental Cell Research , vol.180 , Issue.2 , pp. 460-466
    • Stuurman, N.1    Van Driel, R.2    De Jong, L.3    Meijne, A.M.L.4    Van Renswoude, J.5
  • 49
    • 13844266228 scopus 로고    scopus 로고
    • Novel components of human mitotic chromosomes identified by proteomic analysis of the chromosome scaffold fraction
    • Gassmann, R., Henzing, A. J., and Earnshaw, W. C. (2005) Novel components of human mitotic chromosomes identified by proteomic analysis of the chromosome scaffold fraction. Chromosoma 113, 385-397
    • (2005) Chromosoma , vol.113 , pp. 385-397
    • Gassmann, R.1    Henzing, A.J.2    Earnshaw, W.C.3
  • 50
    • 0029841504 scopus 로고    scopus 로고
    • Dynamic continuity of nuclear and mitotic matrix proteins in the cell cycle
    • Mancini, M. A., He, D., Ouspenski, II, and Brinkley, B. R. (1996) Dynamic continuity of nuclear and mitotic matrix proteins in the cell cycle. J. Cell. Biochem. 62, 158-164
    • (1996) J. Cell. Biochem. , vol.62 , pp. 158-164
    • Mancini, M.A.1    He, D.2    Ouspenski, I.I.3    Brinkley, B.R.4
  • 52
    • 34247468356 scopus 로고    scopus 로고
    • Genes required for mitotic spindle assembly in Drosophila S2 cells
    • DOI 10.1126/science.1141314
    • Goshima, G., Wollman, R., Goodwin, S. S., Zhang, N., Scholey, J. M., Vale, R. D., and Stuurman, N. (2007) Genes required for mitotic spindle assembly in Drosophila S2 cells. Science 316, 417-421 (Pubitemid 46651486)
    • (2007) Science , vol.316 , Issue.5823 , pp. 417-421
    • Goshima, G.1    Wollman, R.2    Goodwin, S.S.3    Zhang, N.4    Scholey, J.M.5    Vale, R.D.6    Stuurman, N.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.