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Volumn 111, Issue 15, 2014, Pages 5538-5543

A frameshifting stimulatory stem loop destabilizes the hybrid state and impedes ribosomal translocation

Author keywords

Mrna Secondary Structure; Programmed Ribosomal Frameshifting; Ribosomal Dynamics; Single Molecule Fret

Indexed keywords

ELONGATION FACTOR G; MESSENGER RNA; PEPTIDYLTRANSFERASE; TRANSFER RNA;

EID: 84898802217     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1403457111     Document Type: Article
Times cited : (89)

References (44)
  • 1
    • 70350654363 scopus 로고    scopus 로고
    • What recent ribosome structures have revealed about the mechanism of translation
    • Schmeing TM, Ramakrishnan V (2009) What recent ribosome structures have revealed about the mechanism of translation. Nature 461(7268):1234-1242.
    • (2009) Nature , vol.461 , Issue.7268 , pp. 1234-1242
    • Schmeing, T.M.1    Ramakrishnan, V.2
  • 2
    • 77953625418 scopus 로고    scopus 로고
    • Structure and dynamics of a processive brownian motor: The translating ribosome
    • Frank J, Gonzalez RL, Jr. (2010) Structure and dynamics of a processive Brownian motor: The translating ribosome. Annu Rev Biochem 79:381-412.
    • (2010) Annu Rev Biochem , vol.79 , pp. 381-412
    • Frank, J.1    Gonzalez Jr., R.L.2
  • 3
    • 84861381646 scopus 로고    scopus 로고
    • How should we think about the ribosome?
    • Moore PB (2012) How should we think about the ribosome? Annu Rev Biophys 41: 1-19.
    • (2012) Annu Rev Biophys , vol.41 , pp. 1-19
    • Moore, P.B.1
  • 4
    • 0027104840 scopus 로고
    • Translational accuracy and the fitness of bacteria
    • Kurland CG (1992) Translational accuracy and the fitness of bacteria. Annu Rev Genet 26:29-50.
    • (1992) Annu Rev Genet , vol.26 , pp. 29-50
    • Kurland, C.G.1
  • 5
    • 0029870925 scopus 로고    scopus 로고
    • Programmed translational frameshifting
    • Farabaugh PJ (1996) Programmed translational frameshifting. Microbiol Rev 60(1): 103-134.
    • (1996) Microbiol Rev , vol.60 , Issue.1 , pp. 103-134
    • Farabaugh, P.J.1
  • 6
    • 0029896020 scopus 로고    scopus 로고
    • Recoding: Dynamic reprogramming of translation
    • Gesteland RF, Atkins JF (1996) Recoding: Dynamic reprogramming of translation. Annu Rev Biochem 65:741-768.
    • (1996) Annu Rev Biochem , vol.65 , pp. 741-768
    • Gesteland, R.F.1    Atkins, J.F.2
  • 7
    • 59749098821 scopus 로고    scopus 로고
    • Frameshifting rna pseudoknots: Structure and mechanism
    • Giedroc DP, Cornish PV (2009) Frameshifting RNA pseudoknots: Structure and mechanism. Virus Res 139(2):193-208.
    • (2009) Virus Res , vol.139 , Issue.2 , pp. 193-208
    • Giedroc, D.P.1    Cornish, P.V.2
  • 8
    • 33646779223 scopus 로고    scopus 로고
    • Programmed ribosomal frameshifting in hiv-1 and the sars-cov
    • Brierley I, Dos Ramos FJ (2006) Programmed ribosomal frameshifting in HIV-1 and the SARS-CoV. Virus Res 119(1):29-42.
    • (2006) Virus Res , vol.119 , Issue.1 , pp. 29-42
    • Brierley, I.1    Dos Ramos, F.J.2
  • 9
    • 0028007434 scopus 로고
    • Rrna-mrna base pairing stimulates a programmed-1 ribosomal frameshift
    • Larsen B, Wills NM, Gesteland RF, Atkins JF (1994) rRNA-mRNA base pairing stimulates a programmed-1 ribosomal frameshift. J Bacteriol 176(22):6842-6851.
    • (1994) J Bacteriol , vol.176 , Issue.22 , pp. 6842-6851
    • Larsen, B.1    Wills, N.M.2    Gesteland, R.F.3    Atkins, J.F.4
  • 10
    • 0025355475 scopus 로고
    • Translational frameshifting generates the gamma subunit of dna polymerase iii holoenzyme
    • Tsuchihashi Z, Kornberg A (1990) Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme. Proc Natl Acad Sci USA 87(7):2516-2520.
    • (1990) Proc Natl Acad Sci USA , vol.87 , Issue.7 , pp. 2516-2520
    • Tsuchihashi, Z.1    Kornberg, A.2
  • 11
    • 0026594057 scopus 로고
    • Sequence requirements for efficient translational frameshifting in the escherichia coli dnax gene and the role of an unstable interaction between trna(lys) and an aag lysine codon
