메뉴 건너뛰기




Volumn 42, Issue 2, 2011, Pages 171-177

Characterization of indels in poxvirus genomes

Author keywords

Deletion; Genomics; Indel; Insertion; Poxvirus; Recombination; Vaccinia virus; Variola virus

Indexed keywords

ANIMAL CELL; ARTICLE; CHICKEN; CONTROLLED STUDY; DNA SEQUENCE; EMBRYO; GENE DELETION; GENE INSERTION; INDEL MUTATION; NONHUMAN; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POXVIRUS; PRIORITY JOURNAL; SMALLPOX VIRUS; TANDEM REPEAT; VACCINIA VIRUS; VIROGENESIS; VIRUS GENOME; VIRUS RECOMBINATION;

EID: 79955473658     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-010-0560-x     Document Type: Article
Times cited : (35)

References (30)
  • 1
    • 72149098578 scopus 로고    scopus 로고
    • The evolutionary biology of poxviruses
    • 19833230 10.1016/j.meegid.2009.10.001 1:CAS:528:DC%2BD1MXhs1WisLjE
    • AL Hughes S Irausquin R Friedman 2010 The evolutionary biology of poxviruses Infect. Genet. Evol. 10 50 59 19833230 10.1016/j.meegid.2009.10.001 1:CAS:528:DC%2BD1MXhs1WisLjE
    • (2010) Infect. Genet. Evol. , vol.10 , pp. 50-59
    • Hughes, A.L.1    Irausquin, S.2    Friedman, R.3
  • 2
    • 45749105886 scopus 로고    scopus 로고
    • Poxvirus host range genes
    • 18585528 10.1016/S0065-3527(08)00003-1 1:CAS:528:DC%2BD1cXhtVOnsbjN
    • SJ Werden MM Rahman G McFadden 2008 Poxvirus host range genes Adv. Virus Res. 71 135 171 18585528 10.1016/S0065-3527(08)00003-1 1:CAS:528: DC%2BD1cXhtVOnsbjN
    • (2008) Adv. Virus Res. , vol.71 , pp. 135-171
    • Werden, S.J.1    Rahman, M.M.2    McFadden, G.3
  • 3
    • 33746577836 scopus 로고    scopus 로고
    • In A Nutshell: Structure and Assembly of the Vaccinia Virion
    • DOI 10.1016/S0065-3527(06)66002-8, PII S0065352706660028
    • RC Condit N Moussatche P Traktman 2006 In a nutshell: structure and assembly of the vaccinia virion Adv. Virus Res. 66 31 124 16877059 10.1016/S0065-3527(06)66002-8 1:CAS:528:DC%2BD1cXhslOht7k%3D (Pubitemid 44131526)
    • (2006) Advances in Virus Research , vol.65 , pp. 31-124
    • Condit, R.C.1    Moussatche, N.2    Traktman, P.3
  • 4
    • 1642421758 scopus 로고    scopus 로고
    • Poxvirus genomes: A phylogenetic analysis
    • DOI 10.1099/vir.0.19565-0
    • C Gubser S Hue P Kellam GL Smith 2004 Poxvirus genomes: a phylogenetic analysis J. Gen. Virol. 85 105 117 14718625 10.1099/vir.0.19565-0 1:CAS:528:DC%2BD2cXhtFGrtrk%3D (Pubitemid 38128875)
    • (2004) Journal of General Virology , vol.85 , