-
1
-
-
0023870815
-
Characterization of ribosomal frameshifting in HIV-1 gag-pol expression
-
Jacks,T., Power,M.D., Masiarz,F.R., Luciw,P.A., Barr,P.J. and Varmus,H.E. (1988) Characterization of ribosomal frameshifting in HIV-1 gag-pol expression. Nature, 331, 280-283.
-
(1988)
Nature
, vol.331
, pp. 280-283
-
-
Jacks, T.1
Power, M.D.2
Masiarz, F.R.3
Luciw, P.A.4
Barr, P.J.5
Varmus, H.E.6
-
2
-
-
33646779223
-
Programmed ribosomal frameshifting in HIV-1 and the SARS-CoV
-
Brierley,I. and Dos Ramos,F.J. (2006) Programmed ribosomal frameshifting in HIV-1 and the SARS-CoV. Virus Res., 119, 29-42.
-
(2006)
Virus Res
, vol.119
, pp. 29-42
-
-
Brierley, I.1
Dos Ramos, F.J.2
-
3
-
-
0023512767
-
An efficient ribosomal frame-shifting signal in the polymerase-encoding region of the coronavirus IBV
-
Brierley,I., Boursnell,M.E., Binns,M.M., Bilimoria,B., Blok,V.C., Brown,T.D. and Inglis,S.C. (1987) An efficient ribosomal frame-shifting signal in the polymerase-encoding region of the coronavirus IBV. EMBO J., 6, 3779-3785.
-
(1987)
EMBO J.
, vol.6
, pp. 3779-3785
-
-
Brierley, I.1
Boursnell, M.E.2
Binns, M.M.3
Bilimoria, B.4
Blok, V.C.5
Brown, T.D.6
Inglis, S.C.7
-
4
-
-
0029091681
-
Ribosomal frameshifting on viral RNAs
-
Brierley,I. (1995) Ribosomal frameshifting on viral RNAs. J. Gen. Virol., 76, 1885-1892.
-
(1995)
J. Gen. Virol
, vol.76
, pp. 1885-1892
-
-
Brierley, I.1
-
5
-
-
59749098821
-
Frameshifting RNA pseudoknots: Structure and mechanism
-
Giedroc,D.P. and Cornish,P.V. (2009) Frameshifting RNA pseudoknots: Structure and mechanism. Virus Res., 139, 193-208.
-
(2009)
Virus Res
, vol.139
, pp. 193-208
-
-
Giedroc, D.P.1
Cornish, P.V.2
-
6
-
-
0029870925
-
Programmed translational frameshifting
-
Farabaugh,P.J. (1996) Programmed translational frameshifting. Microbiol. Rev., 60, 103-134.
-
(1996)
Microbiol. Rev
, vol.60
, pp. 103-134
-
-
Farabaugh, P.J.1
-
7
-
-
49349100603
-
RNA pseudoknots and the regulation of protein synthesis
-
Brierley,I., Gilbert,R.J. and Pennell,S. (2008) RNA pseudoknots and the regulation of protein synthesis. Biochem. Soc. Trans., 36, 684-689.
-
(2008)
Biochem. Soc. Trans
, vol.36
, pp. 684-689
-
-
Brierley, I.1
Gilbert, R.J.2
Pennell, S.3
-
8
-
-
0035787892
-
Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting
-
Brierley,I. and Pennell,S. (2001) Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting. Cold Spring Harb. Symp. Quant. Biol., 66, 233-248.
-
(2001)
Cold Spring Harb. Symp. Quant. Biol
, vol.66
, pp. 233-248
-
-
Brierley, I.1
Pennell, S.2
-
9
-
-
0027176380
-
A heptanucleotide sequence mediates ribosomal frameshifting in mammalian cells
-
Reil,H., Kollmus,H., Weidle,U.H. and Hauser,H. (1993) A heptanucleotide sequence mediates ribosomal frameshifting in mammalian cells. J. Virol., 67, 5579-5584.
-
(1993)
J. Virol
, vol.67
, pp. 5579-5584
-
-
Reil, H.1
Kollmus, H.2
Weidle, U.H.3
Hauser, H.4
-
10
-
-
30844443739
-
Decreasing the frameshift efficiency translates into an equivalent reduction of the replication of the human immunodeficiency virus type 1
-
Dulude,D., Berchiche,Y.A., Gendron,K., Brakier-Gingras,L. and Heveker,N. (2006) Decreasing the frameshift efficiency translates into an equivalent reduction of the replication of the human immunodeficiency virus type 1. Virology, 345, 127-136.
-
(2006)
Virology
, vol.345
, pp. 127-136
-
-
Dulude, D.1
Berchiche, Y.A.2
Gendron, K.3
Brakier-Gingras, L.4
Heveker, N.5
-
11
-
-
3342905119
-
A reassessment of the response of the bacterial ribosome to the frameshift stimulatory signal of the human immunodeficiency virus type 1
-
Leger,M., Sidani,S. and Brakier-Gingras,L.E.A. (2004) A reassessment of the response of the bacterial ribosome to the frameshift stimulatory signal of the human immunodeficiency virus type 1. RNA, 10, 1225-1235.
-
(2004)
RNA
, vol.10
, pp. 1225-1235
-
-
Leger, M.1
Sidani, S.2
Brakier-Gingras, L.E.A.3
-
12
-
-
0031901133
-
Importance of ribosomal frameshifting for human immunodeficiency virus type 1 particle assembly and replication
-
Hung,M., Patel,P., Davis,S. and Green,S.R. (1998) Importance of ribosomal frameshifting for human immunodeficiency virus type 1 particle assembly and replication. J. Virol., 72, 4819-4824.