    • Tsuchihashi Z, Brown PO (1992) Sequence requirements for efficient translational frameshifting in the Escherichia coli dnaX gene and the role of an unstable interaction between tRNA(Lys) and an AAG lysine codon. Genes Dev 6(3):511-519.
    • (1992) Genes Dev , vol.6 , Issue.3 , pp. 511-519
    • Tsuchihashi, Z.1    Brown, P.O.2
  • 12
    • 0031559590 scopus 로고    scopus 로고
    • Structural probing and mutagenic analysis of the stem-loop required for escherichia coli dnax ribosomal frameshifting: Programmed efficiency of 50%
    • Larsen B, Gesteland RF, Atkins JF (1997) Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: Programmed efficiency of 50%. J Mol Biol 271(1):47-60.
    • (1997) J Mol Biol , vol.271 , Issue.1 , pp. 47-60
    • Larsen, B.1    Gesteland, R.F.2    Atkins, J.F.3
  • 13
    • 84884916953 scopus 로고    scopus 로고
    • Frameshifting dynamics
    • Tinoco I, Jr., Kim HK, Yan S (2013) Frameshifting dynamics. Biopolymers 99(12): 1147-1166.
    • (2013) Biopolymers , vol.99 , Issue.12 , pp. 1147-1166
    • Tinoco Jr., I.1    Kim, H.K.2    Yan, S.3
  • 14
    • 84860231100 scopus 로고    scopus 로고
    • The anti-shine-dalgarno sequence drives translational pausing and codon choice in bacteria
    • Li GW, Oh E, Weissman JS (2012) The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 484(7395):538-541.
    • (2012) Nature , vol.484 , Issue.7395 , pp. 538-541
    • Li, G.W.1    Oh, E.2    Weissman, J.S.3
  • 15
    • 0035200990 scopus 로고    scopus 로고
    • Ribosomal pausing at a frameshifter rna pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency
    • Kontos H, Napthine S, Brierley I (2001) Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency. Mol Cell Biol 21(24):8657-8670.
    • (2001) Mol Cell Biol , vol.21 , Issue.24 , pp. 8657-8670
    • Kontos, H.1    Napthine, S.2    Brierley, I.3
  • 16
    • 0027494569 scopus 로고
    • Ribosomal pausing during translation of an rna pseudoknot
    • Somogyi P, Jenner AJ, Brierley I, Inglis SC (1993) Ribosomal pausing during translation of an RNA pseudoknot. Mol Cell Biol 13(11):6931-6940.
    • (1993) Mol Cell Biol , vol.13 , Issue.11 , pp. 6931-6940
    • Somogyi, P.1    Jenner, A.J.2    Brierley, I.3    Inglis, S.C.4
  • 17
    • 0026733573 scopus 로고
    • Ribosomal movement impeded at a pseudoknot required for frameshifting
    • Tu C, Tzeng TH, Bruenn JA (1992) Ribosomal movement impeded at a pseudoknot required for frameshifting. Proc Natl Acad Sci USA 89(18):8636-8640.
    • (1992) Proc Natl Acad Sci USA , vol.89 , Issue.18 , pp. 8636-8640
    • Tu, C.1    Tzeng, T.H.2    Bruenn, J.A.3
  • 18
    • 0033984933 scopus 로고    scopus 로고
    • Kinetics of ribosomal pausing during programmed-1 translational frameshifting
    • Lopinski JD, Dinman JD, Bruenn JA (2000) Kinetics of ribosomal pausing during programmed-1 translational frameshifting. Mol Cell Biol 20(4):1095-1103.
    • (2000) Mol Cell Biol , vol.20 , Issue.4 , pp. 1095-1103
    • Lopinski, J.D.1    Dinman, J.D.2    Bruenn, J.A.3
  • 19
    • 84855291528 scopus 로고    scopus 로고
    • Mrna pseudoknot structures can act as ribosomal roadblocks
    • Tholstrup J, Oddershede LB, Sørensen MA (2012) mRNA pseudoknot structures can act as ribosomal roadblocks. Nucleic Acids Res 40(1):303-313.
    • (2012) Nucleic Acids Res , vol.40 , Issue.1 , pp. 303-313
    • Tholstrup, J.1    Oddershede, L.B.2    Sørensen, M.A.3
  • 20
    • 84867036862 scopus 로고    scopus 로고
    • Programmed-1 frameshifting efficiency correlates with rna pseudoknot conformational plasticity, not resistance to mechanical unfolding
    • Ritchie DB, Foster DA, Woodside MT (2012) Programmed-1 frameshifting efficiency correlates with RNA pseudoknot conformational plasticity, not resistance to mechanical unfolding. Proc Natl Acad Sci USA 109(40):16167-16172.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.40 , pp. 16167-16172
    • Ritchie, D.B.1    Foster, D.A.2    Woodside, M.T.3
  • 21
    • 84873637807 scopus 로고    scopus 로고
