메뉴 건너뛰기




Volumn 9, Issue 3, 2014, Pages

Prediction of steps in the evolution of variola virus host range

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CAMELPOX VIRUS; GENE LOSS; GENETIC VARIABILITY; HOST RANGE; MUTATIONAL ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; O1L GENE; ORTHOLOGY; ORTHOPOXVIRUS; PHENOTYPE; PHYLOGENETIC TREE; POXVIRUS; PREDICTION; SINGLE NUCLEOTIDE POLYMORPHISM; SMALLPOX VIRUS; TATERAPOX VIRUS; VACCINIA VIRUS; VIRUS GENE; VIRUS GENOME; VIRUS REPLICATION; CHEMISTRY; GENETIC VARIATION; GENETICS; GENOME; HUMAN; MOLECULAR EVOLUTION; MUTATION; PHYLOGENY; POXVIRIDAE;

EID: 84898731230     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0091520     Document Type: Article
Times cited : (23)

References (48)
  • 1
    • 77949565769 scopus 로고    scopus 로고
    • Origin of measles virus: Divergence from rinderpest virus between the 11th and 12th centuries
    • doi:10.1186/1743-422X-7-52
    • Furuse Y, Suzuki A, Oshitani H (2010) Origin of measles virus: divergence from rinderpest virus between the 11th and 12th centuries. Virol J 7: 52. doi:10.1186/1743-422X-7-52.
    • (2010) Virol J , vol.7 , pp. 52
    • Furuse, Y.1    Suzuki, A.2    Oshitani, H.3
  • 2
    • 84865813650 scopus 로고    scopus 로고
    • A retrospective study of the orthopoxvirus molecular evolution
    • doi:10.1016/j.mee-gid.2012.07.011
    • Babkin IV, Babkina IN (2012) A retrospective study of the orthopoxvirus molecular evolution. Infect Genet Evol 12: 1597-1604. doi:10.1016/j.mee-gid. 2012.07.011.
    • (2012) Infect Genet Evol , vol.12 , pp. 1597-1604
    • Babkin, I.V.1    Babkina, I.N.2
  • 4
    • 79952130470 scopus 로고    scopus 로고
    • Orthopoxvirus genome evolution: The role of gene loss
    • doi:10.3390/v2091933
    • Hendrickson RC, Wang C, Hatcher EL, Lefkowitz EJ (2010) Orthopoxvirus genome evolution: the role of gene loss. Viruses 2: 1933-1967. doi:10.3390/v2091933.
    • (2010) Viruses , vol.2 , pp. 1933-1967
    • Hendrickson, R.C.1    Wang, C.2    Hatcher, E.L.3    Lefkowitz, E.J.4
  • 5
    • 84859485200 scopus 로고    scopus 로고
    • Emergence and reemergence of smallpox: The need for development of a new generation smallpox vaccine
    • doi:10.1016/j.vaccine.2011.05.037
    • Shchelkunov SN (2011) Emergence and reemergence of smallpox: the need for development of a new generation smallpox vaccine. Vaccine 29 Suppl 4: D49-D53. doi:10.1016/j.vaccine.2011.05.037.
    • (2011) Vaccine , vol.29 , Issue.SUPPL. 4
    • Shchelkunov, S.N.1
  • 6
    • 77649211332 scopus 로고    scopus 로고
    • Killing a killer: What next for smallpox?
    • doi:10.1371/journal.ppat.1000727
    • McFadden G (2010) Killing a killer: what next for smallpox? PLoS Pathog 6: e1000727. doi:10.1371/journal.ppat.1000727.
    • (2010) PLoS Pathog , vol.6
    • McFadden, G.1
  • 7
    • 26244441364 scopus 로고    scopus 로고
    • Ectromelia virus: The causative agent of mousepox
    • DOI 10.1099/vir.0.81090-0
    • Esteban DJ, Buller RML (2005) Ectromelia virus: the causative agent of mousepox. J Gen Virol 86: 2645-2659. doi:10.1099/vir.0.81090-0. (Pubitemid 41410454)
    • (2005) Journal of General Virology , vol.86 , Issue.10 , pp. 2645-2659
    • Esteban, D.J.1    Buller, R.M.L.2
  • 10
    • 0033604517 scopus 로고    scopus 로고
    • The complete DNA sequence of myxoma virus
    • doi:10.1006/viro.1999.0001
    • Cameron C, Hota-Mitchell S, Chen L, Barrett J, Cao JX, et al. (1999) The complete DNA sequence of myxoma virus. Biochemistry 264: 298-318. doi:10.1006/viro.1999.0001.