-
(1998)
J. Virol
, vol.72
, pp. 4819-4824
-
-
Hung, M.1
Patel, P.2
Davis, S.3
Green, S.R.4
-
13
-
-
0032553427
-
Characterization of human immunodeficiency virus type-1 (HIV-1) particles hat express protease-reverse transcriptase fusion proteins
-
Cherry,E., Liang,C., Rong,L., Quan,Y., Inouye,P., Li,X., Morin,N., Kotler,M. and Wainberg,M.A. (1998) Characterization of human immunodeficiency virus type-1 (HIV-1) particles hat express protease-reverse transcriptase fusion proteins. J. Mol. Biol., 284, 43-56.
-
(1998)
J. Mol. Biol
, vol.284
, pp. 43-56
-
-
Cherry, E.1
Liang, C.2
Rong, L.3
Quan, Y.4
Inouye, P.5
Li, X.6
Morin, N.7
Kotler, M.8
Wainberg, M.A.9
-
14
-
-
0035138477
-
Maintenance of the Gag/Gag-Pol ratio is important for human immunodeficiency virus type 1 RNA dimerization and viral infectivity
-
Shehu-Xhilaga,M., Crowe,S.M. and Mak,J. (2001) Maintenance of the Gag/Gag-Pol ratio is important for human immunodeficiency virus type 1 RNA dimerization and viral infectivity. J. Virol., 75, 1834-1841.
-
(2001)
J. Virol
, vol.75
, pp. 1834-1841
-
-
Shehu-Xhilaga, M.1
Crowe, S.M.2
Mak, J.3
-
15
-
-
0842304470
-
The human Immunodeficiency virus type 1 ribosomal frameshifting site is an invariant sequence determinant and an important target for antiviral therapy
-
Biswas,P., Jiang,X., Pacchia,A.L., Dougherty,J.P. and Peltz,S.W. (2004) The human Immunodeficiency virus type 1 ribosomal frameshifting site is an invariant sequence determinant and an important target for antiviral therapy. J. Virol., 78, 2082-2087.
-
(2004)
J. Virol
, vol.78
, pp. 2082-2087
-
-
Biswas, P.1
Jiang, X.2
Pacchia, A.L.3
Dougherty, J.P.4
Peltz, S.W.5
-
16
-
-
0027214941
-
Overexpression of the HIV-1 gag-pol polyprotein results in intracellular activation of HIV-1 protease and inhibition of assembly and budding of virus-like particles
-
Karacostas,V., Wolffe,E.J., Nagashima,K., Gonda,M.A. and Moss,B. (1993) Overexpression of the HIV-1 gag-pol polyprotein results in intracellular activation of HIV-1 protease and inhibition of assembly and budding of virus-like particles. Virology, 193, 661-671.
-
(1993)
Virology
, vol.193
, pp. 661-671
-
-
Karacostas, V.1
Wolffe, E.J.2
Nagashima, K.3
Gonda, M.A.4
Moss, B.5
-
17
-
-
0026018243
-
Overexpression of the gag-pol precursor from human immunodeficiency virus type 1 proviral genomes results in efficient proteolytic processing in the absence of virion production
-
Park,J. and Morrow,C.D. (1991) Overexpression of the gag-pol precursor from human immunodeficiency virus type 1 proviral genomes results in efficient proteolytic processing in the absence of virion production. J. Virol., 65, 5111-5117.
-
(1991)
J. Virol
, vol.65
, pp. 5111-5117
-
-
Park, J.1
Morrow, C.D.2
-
18
-
-
0026758711
-
Mutational analysis of the ''slippery-sequence'' component of a coronavirus ribosomal frameshifting signal
-
Brierley,I., Jenner,A.J. and Inglis,S.C. (1992) Mutational analysis of the ''slippery-sequence'' component of a coronavirus ribosomal frameshifting signal. J. Mol. Biol., 227, 463-479.
-
(1992)
J. Mol. Biol
, vol.227
, pp. 463-479
-
-
Brierley, I.1
Jenner, A.J.2
Inglis, S.C.3
-
19
-
-
0035282697
-
Comparative mutational analysis of cis-acting RNA signals for translational frameshifting in HIV-1 and HTLV-2
-
Kim,Y.-G., Maas,S. and Rich,A. (2001) Comparative mutational analysis of cis-acting RNA signals for translational frameshifting in HIV-1 and HTLV-2. Nucleic Acids Res., 29, 1125-1131.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 1125-1131
-
-
Kim, Y.-G.1
Maas, S.2
Rich, A.3
-
20
-
-
0036534459
-
Ribosome structure: Revisiting the connection between translational accuracy and unconventional decoding
-
Stahl,G., McCarty,G.P. and Farabaugh,P.J. (2002) Ribosome structure: revisiting the connection between translational accuracy and unconventional decoding. Trends Biochem. Sci., 27, 178-183.
-
(2002)
Trends Biochem. Sci
, vol.27
, pp. 178-183
-
-
Stahl, G.1
McCarty, G.P.2
Farabaugh, P.J.3
-
21
-
-
0028031976
-
Translational frameshifting at the gag-pol junction of human immunodeficiency virus type 1 is not increased in infected T-lymphoid cells
-
Cassan,M., Delaunay,N., Vaquero,C. and Rousset,J.P. (1994) Translational frameshifting at the gag-pol junction of human immunodeficiency virus type 1 is not increased in infected T-lymphoid cells. J. Virol., 68, 1501-1508.