    • HIV-1 frameshift efficiency is primarily determined by the stability of base pairs positioned at the mRNA entrance channel of the ribosome
    • Mouzakis KD, Lang AL, Vander Meulen KA, Easterday PD, Butcher SE (2013) HIV-1 frameshift efficiency is primarily determined by the stability of base pairs positioned at the mRNA entrance channel of the ribosome. Nucleic Acids Res 41(3):1901-1913.
    • (2013) Nucleic Acids Res , vol.41 , Issue.3 , pp. 1901-1913
    • Mouzakis, K.D.1    Lang, A.L.2    Vander Meulen, K.A.3    Easterday, P.D.4    Butcher, S.E.5
  • 22
    • 79953199843 scopus 로고    scopus 로고
    • The ribosome as a molecular machine: The mechanism of trna-mrna movement in translocation
    • Rodnina MV, Wintermeyer W (2011) The ribosome as a molecular machine: The mechanism of tRNA-mRNA movement in translocation. Biochem Soc Trans 39(2): 658-662.
    • (2011) Biochem Soc Trans , vol.39 , Issue.2 , pp. 658-662
    • Rodnina, M.V.1    Wintermeyer, W.2
  • 23
    • 0037963475 scopus 로고    scopus 로고
    • Locking and unlocking of ribosomal motions
    • Valle M, et al. (2003) Locking and unlocking of ribosomal motions. Cell 114(1): 123-134.
    • (2003) Cell , vol.114 , Issue.1 , pp. 123-134
    • Valle, M.1
  • 24
    • 84859957285 scopus 로고    scopus 로고
    • Structural characterization of mrna-trna translocation intermediates
    • Agirrezabala X, et al. (2012) Structural characterization of mRNA-tRNA translocation intermediates. Proc Natl Acad Sci USA 109(16):6094-6099.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.16 , pp. 6094-6099
    • Agirrezabala, X.1
  • 25
    • 42949126723 scopus 로고    scopus 로고
    • Coupling of ribosomal l1 stalk and trna dynamics during translation elongation
    • Fei J, Kosuri P, MacDougall DD, Gonzalez RL, Jr. (2008) Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation. Mol Cell 30(3):348-359.
    • (2008) Mol Cell , vol.30 , Issue.3 , pp. 348-359
    • Fei, J.1    Kosuri, P.2    MacDougall, D.D.3    Gonzalez Jr., R.L.4
  • 27
    • 44449125068 scopus 로고    scopus 로고
    • Spontaneous intersubunit rotation in single ribosomes
    • Cornish PV, Ermolenko DN, Noller HF, Ha T (2008) Spontaneous intersubunit rotation in single ribosomes. Mol Cell 30(5):578-588.
    • (2008) Mol Cell , vol.30 , Issue.5 , pp. 578-588
    • Cornish, P.V.1    Ermolenko, D.N.2    Noller, H.F.3    Ha, T.4
  • 28
    • 78649873931 scopus 로고    scopus 로고
    • Head swivel on the ribosome facilitates translocation by means of intra-subunit trna hybrid sites
    • Ratje AH, et al. (2010) Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites. Nature 468(7324):713-716.
    • (2010) Nature , vol.468 , Issue.7324 , pp. 713-716
    • Ratje, A.H.1
  • 29
    • 84870928681 scopus 로고    scopus 로고
    • Rotation of the head of the 30s ribosomal subunit during mrna translocation
    • Guo ZJ, Noller HF (2012) Rotation of the head of the 30S ribosomal subunit during mRNA translocation. Proc Natl Acad Sci USA 109(50):20391-20394.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.50 , pp. 20391-20394
    • Guo, Z.J.1    Noller, H.F.2
  • 30
    • 0038433302 scopus 로고    scopus 로고
    • An elongation factor g-induced ribosome rearrangement precedes trna-mrna translocation
    • Savelsbergh A, et al. (2003) An elongation factor G-induced ribosome rearrangement precedes tRNA-mRNA translocation. Mol Cell 11(6):1517-1523.
    • (2003) Mol Cell , vol.11 , Issue.6 , pp. 1517-1523
    • Savelsbergh, A.1
  • 31
    • 70349470607 scopus 로고    scopus 로고
    • Allosteric collaboration between elongation factor g and the ribosomal l1 stalk directs trna movements during translation
    • Fei J, et al. (2009) Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation. Proc Natl Acad Sci USA 106(37):15702-15707.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.37 , pp. 15702-15707
    • Fei, J.1
  • 32
    • 84879663355 scopus 로고    scopus 로고
    • Elongation factor g bound to the ribosome in an intermediate state of translocation