    • (1999) Biochemistry , vol.264 , pp. 298-318
    • Cameron, C.1    Hota-Mitchell, S.2    Chen, L.3    Barrett, J.4    Cao, J.X.5
  • 11
    • 0034634305 scopus 로고    scopus 로고
    • Coevolution of host and virus: Cellular localization of virus in myxoma virus infection of resistant and susceptible European rabbits
    • doi:10.1006/viro.2000.0505
    • Best SM, Collins SV, Kerr PJ (2000) Coevolution of host and virus: cellular localization of virus in myxoma virus infection of resistant and susceptible European rabbits. Biochemistry 277: 76-91. doi:10.1006/viro.2000. 0505.
    • (2000) Biochemistry , vol.277 , pp. 76-91
    • Best, S.M.1    Collins, S.V.2    Kerr, P.J.3
  • 12
    • 84857424101 scopus 로고    scopus 로고
    • Myxomatosis in Australia and Europe: A model for emerging infectious diseases
    • doi:10.1016/j.antiviral.2012.01.009
    • Kerr PJ (2012) Myxomatosis in Australia and Europe: a model for emerging infectious diseases. Antiviral Res 93: 387-415. doi:10.1016/j.antiviral.2012.01. 009.
    • (2012) Antiviral Res , vol.93 , pp. 387-415
    • Kerr, P.J.1
  • 13
    • 79954425188 scopus 로고    scopus 로고
    • Phylogenetics
    • doi:10.1007/s00203-011-0677-x
    • Sleator RD (2011) Phylogenetics. Arch Microbiol 193: 235-239. doi:10.1007/s00203-011-0677-x.
    • (2011) Arch Microbiol , vol.193 , pp. 235-239
    • Sleator, R.D.1
  • 14
    • 84862814389 scopus 로고    scopus 로고
    • Molecular phylogenetics: Principles and practice
    • doi:10.1038/nrg3186
    • Yang Z, Rannala B (2012) Molecular phylogenetics: principles and practice. Nat Rev Genet 13: 303-314. doi:10.1038/nrg3186.
    • (2012) Nat Rev Genet , vol.13 , pp. 303-314
    • Yang, Z.1    Rannala, B.2
  • 15
    • 79956212793 scopus 로고    scopus 로고
    • Genes in the terminal regions of orthopoxvirus genomes experience adaptive molecular evolution
    • doi:10.1186/1471-2164-12-261
    • Esteban DJ, Hutchinson AP (2011) Genes in the terminal regions of orthopoxvirus genomes experience adaptive molecular evolution. BMC Genomics 12: 261. doi:10.1186/1471-2164-12-261.
    • (2011) BMC Genomics , vol.12 , pp. 261
    • Esteban, D.J.1    Hutchinson, A.P.2
  • 17
    • 84864142391 scopus 로고    scopus 로고
    • Species selectivity in poxviral complement regulators is dictated by the charge reversal in the central complement control protein modules
    • doi:10.4049/jimmunol.1200946
    • Yadav VN, Pyaram K, Ahmad M, Sahu A (2012) Species selectivity in poxviral complement regulators is dictated by the charge reversal in the central complement control protein modules. J Immunol 189: 1431-1439. doi:10.4049/jimmunol.1200946.
    • (2012) J Immunol , vol.189 , pp. 1431-1439
    • Yadav, V.N.1    Pyaram, K.2    Ahmad, M.3    Sahu, A.4
  • 19
    • 79955473658 scopus 로고    scopus 로고
    • Characterization of indels in poxvirus genomes
    • doi:10.1007/s11262-010-0560-x
    • Coulson D, Upton C (2011) Characterization of indels in poxvirus genomes. Virus Genes 42: 171-177. doi:10.1007/s11262-010-0560-x.
    • (2011) Virus Genes , vol.42 , pp. 171-177
    • Coulson, D.1    Upton, C.2
  • 20
    • 84855855161 scopus 로고    scopus 로고
    • Genomic analysis of the vaccinia virus strain variants found in Dryvax vaccine
    • doi:10.1128/JVI.05779-11
    • Qin L, Upton C, Hazes B, Evans DH (2011) Genomic analysis of the vaccinia virus strain variants found in Dryvax vaccine. J Virol 85: 13049-13060. doi:10.1128/JVI.05779-11.