-
(1994)
J. Virol
, vol.68
, pp. 1501-1508
-
-
Cassan, M.1
Delaunay, N.2
Vaquero, C.3
Rousset, J.P.4
-
22
-
-
0027941188
-
The sequences of and distance between two cis-acting signals determine the efficiency of ribosomal frameshifting in human immunodeficiency virus type 1 and human T-cell leukemia virus type II in vivo
-
Kollmus,H., Honigman,A., Panet,A. and Hauser,H. (1994) The sequences of and distance between two cis-acting signals determine the efficiency of ribosomal frameshifting in human immunodeficiency virus type 1 and human T-cell leukemia virus type II in vivo. J. Virol., 68, 6087-6091.
-
(1994)
J. Virol
, vol.68
, pp. 6087-6091
-
-
Kollmus, H.1
Honigman, A.2
Panet, A.3
Hauser, H.4
-
23
-
-
75649134937
-
Interaction of the HIV-1 frameshift signal with the ribosome
-
Mazauric,M.-H., Seol,Y., Yoshizawa,S., Visscher,K. and Fourmy,D. (2009) Interaction of the HIV-1 frameshift signal with the ribosome. Nucleic Acids Res., 37, 7654-7664.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 7654-7664
-
-
Mazauric, M.-H.1
Seol, Y.2
Yoshizawa, S.3
Visscher, K.4
Fourmy, D.5
-
24
-
-
0036924931
-
Characterization of the frameshift stimulatory signal controlling a programmed -1 ribosomal frameshift in the human immunodeficiency virus type 1
-
Dulude,D., Baril,M. and Brakier-Gingras,L. (2002) Characterization of the frameshift stimulatory signal controlling a programmed -1 ribosomal frameshift in the human immunodeficiency virus type 1. Nucleic Acids Res., 30, 5094-5102.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 5094-5102
-
-
Dulude, D.1
Baril, M.2
Brakier-Gingras, L.3
-
25
-
-
20344397919
-
Solution structure and thermodynamic investigation of the HIV-1 frameshift inducing element
-
Staple,D.W. and Butcher,S.E. (2005) Solution structure and thermodynamic investigation of the HIV-1 frameshift inducing element. J. Mol. Biol., 349, 1011-1023.
-
(2005)
J. Mol. Biol
, vol.349
, pp. 1011-1023
-
-
Staple, D.W.1
Butcher, S.E.2
-
26
-
-
0041660967
-
Solution structure of the HIV-1 frameshift inducing stem-loop RNA
-
Staple,D.W. and Butcher,S.E. (2003) Solution structure of the HIV-1 frameshift inducing stem-loop RNA. Nucleic Acids Res., 31, 4326-4331.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4326-4331
-
-
Staple, D.W.1
Butcher, S.E.2
-
27
-
-
20344371430
-
Structure of the RNA signal essential for translational frameshifting in HIV-1
-
Gaudin,C., Mazauric,M.-H., Traikia,M., Guittet,E., Yoshizawa,S. and Fourmy,D. (2005) Structure of the RNA signal essential for translational frameshifting in HIV-1. J. Mol. Biol., 349, 1024-1035.
-
(2005)
J. Mol. Biol
, vol.349
, pp. 1024-1035
-
-
Gaudin, C.1
Mazauric, M.-H.2
Traikia, M.3
Guittet, E.4
Yoshizawa, S.5
Fourmy, D.6
-
28
-
-
0141631892
-
Efficiency of a programmed -1 ribosomal frameshift in the different subtypes of the human immunodeficiency virus type 1 group M
-
Baril,M., Dulude,D., Gendron,K., Lemay,G. and Brakier-Gingras,L. (2003) Efficiency of a programmed -1 ribosomal frameshift in the different subtypes of the human immunodeficiency virus type 1 group M. RNA, 9, 1246-1253.
-
(2003)
RNA
, vol.9
, pp. 1246-1253
-
-
Baril, M.1
Dulude, D.2
Gendron, K.3
Lemay, G.4
Brakier-Gingras, L.5
-
29
-
-
0026717107
-
Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: Demonstration by expression in vivo
-
Parkin,N.T., Chamorro,M. and Varmus,H.E. (1992) Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: demonstration by expression in vivo. J. Virol., 66, 5147-5151.
-
(1992)
J. Virol
, vol.66
, pp. 5147-5151
-
-
Parkin, N.T.1
Chamorro, M.2
Varmus, H.E.3
-
30
-
-
0030880945
-
In vivo HIV-1 frameshifting efficiency is directly related to the stability of the stem-loop stimulatory signal
-
Bidou,L., Stahl,G., Grima,B., Liu,H., Cassan,M. and Rousset,J.P. (1997) In vivo HIV-1 frameshifting efficiency is directly related to the stability of the stem-loop stimulatory signal. RNA, 3, 1153-1158.
-
(1997)
RNA
, vol.3
, pp. 1153-1158
-
-
Bidou, L.1
Stahl, G.2
Grima, B.3
Liu, H.4
Cassan, M.5
Rousset, J.P.6
-
31
-
-
0037316485
-
The 9-A solution: How mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting
-
Plant,E.P., Jacobs,K.L.M., Harger,J.W., Meskauskas,A., Jacobs,J.L., Baxter,J.L., Petrov,A.N. and Dinman,J.D. (2003) The 9-A solution: How mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting. RNA, 9, 168-174.
-
(2003)
RNA
, vol.9
, pp. 168-174
-
-
Plant, E.P.1
Jacobs, K.L.M.2
Harger, J.W.3
Meskauskas, A.4
Jacobs, J.L.5
Baxter, J.L.6
Petrov, A.N.7
Dinman, J.D.8
-
32
-
-
33646557329
-
A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting
-
Namy,O., Moran,S.J., Stuart,D.I., Gilbert,R.J.C. and Brierley,I. (2006) A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting. Nature, 441, 244-247.