    • Tourigny DS, Fernández IS, Kelley AC, Ramakrishnan V (2013) Elongation factor G bound to the ribosome in an intermediate state of translocation. Science 340(6140): 1235490.
    • (2013) Science , vol.340 , Issue.6140 , pp. 1235490
    • Tourigny, D.S.1    Fernández, I.S.2    Kelley, A.C.3    Ramakrishnan, V.4
  • 33
    • 0028584414 scopus 로고
    • Determination of the optimal aligned spacing between the shine-dalgarno sequence and the translation initiation codon of escherichia coli mrnas
    • Chen H, Bjerknes M, Kumar R, Jay E (1994) Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs. Nucleic Acids Res 22(23):4953-4957.
    • (1994) Nucleic Acids Res , vol.22 , Issue.23 , pp. 4953-4957
    • Chen, H.1    Bjerknes, M.2    Kumar, R.3    Jay, E.4
  • 34
    • 84886634813 scopus 로고
    • Factorfree ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by escherichia coli ribosomes
    • Gavrilova LP, Kostiashkina OE, Koteliansky VE, Rutkevitch NM, Spirin AS (1976) Factorfree ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes. J Mol Biol 101(4):537-552.
    • (1976) J Mol Biol , vol.101 , Issue.4 , pp. 537-552
    • Gavrilova, L.P.1    Kostiashkina, O.E.2    Koteliansky, V.E.3    Rutkevitch, N.M.4    Spirin, A.S.5
  • 36
    • 84878909556 scopus 로고    scopus 로고
    • Coordinated conformational and compositional dynamics drive ribosome translocation
    • Chen J, Petrov A, Tsai A, O'Leary SE, Puglisi JD (2013) Coordinated conformational and compositional dynamics drive ribosome translocation. Nat Struct Mol Biol 20(6): 718-727.
    • (2013) Nat Struct Mol Biol , vol.20 , Issue.6 , pp. 718-727
    • Chen, J.1    Petrov, A.2    Tsai, A.3    O'Leary, S.E.4    Puglisi, J.D.5
  • 37
    • 33847024820 scopus 로고    scopus 로고
    • Kinetically competent intermediates in the translocation step of protein synthesis
    • Pan D, Kirillov SV, Cooperman BS (2007) Kinetically competent intermediates in the translocation step of protein synthesis. Mol Cell 25(4):519-529.
    • (2007) Mol Cell , vol.25 , Issue.4 , pp. 519-529
    • Pan, D.1    Kirillov, S.V.2    Cooperman, B.S.3
  • 39
    • 85027939461 scopus 로고    scopus 로고
    • Dynamics of translation by single ribosomes through mrna secondary structures
    • Chen C, et al. (2013) Dynamics of translation by single ribosomes through mRNA secondary structures. Nat Struct Mol Biol 20(5):582-588.
    • (2013) Nat Struct Mol Biol , vol.20 , Issue.5 , pp. 582-588
    • Chen, C.1
  • 41
    • 79959676389 scopus 로고    scopus 로고
    • The ribosome uses two active mechanisms to unwind messenger rna during translation
    • Qu X, et al. (2011) The ribosome uses two active mechanisms to unwind messenger RNA during translation. Nature 475(7354):118-121.
    • (2011) Nature , vol.475 , Issue.7354 , pp. 118-121
    • Qu, X.1
  • 42
    • 33646557329 scopus 로고    scopus 로고
    • A mechanical explanation of rna pseudoknot function in programmed ribosomal frameshifting
    • Namy O, Moran SJ, Stuart DI, Gilbert RJ, Brierley I (2006) A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting. Nature 441(7090):244-247.
    • (2006) Nature , vol.441 , Issue.7090 , pp. 244-247
    • Namy, O.1    Moran, S.J.2    Stuart, D.I.3    Gilbert, R.J.4    Brierley, I.5
  • 43
    • 84879625362 scopus 로고    scopus 로고
    • Crystal structures of ef-g-ribosome complexes trapped in intermediate states of translocation
    • Zhou J, Lancaster L, Donohue JP, Noller HF (2013) Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation. Science 340(6140):1236086.
    • (2013) Science , vol.340 , Issue.6140 , pp. 1236086
    • Zhou, J.1    Lancaster, L.2    Donohue, J.P.3    Noller, H.F.4
  • 44
    • 84879661481 scopus 로고    scopus 로고
    • Control of ribosomal subunit rotation by elongation factor g
    • Pulk A, Cate JH (2013) Control of ribosomal subunit rotation by elongation factor G. Science 340(6140):1235970.
    • (2013) Science , vol.340 , Issue.6140 , pp. 1235970
    • Pulk, A.1    Cate, J.H.2


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