    • (2011) J Virol , vol.85 , pp. 13049-13060
    • Qin, L.1    Upton, C.2    Hazes, B.3    Evans, D.H.4
  • 21
    • 68049142320 scopus 로고    scopus 로고
    • Multiple alignment of DNA sequences with MAFFT
    • doi:10.1007/978-1-59745-251-9-3
    • Katoh K, Asimenos G, Toh H (2009) Multiple alignment of DNA sequences with MAFFT. Methods Mol Biol 537: 39-64. doi:10.1007/978-1-59745-251-9-3.
    • (2009) Methods Mol Biol , vol.537 , pp. 39-64
    • Katoh, K.1    Asimenos, G.2    Toh, H.3
  • 22
    • 84898737097 scopus 로고    scopus 로고
    • Base-By-Base version 2: Single nucleotide-level analysis of whole viral genome alignments
    • doi:10.1186/2042-5783-1-2
    • Hillary W, Lin S-H, Upton C (2011) Base-By-Base version 2: single nucleotide-level analysis of whole viral genome alignments. Microb Inform Exp 1: 2. doi:10.1186/2042-5783-1-2.
    • (2011) Microb Inform Exp , vol.1 , pp. 2
    • Hillary, W.1    Lin, S.-H.2    Upton, C.3
  • 23
    • 13244260787 scopus 로고    scopus 로고
    • Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
    • doi:10.1186/1471-2105-5-96
    • Brodie R, Smith AJ, Roper RL, Tcherepanov V, Upton C (2004) Base-By-Base: single nucleotide-level analysis of whole viral genome alignments. BMC Bioinformatics 5: 96. doi:10.1186/1471-2105-5-96.
    • (2004) BMC Bioinformatics , vol.5 , pp. 96
    • Brodie, R.1    Smith, A.J.2    Roper, R.L.3    Tcherepanov, V.4    Upton, C.5
  • 24
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • doi:10.1093/molbev/msr121
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739. doi:10.1093/molbev/msr121.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 25
    • 0032503233 scopus 로고    scopus 로고
    • The complete genomic sequence of the modified vaccinia Ankara strain: Comparison with other orthopoxviruses
    • DOI 10.1006/viro.1998.9123
    • Antoine G, Scheiflinger F, Dorner F, Falkner FG (1998) The complete genomic sequence of the modified vaccinia Ankara strain: comparison with other orthopoxviruses. Biochemistry 244: 365-396. doi:10.1006/viro.1998.9123. (Pubitemid 28384101)
    • (1998) Virology , vol.244 , Issue.2 , pp. 365-396
    • Antoine, G.1    Scheiflinger, F.2    Dorner, F.3    Falkner, F.G.4
  • 26
    • 84857088609 scopus 로고    scopus 로고
    • The vaccinia virus O1 protein is required for sustained activation of extracellular signal-regulated kinase 1/2 and promotes viral virulence
    • doi:10.1128/JVI.06166-11
    • Schweneker M, Lukassen S, Späth M, Wolferstätter M, Babel E, et al. (2012) The vaccinia virus O1 protein is required for sustained activation of extracellular signal-regulated kinase 1/2 and promotes viral virulence. J Virol 86: 2323-2336. doi:10.1128/JVI.06166-11.
    • (2012) J Virol , vol.86 , pp. 2323-2336
    • Schweneker, M.1    Lukassen, S.2    Späth, M.3    Wolferstätter, M.4    Babel, E.5
  • 27
    • 84882872270 scopus 로고    scopus 로고
    • Recombinant MVA vaccines: Dispelling the myths
    • doi:10.1016/j.vaccine.2013.03.021
    • Cottingham MG, Carroll MW (2013) Recombinant MVA vaccines: Dispelling the myths. Vaccine. doi:10.1016/j.vaccine.2013.03.021.
    • (2013) Vaccine
    • Cottingham, M.G.1    Carroll, M.W.2
  • 28
    • 79961202383 scopus 로고    scopus 로고
    • Chasing Jenner's vaccine: Revisiting cowpox virus classification
    • doi:10.1371/journal.pone.0023086
    • Carroll DS, Emerson GL, Li Y, Sammons S, Olson V, et al. (2011) Chasing Jenner's vaccine: revisiting cowpox virus classification. PLoS ONE 6: e23086. doi:10.1371/journal.pone.0023086.