-
(2006)
Nature
, vol.441
, pp. 244-247
-
-
Namy, O.1
Moran, S.J.2
Stuart, D.I.3
Gilbert, R.J.C.4
Brierley, I.5
-
33
-
-
34548768192
-
The three transfer rnas occupying the a, p and e sites on the ribosome are involved in viral programmed -1 ribosomal frameshift
-
Leger,M., Dulude,D., Steinberg,S.V. and Brakier-Gingras,L. (2007) The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed -1 ribosomal frameshift. Nucleic Acids Res., 35, 5581-5592.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5581-5592
-
-
Leger, M.1
Dulude, D.2
Steinberg, S.V.3
Brakier-Gingras, L.4
-
34
-
-
42949139492
-
The mechanics of translocation: A molecular ''spring-and-ratchet'' system
-
Moran,S.J., Flanagan,J.F.t., Namy,O., Stuart,D.I., Brierley,I. and Gilbert,R.J. (2008) The mechanics of translocation: A molecular ''spring-and-ratchet'' system. Structure, 16, 664-672.
-
(2008)
Structure
, vol.16
, pp. 664-672
-
-
Moran, S.J.1
Flanagan, J.F.T.2
Namy, O.3
Stuart, D.I.4
Brierley, I.5
Gilbert, R.J.6
-
35
-
-
77950809174
-
Achieving a golden mean: Mechanisms by which coronaviruses ensure synthesis of the correct stoichiometric ratios of viral proteins
-
Plant,E.P., Rakauskaite,R., Taylor,D.R. and Dinman,J.D. (2010) Achieving a golden mean: Mechanisms by which coronaviruses ensure synthesis of the correct stoichiometric ratios of viral proteins. J. Virol., 84, 4330-4340.
-
(2010)
J. Virol
, vol.84
, pp. 4330-4340
-
-
Plant, E.P.1
Rakauskaite, R.2
Taylor, D.R.3
Dinman, J.D.4
-
36
-
-
78651274466
-
The many paths to frameshifting: Kinetic modelling and analysis of the effects of different elongation steps on programmed -1 ribosomal frameshifting
-
Liao,P.-Y., Choi,Y.S., Dinman,J.D. and Lee,K.H. (2011) The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed -1 ribosomal frameshifting. Nucleic Acids Res., 39, 300-312.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 300-312
-
-
Liao, P.-Y.1
Choi, Y.S.2
Dinman, J.D.3
Lee, K.H.4
-
37
-
-
84858173140
-
Targeting frameshifting in the human immunodeficiency virus
-
Brakier-Gingras,L., Charbonneau,J. and Butcher,S.E. (2012) Targeting frameshifting in the human immunodeficiency virus. Expert Opin. Ther. Targets, 16, 249-258.
-
(2012)
Expert Opin. Ther. Targets
, vol.16
, pp. 249-258
-
-
Brakier-Gingras, L.1
Charbonneau, J.2
Butcher, S.E.3
-
38
-
-
84867620850
-
Mechanisms and implications of programmed translational frameshifting
-
Wiley Interdiscip
-
Dinman,J.D. (2012) Mechanisms and implications of programmed translational frameshifting. Wiley Interdiscip. Rev. RNA, 3, 661-673.
-
(2012)
Rev. RNA
, vol.3
, pp. 661-673
-
-
Dinman, J.D.1
-
39
-
-
0024411889
-
Characterization of an efficient coronavirus ribosomal frameshifting signal: Requirement for an RNA pseudoknot
-
Brierley,I., Digard,P. and Inglis,S.C. (1989) Characterization of an efficient coronavirus ribosomal frameshifting signal: Requirement for an RNA pseudoknot. Cell, 57, 537-547.
-
(1989)
Cell
, vol.57
, pp. 537-547
-
-
Brierley, I.1
Digard, P.2
Inglis, S.C.3
-
40
-
-
0035200990
-
Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency
-
Kontos,H., Napthine,S. and Brierley,I. (2001) Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency. Mol. Cell. Biol., 21, 8657-8670.
-
(2001)
Mol. Cell. Biol
, vol.21
, pp. 8657-8670
-
-
Kontos, H.1
Napthine, S.2
Brierley, I.3
-
41
-
-
0026733573
-
Ribosomal movement impeded at a pseudoknot required for frameshifting
-
Tu,C., Tzeng,T.H. and Bruenn,J.A. (1992) Ribosomal movement impeded at a pseudoknot required for frameshifting. Proc. Natl Acad. Sci. USA, 89, 8636-8640.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 8636-8640
-
-
Tu, C.1
Tzeng, T.H.2
Bruenn, J.A.3
-
42
-
-
0027494569
-
Ribosomal pausing during translation of an RNA pseudoknot
-
Somogyi,P., Jenner,A.J., Brierley,I. and Inglis,S.C. (1993) Ribosomal pausing during translation of an RNA pseudoknot. Mol. Cell. Biol., 13, 6931-6940.
-
(1993)
Mol. Cell. Biol
, vol.13
, pp. 6931-6940
-
-
Somogyi, P.1
Jenner, A.J.2
Brierley, I.3
Inglis, S.C.4
-
43
-
-
17844384225
-
Torsional restraint: A new twist on frameshifting pseudoknots
-
Plant,E.P. and Dinman,J.D. (2005) Torsional restraint: A new twist on frameshifting pseudoknots. Nucleic Acids Res., 33, 1825-1833.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1825-1833
-
-
Plant, E.P.1
Dinman, J.D.2
-
44
-
-
0036314316
-
Analysis of natural variants of the human immunodeficiency virus type 1 gag-pol rameshift stem-loop structure
-
Telenti,A., Martinez,R., Munoz,M., Bleiber,G., Greub,G., Sanglard,D. and Peters,S. (2002) Analysis of natural variants of the human immunodeficiency virus type 1 gag-pol rameshift stem-loop structure. J. Virol., 76, 7868-7873.
-
(2002)
J. Virol
, vol.76
, pp. 7868-7873
-
-
Telenti, A.1
Martinez, R.2
Munoz, M.3
Bleiber, G.4
Greub, G.5
Sanglard, D.6
Peters, S.7
-
45
-
-
0036828175
-
Proline residues within spacer peptide p1 are important for human immunodeficiency virus type 1 infectivity, protein processing, and genomic RNA dimer stability
-
Hill,M.K., Shehu-Xhilaga,M., Crowe,S.M. and Mak,J. (2002) Proline residues within spacer peptide p1 are important for human immunodeficiency virus type 1 infectivity, protein processing, and genomic RNA dimer stability. J. Virol., 76, 11245-11253.
-
(2002)
J. Virol
, vol.76
, pp. 11245-11253
-
-
Hill, M.K.1
Shehu-Xhilaga, M.2
Crowe, S.M.3
Mak, J.4
-
46
-
-
34347256404
-
Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting
-
Hansen,T.M., Reihani,S.N., Oddershede,L.B. and Sorensen,M.A. (2007) Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting. Proc. Natl Acad. Sci. USA, 104, 5830-5835.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 5830-5835
-
-
Hansen, T.M.1
Reihani, S.N.2
Oddershede, L.B.3
Sorensen, M.A.4
-
47
-
-
69149104281
-
Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting
-
Chen,G., Chang,K.-Y., Chou,M.-Y., Bustamante,C. and Tinoco,I. (2009) Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting. Proc. Natl Acad. Sci. USA, 106, 12706-12711.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 12706-12711
-
-
Chen, G.1
Chang, K.-Y.2
Chou, M.-Y.3
Bustamante, C.4
Tinoco, I.5
-
48
-
-
79952460651
-
RNA reactions one molecule at a time
-
Tinoco,I., Chen,G. and Qu,X. (2010) RNA reactions one molecule at a time. Cold Spring Harb. Perspect. Biol., 2, a003624.
-
(2010)
Cold Spring Harb. Perspect. Biol
, vol.2
, pp. 003624
-
-
Tinoco, I.1
Chen, G.2
Qu, X.3
-
49
-
-
79959676389
-
The ribosome uses two active mechanisms to unwind messenger RNA during translation
-
Qu,X., Wen,J.-D., Lancaster,L., Noller,H.F., Bustamante,C. and Tinoco,I. (2011) The ribosome uses two active mechanisms to unwind messenger RNA during translation. Nature, 475, 118-121.
-
(2011)
Nature
, vol.475
, pp. 118-121
-
-
Qu, X.1
Wen, J.-D.2
Lancaster, L.3
Noller, H.F.4
Bustamante, C.5
Tinoco, I.6
-
50
-
-
36749056800
-
Characterization of the mechanical unfolding of RNA pseudoknots
-
Green,L., Kim,C.H., Bustamante,C. and Tinoco,I. Jr (2008) Characterization of the mechanical unfolding of RNA pseudoknots. J. Mol. Biol., 375, 511-528.
-
(2008)
J. Mol. Biol
, vol.375
, pp. 511-528
-
-
Green, L.1
Kim, C.H.2
Bustamante, C.3
Tinoco Jr., I.4
-
51
-
-
42449095556
-
Predicting ribosomal frameshifting efficiency
-
Cao,S. and Chen,S.-J. (2008) Predicting ribosomal frameshifting efficiency. Phys. Biol., 5, 16002.
-
(2008)
Phys. Biol
, vol.5
, pp. 16002
-
-
Cao, S.1
Chen, S.-J.2
-
52
-
-
84867036862
-
Programmed -1 frameshifting efficiency correlates with RNA pseudoknot conformational plasticity, not resistance to mechanical unfolding
-
Ritchie,D.B., Foster,D.A. and Woodside,M.T. (2012) Programmed -1 frameshifting efficiency correlates with RNA pseudoknot conformational plasticity, not resistance to mechanical unfolding. Proc. Natl Acad. Sci. USA, 109, 16167-16172.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 16167-16172
-
-
Ritchie, D.B.1
Foster, D.A.2
Woodside, M.T.3
-
53
-
-
38349137949
-
The presence of the TAR RNA structure alters the programmed -1 ribosomal frameshift efficiency of the human immunodeficiency virus type 1 (HIV-1) by modifying the rate of translation initiation
-
Gendron,K., Charbonneau,J., Dulude,D., Heveker,N., Ferbeyre,G. and Brakier-Gingras,L. (2008) The presence of the TAR RNA structure alters the programmed -1 ribosomal frameshift efficiency of the human immunodeficiency virus type 1 (HIV-1) by modifying the rate of translation initiation. Nucleic Acids Res., 36, 30-40.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 30-40
-
-
Gendron, K.1
Charbonneau, J.2
Dulude, D.3
Heveker, N.4
Ferbeyre, G.5
Brakier-Gingras, L.6
-
54
-
-
68449092202
-
Architecture and secondary structure of an entire HIV-1 RNA genome
-
Watts,J.M., Dang,K.K., Gorelick,R.J., Leonard,C.W., Bess,J.W. Jr, Swanstrom,R., Burch,C.L. and Weeks,K.M. (2009) Architecture and secondary structure of an entire HIV-1 RNA genome. Nature, 460, 711-716.