    • (2011) PLoS ONE , vol.6
    • Carroll, D.S.1    Emerson, G.L.2    Li, Y.3    Sammons, S.4    Olson, V.5
  • 30
    • 60049093133 scopus 로고    scopus 로고
    • Genome comparison of a nonpathogenic myxoma virus field strain with its ancestor, the virulent Lausanne strain
    • doi:10.1128/JVI.02189-08
    • Morales M, Ramírez MA, Cano MJ, Párraga M, Castilla J, et al. (2009) Genome comparison of a nonpathogenic myxoma virus field strain with its ancestor, the virulent Lausanne strain. J Virol 83: 2397-2403. doi:10.1128/JVI.02189-08.
    • (2009) J Virol , vol.83 , pp. 2397-2403
    • Morales, M.1    Ramírez, M.A.2    Cano, M.J.3    Párraga, M.4    Castilla, J.5
  • 31
    • 84868090378 scopus 로고    scopus 로고
    • Evolutionary history and attenuation of myxoma virus on two continents
    • doi:10.1371/journal.ppat.1002950
    • Kerr PJ, Ghedin E, DePasse JV, Fitch A, Cattadori IM, et al. (2012) Evolutionary history and attenuation of myxoma virus on two continents. PLoS Pathog 8: e1002950. doi:10.1371/journal.ppat.1002950.
    • (2012) PLoS Pathog , vol.8
    • Kerr, P.J.1    Ghedin, E.2    DePasse, J.V.3    Fitch, A.4    Cattadori, I.M.5
  • 32
    • 33646444562 scopus 로고    scopus 로고
    • Genome of crocodilepox virus
    • doi:10.1128/JVI.80.10.4978-4991.2006
    • Afonso CL, Tulman ER, Delhon G, Lu Z, Viljoen GJ, et al. (2006) Genome of crocodilepox virus. J Virol 80: 4978-4991. doi:10.1128/JVI.80.10.4978-4991. 2006.
    • (2006) J Virol , vol.80 , pp. 4978-4991
    • Afonso, C.L.1    Tulman, E.R.2    Delhon, G.3    Lu, Z.4    Viljoen, G.J.5
  • 34
    • 0035866622 scopus 로고    scopus 로고
    • The genome sequence of Yaba-like disease virus, a yatapoxvirus
    • DOI 10.1006/viro.2000.0761
    • Lee HJ, Essani K, Smith GL (2001) The genome sequence of Yaba-like disease virus, a yatapoxvirus. Biochemistry 281: 170-192. doi:10.1006/viro.2000. 0761. (Pubitemid 32881135)
    • (2001) Virology , vol.281 , Issue.2 , pp. 170-192
    • Lee, H.-J.1    Essani, K.2    Smith, G.L.3
  • 35
    • 77649253974 scopus 로고    scopus 로고
    • Vaccinia protein F12 has structural similarity to kinesin light chain and contains a motor binding motif required for virion export
    • doi:10.1371/journal.ppat.1000785
    • Morgan GW, Hollinshead M, Ferguson BJ, Murphy BJ, Carpentier DCJ, et al. (2010) Vaccinia protein F12 has structural similarity to kinesin light chain and contains a motor binding motif required for virion export. PLoS Pathog 6: e1000785. doi:10.1371/journal.ppat.1000785.
    • (2010) PLoS Pathog , vol.6
    • Morgan, G.W.1    Hollinshead, M.2    Ferguson, B.J.3    Murphy, B.J.4    Carpentier, D.C.J.5
  • 36
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP and related tools
    • DOI 10.1038/nprot.2007.131, PII NPROT.2007.131
    • Emanuelsson O, Brunak S, Heijne von G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2: 953-971. doi:10.1038/nprot.2007.131. (Pubitemid 46745592)
    • (2007) Nature Protocols , vol.2 , Issue.4 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    Von, H.G.3    Nielsen, H.4
  • 37
    • 3242878999 scopus 로고    scopus 로고
    • PrediSi: Prediction of signal peptides and their cleavage positions
    • DOI 10.1093/nar/gkh378
    • Hiller K, Grote A, Scheer M, Münch R, Jahn D (2004) PrediSi: prediction of signal peptides and their cleavage positions. Nucleic Acids Res 32: W375-W379. doi:10.1093/nar/gkh378. (Pubitemid 38997362)
    • (2004) Nucleic Acids Research , vol.32 , Issue.WEB SERVER ISS.
    • Hiller, K.1    Grote, A.2    Scheer, M.3    Munch, R.4    Jahn, D.5
  • 39
    • 48449106792 scopus 로고    scopus 로고
    • The Jpred 3 secondary structure prediction server
    • doi:10.1093/nar/gkn238
    • Cole C, Barber JD, Barton GJ (2008) The Jpred 3 secondary structure prediction server. Nucleic Acids Res 36: W197-W201. doi:10.1093/nar/gkn238.
    • (2008) Nucleic Acids Res , vol.36
    • Cole, C.1    Barber, J.D.2    Barton, G.J.3
  • 40
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • DOI 10.1006/jmbi.2000.4315
    • Krogh A, Larsson B, Heijne von G, Sonnhammer EL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567-580. doi:10.1006/jmbi.2000.4315. (Pubitemid 33032862)
    • (2001) Journal of Molecular Biology , vol.305 , Issue.3 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.L.4
  • 41
    • 34248515264 scopus 로고    scopus 로고
    • Mapping and phenotypic analysis of spontaneous isatin-beta- thiosemicarbazone resistant mutants of vaccinia virus
    • DOI 10.1016/j.virol.2007.02.005, PII S0042682207000918
    • Cresawn SG, Prins C, Latner DR, Condit RC (2007) Mapping and phenotypic analysis of spontaneous isatin-beta-thiosemicarbazone resistant mutants of vaccinia virus. Virology 363: 319-332. doi:10.1016/j.virol.2007.02.005. (Pubitemid 46764955)
    • (2007) Virology , vol.363 , Issue.2 , pp. 319-332
    • Cresawn, S.G.1    Prins, C.2    Latner, D.R.3    Condit, R.C.4
  • 42
    • 0022383209 scopus 로고
    • Transcriptional and translational mapping and nucleotide sequence analysis of a vaccinia virus gene encoding the precursor of the major core polypeptide 4b
    • Rosel J, Moss B (1985) Transcriptional and translational mapping and nucleotide sequence analysis of a vaccinia virus gene encoding the precursor of the major core polypeptide 4b. J Virol 56: 830-838. (Pubitemid 16211820)
    • (1985) Journal of Virology , vol.56 , Issue.3 , pp. 830-838
    • Rosel, J.1    Moss, B.2
  • 43
    • 59649095042 scopus 로고    scopus 로고
    • Vaccinia Virus Protein F12 Associates with Intracellular Enveloped Virions through an Interaction with A36
    • doi:10.1128/JVI.01364-08
    • Sara C Johnston BMW (2009) Vaccinia Virus Protein F12 Associates with Intracellular Enveloped Virions through an Interaction with A36. J Virol 83: 1708-1717. doi:10.1128/JVI.01364-08.
    • (2009) J Virol , vol.83 , pp. 1708-1717
    • Sara, C.1    Johnston, B.M.W.2
  • 44
    • 67650102351 scopus 로고    scopus 로고
    • Vaccinia-induced epidermal growth factor receptor-MEK signalling and the anti-apoptotic protein F1L synergize to suppress cell death during infection
    • doi:10.1111/j.1462-5822.2009.01327.x
    • Postigo A, Martin MC, Dodding MP, Way M (2009) Vaccinia-induced epidermal growth factor receptor-MEK signalling and the anti-apoptotic protein F1L synergize to suppress cell death during infection. Cell Microbiol 11: 1208-1218. doi:10.1111/j.1462-5822.2009.01327.x.
    • (2009) Cell Microbiol , vol.11 , pp. 1208-1218
    • Postigo, A.1    Martin, M.C.2    Dodding, M.P.3    Way, M.4
  • 45
    • 79953685601 scopus 로고    scopus 로고
    • Genome sequence of SG33 strain and recombination between wild-type and vaccine myxoma viruses
    • doi:10.3201/eid1704.101146
    • Camus-Bouclainville C, Gretillat M, Py R, Gelfi J, Guérin JL, et al. (2011) Genome sequence of SG33 strain and recombination between wild-type and vaccine myxoma viruses. Emerg Infect Dis 17: 633-638. doi:10.3201/eid1704. 101146.
    • (2011) Emerg Infect Dis , vol.17 , pp. 633-638
    • Camus-Bouclainville, C.1    Gretillat, M.2    Py, R.3    Gelfi, J.4    Guérin, J.L.5
  • 46
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • DOI 10.1093/bioinformatics/bth490
    • Martin DP, Williamson C, Posada D (2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262. doi:10.1093/bioinformatics/bth490. (Pubitemid 40202028)
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 48
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • doi:10.1186/1471-2105-5-113
    • Edgar RC (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113. doi:10.1186/1471-2105-5- 113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.