-
(2009)
Nature
, vol.460
, pp. 711-716
-
-
Watts, J.M.1
Dang, K.K.2
Gorelick, R.J.3
Leonard, C.W.4
Bess Jr., J.W.5
Swanstrom, R.6
Burch, C.L.7
Weeks, K.M.8
-
55
-
-
40849123031
-
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
-
Wilkinson,K.A., Gorelick,R.J., Vasa,S.M., Guex,N., Rein,A., Mathews,D.H., Giddings,M.C. and Weeks,K.M. (2008) High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. PLoS Biol., 6, e96.
-
(2008)
PLoS Biol
, vol.6
-
-
Wilkinson, K.A.1
Gorelick, R.J.2
Vasa, S.M.3
Guex, N.4
Rein, A.5
Mathews, D.H.6
Giddings, M.C.7
Weeks, K.M.8
-
56
-
-
70350167221
-
Selection and characterization of small molecules that bind the HIV-1 frameshift site RNA
-
Marcheschi,R.J., Mouzakis,K.D. and Butcher,S.E. (2009) Selection and characterization of small molecules that bind the HIV-1 frameshift site RNA. ACS Chem. Biol., 4, 844-854.
-
(2009)
ACS Chem. Biol
, vol.4
, pp. 844-854
-
-
Marcheschi, R.J.1
Mouzakis, K.D.2
Butcher, S.E.3
-
57
-
-
34748821686
-
Programmed ribosomal frameshifting in SIV is induced by a highly structured RNA stem-loop
-
Marcheschi,R.J., Staple,D.W. and Butcher,S.E. (2007) Programmed ribosomal frameshifting in SIV is induced by a highly structured RNA stem-loop. J. Mol. Biol., 373, 652-663.
-
(2007)
J. Mol. Biol
, vol.373
, pp. 652-663
-
-
Marcheschi, R.J.1
Staple, D.W.2
Butcher, S.E.3
-
58
-
-
0016292941
-
Urea and guanidine hydrochloride denaturation of ribonuclease, lysozyme, a-chymotrypsin, and b-lactoglobulin
-
Greene,R.F. and Pace,C.N. (1974) Urea and guanidine hydrochloride denaturation of ribonuclease, lysozyme, a-chymotrypsin, and b-lactoglobulin. J. Biol. Chem., 249, 5388-5393.
-
(1974)
J. Biol. Chem
, vol.249
, pp. 5388-5393
-
-
Greene, R.F.1
Pace, C.N.2
-
59
-
-
0032552882
-
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
-
Xia,T., SantaLucia,J. Jr, Burkard,M.E., Kierzek,R., Schroeder,S.J., Jiao,X., Cox,C. and Turner,D.H. (1998) Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry, 37, 14719-14735.
-
(1998)
Biochemistry
, vol.37
, pp. 14719-14735
-
-
Xia, T.1
Santa Lucia Jr., J.2
Burkard, M.E.3
Kierzek, R.4
Schroeder, S.J.5
Jiao, X.6
Cox, C.7
Turner, D.H.8
-
60
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews,D.H., Sabina,J., Zuker,M. and Turner,D.H. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
-
(1999)
J. Mol. Biol
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
61
-
-
84860124319
-
Testing the nearest neighbor model for canonical RNA base pairs: Revision of GU parameters
-
Chen,J.L., Dishler,A.L., Kennedy,S.D., Yildirim,I., Liu,B., Turner,D.H. and Serra,M.J. (2012) Testing the nearest neighbor model for canonical RNA base pairs: revision of GU parameters. Biochemistry, 51, 3508-3522.
-
(2012)
Biochemistry
, vol.51
, pp. 3508-3522
-
-
Chen, J.L.1
Dishler, A.L.2
Kennedy, S.D.3
Yildirim, I.4
Liu, B.5
Turner, D.H.6
Serra, M.J.7
-
62
-
-
77951974177
-
Structural aspects of messenger RNA reading frame maintenance by the ribosome
-
Jenner,L.B., Demeshkina,N., Yusupova,G. and Yusupov,M. (2010) Structural aspects of messenger RNA reading frame maintenance by the ribosome. Nat. Struct. Mol. Biol., 17, 555-560.
-
(2010)
Nat. Struct. Mol. Biol
, vol.17
, pp. 555-560
-
-
Jenner, L.B.1
Demeshkina, N.2
Yusupova, G.3
Yusupov, M.4
-
63
-
-
83855162728
-
The structure of the eukaryotic ribosome at 3.0 A ̊ resolution
-
Ben-Shem,A., Garreau de Loubresse,N., Melnikov,S., Jenner,L., Yusupova,G. and Yusupov,M. (2011) The structure of the eukaryotic ribosome at 3.0 A ̊ resolution. Science, 334, 1524-1529.
-
(2011)
Science
, vol.334
, pp. 1524-1529
-
-
Ben-Shem, A.1
Garreau De Loubresse, N.2
Melnikov, S.3
Jenner, L.4
Yusupova, G.5
Yusupov, M.6
-
64
-
-
0035958587
-
The path of messenger RNA through the ribosome
-
Yusupova,G.Z., Yusupov,M.M., Cate,J.H.D. and Noller,H.F. (2001) The path of messenger RNA through the ribosome. Cell, 106, 233-241.
-
(2001)
Cell
, vol.106
, pp. 233-241
-
-
Yusupova, G.Z.1
Yusupov, M.M.2
Cate, J.H.D.3
Noller, H.F.4
-
65
-
-
84861908221
-
One core, two shells: Bacterial and eukaryotic ribosomes
-
Melnikov,S., Ben-Shem,A., Garreau de Loubresse,N., Jenner,L., Yusupova,G. and Yusupov,M. (2012) One core, two shells: bacterial and eukaryotic ribosomes. Nat. Struct. Mol. Biol., 19, 560-567.
-
(2012)
Nat. Struct. Mol. Biol
, vol.19
, pp. 560-567
-
-
Melnikov, S.1
Ben-Shem, A.2
Garreau De Loubresse, N.3
Jenner, L.4
Yusupova, G.5
Yusupov, M.6
-
66
-
-
78649426085
-
Crystal structure of the eukaryotic ribosome
-
Ben-Shem,A., Jenner,L., Yusupova,G. and Yusupov,M. (2010) Crystal structure of the eukaryotic ribosome. Science, 330, 1203-1209.
-
(2010)
Science
, vol.330
, pp. 1203-1209
-
-
Ben-Shem, A.1
Jenner, L.2
Yusupova, G.3
Yusupov, M.4
-
67
-
-
0031922812
-
A dual-luciferase reporter system for studying recoding signals
-
Grentzmann,G., Ingram,J.A., Kelly,P.J., Gesteland,R.F. and Atkins,J.F. (1998) A dual-luciferase reporter system for studying recoding signals. RNA, 4, 479-486.
-
(1998)
RNA
, vol.4
, pp. 479-486
-
-
Grentzmann, G.1
Ingram, J.A.2
Kelly, P.J.3
Gesteland, R.F.4
Atkins, J.F.5
-
68
-
-
0042703890
-
An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae
-
Harger,J.W. and Dinman,J.D. (2003) An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae. RNA, 9, 1019-1024.
-
(2003)
RNA
, vol.9
, pp. 1019-1024
-
-
Harger, J.W.1
Dinman, J.D.2
-
69
-
-
77949447172
-
RNAstructure: Software for RNA secondary structure prediction and analysis
-
Reuter,J. and Mathews,D. (2010) RNAstructure: Software for RNA secondary structure prediction and analysis. BMC Bioinf., 11, 129.
-
(2010)
BMC Bioinf
, vol.11
, pp. 129
-
-
Reuter, J.1
Mathews, D.2
-
70
-
-
48849094109
-
RNA secondary structure prediction
-
. Johnt Wiley & Sons, Inc., Wiley Online Library
-
Mathews,D.H., Turner,D.H. and Zuker,M. (2007) RNA secondary structure prediction. Current Protocols in Nucleic Acid Chemistry. John Wiley & Sons, Inc., Wiley Online Library. Vol. 28, pp. 11-17.
-
(2007)
Current Protocols in Nucleic Acid Chemistry
, vol.28
, pp. 11-17
-
-
Mathews, D.H.1
Turner, D.H.2
Zuker, M.3
-
71
-
-
0032539693
-
A unified view of polymer dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia,J. (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 1460-1465
-
-
Santa Lucia, J.1
-
72
-
-
84855291528
-
MRNA pseudoknot structures can act as ribosomal roadblocks
-
Tholstrup,J., Oddershede,L.B. and Sorensen,M.A. (2012) mRNA pseudoknot structures can act as ribosomal roadblocks. Nucleic Acids Res., 40, 303-313.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 303-313
-
-
Tholstrup, J.1
Oddershede, L.B.2
Sorensen, M.A.3
-
73
-
-
78650453303
-
Stimulation of ribosomal frameshifting by antisense LNA
-
Yu,C.-H., Noteborn,M.H.M. and Olsthoorn,R.C.L. (2010) Stimulation of ribosomal frameshifting by antisense LNA. Nucleic Acids Res., 38, 8277-8283.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 8277-8283
-
-
Yu, C.-H.1
Noteborn, M.H.M.2
Olsthoorn, R.C.L.3
-
74
-
-
58149517692
-
Functional consequences of human immunodeficiency virus escape from an HLA-B. 13-restricted CD8+T-cell epitope in p1 Gag protein
-
Prado,J.G., Honeyborne,I., Brierley,I., Puertas,M.C., Martinez-Picado,J. and Goulder,P.J.R. (2009) Functional consequences of human immunodeficiency virus escape from an HLA-B.*13-restricted CD8+T-cell epitope in p1 Gag protein. J. Virol., 83, 1018-1025.
-
(2009)
J. Virol
, vol.83
, pp. 1018-1025
-
-
Prado, J.G.1
Honeyborne, I.2
Brierley, I.3
Puertas, M.C.4
Martinez-Picado, J.5
Goulder, P.J.R.6
-
75
-
-
33846702679
-
A novel substrate-based HIV-1 protease inhibitor drug resistance mechanism
-
Nijhuis,M., van Maarseveen,N.M., Lastere,S., Schipper,P., Coakley,E., Glass,B., Rovenska,M., de Jong,D., Chappey,C., Goedegebuure,I.W. et al. (2007) A novel substrate-based HIV-1 protease inhibitor drug resistance mechanism. PLoS Med., 4, e36.
-
(2007)
PLoS Med
, vol.4
-
-
Nijhuis, M.1
Van Maarseveen, N.M.2
Lastere, S.3
Schipper, P.4
Coakley, E.5
Glass, B.6
Rovenska, M.7
De Jong, D.8
Chappey, C.9
Goedegebuurei, W.10
-
76
-
-
84863426700
-
Mutational patterns in the frameshift-regulating site of HIV-1 selected by protease inhibitors
-
Knops,E., Brakier-Gingras,L., Schulter,E., Pfister,H., Kaiser,R. and Verheyen,J. (2012) Mutational patterns in the frameshift-regulating site of HIV-1 selected by protease inhibitors. Med. Microbiol. Immunol., 201, 213-218.
-
(2012)
Med. Microbiol. Immunol
, vol.201
, pp. 213-218
-
-
Knops, E.1
Brakier-Gingras, L.2
Schulter, E.3
Pfister, H.4
Kaiser, R.5
Verheyen, J.6
-
77
-
-
84865617152
-
Opening of the TAR hairpin in the HIV-1 genome causes aberrant RNA dimerization and packaging
-
Das,A.T., Vrolijk,M.M., Harwig,A. and Berkhout,B. (2012) Opening of the TAR hairpin in the HIV-1 genome causes aberrant RNA dimerization and packaging. Retrovirology, 9, 59.
-
(2012)
Retrovirology
, vol.9
, pp. 59
-
-
Das, A.T.1
Vrolijk, M.M.2
Harwig, A.3
Berkhout, B.4
-
78
-
-
80455129659
-
Stem-loop structures can effectively substitute for an RNA pseudoknot in -1 ribosomal frameshifting
-
Yu,C.-H., Noteborn,M.H., Pleij,C.W.A. and Olsthoorn,R.C.L. (2011) Stem-loop structures can effectively substitute for an RNA pseudoknot in -1 ribosomal frameshifting. Nucleic Acids Res., 39, 8952-8959.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 8952-8959
-
-
Yu, C.-H.1
Noteborn, M.H.2
Pleij, C.W.A.3
Olsthoorn, R.C.L.4
-
79
-
-
84857399085
-
The 50 UTR of HIV-1 full-length mRNA and the Tat viral protein modulate the programmed -1 ribosomal frameshift that generates HIV-1 enzymes
-
Charbonneau,J., Gendron,K., Ferbeyre,G. and Brakier-Gingras,L. (2012) The 50 UTR of HIV-1 full-length mRNA and the Tat viral protein modulate the programmed -1 ribosomal frameshift that generates HIV-1 enzymes. RNA, 18, 519-529.
-
(2012)
RNA
, vol.18
, pp. 519-529
-
-
Charbonneau, J.1
Gendron, K.2
Ferbeyre, G.3
Brakier-Gingras, L.4
-
80
-
-
0024117032
-
Ribosome pausing and stacking during translation of a eukaryotic mRNA
-
Wolin,S.L. and Walter,P. (1988) Ribosome pausing and stacking during translation of a eukaryotic mRNA. EMBO J., 7, 3559-3569.
-
(1988)
EMBO J.
, vol.7
, pp. 3559-3569
-
-
Wolin, S.L.1
Walter, P.2
-
81
-
-
69049113945
-
Footprinting analysis of BWYV pseudoknot-ribosome complexes
-
Mazauric,M.H., Leroy,J.L., Visscher,K., Yoshizawa,S. and Fourmy,D. (2009) Footprinting analysis of BWYV pseudoknot-ribosome complexes. RNA, 15, 1775-1786.
-
(2009)
RNA
, vol.15
, pp. 1775-1786
-
-
Mazauric, M.H.1
Leroy, J.L.2
Visscher, K.3
Yoshizawa, S.4
Fourmy, D.5
-
82
-
-
84866918012
-
Spacer-length dependence of programmed -1 or -2 ribosomal frameshifting on a U6A heptamer supports a role for messenger RNA (mRNA) tension in frameshifting
-
Lin,Z., Gilbert,R.J. and Brierley,I. (2012) Spacer-length dependence of programmed -1 or -2 ribosomal frameshifting on a U6A heptamer supports a role for messenger RNA (mRNA) tension in frameshifting. Nucleic Acids Res., 40, 8674-8689.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 8674-8689
-
-
Lin, Z.1
Gilbert, R.J.2
Brierley, I.3
-
83
-
-
0026533645
-
Identification and analysis of the gag-pol ribosomal frameshift site of feline immunodeficiency virus
-
Morikawa,S. and Bishop,D.H. (1992) Identification and analysis of the gag-pol ribosomal frameshift site of feline immunodeficiency virus. Virology, 186, 389-397.
-
(1992)
Virology
, vol.186
, pp. 389-397
-
-
Morikawa, S.1
Bishop, D.H.2
-
84
-
-
0033589709
-
Differential stability of the mRNA secondary structures in the frameshift site of various HIV type 1 viruses
-
Chang,S.Y., Sutthent,R., Auewarakul,P., Apichartpiyakul,C., Essex,M. and Lee,T.H. (1999) Differential stability of the mRNA secondary structures in the frameshift site of various HIV type 1 viruses. AIDS Res. Hum. Retroviruses, 15, 1591-1596.
-
(1999)
AIDS Res. Hum. Retroviruses
, vol.15
, pp. 1591-1596
-
-
Chang, S.Y.1
Sutthent, R.2
Auewarakul, P.3
Apichartpiyakul, C.4
Essex, M.5
Lee, T.H.6
-
85
-
-
77953789703
-
Gag mutations can impact virological response to dual-boosted protease inhibitor combinations in antiretroviral-naive HIV-infected patients
-
Larrouy,L., Chazallon,C., Landman,R., Capitant,C., Peytavin,G., Collin,G., Charpentier,C., Storto,A., Pialoux,G., Katlama,C. et al. (2010) Gag mutations can impact virological response to dual-boosted protease inhibitor combinations in antiretroviral-naive HIV-infected patients. Antimicrob. Agents Chemother., 54, 2910-2919.
-
(2010)
Antimicrob. Agents Chemother
, vol.54
, pp. 2910-2919
-
-
Larrouy, L.1
Chazallon, C.2
Landman, R.3
Capitant, C.4
Peytavin, G.5
Collin, G.6
Charpentier, C.7
Storto, A.8
Pialoux, G.9
Katlama, C.10
|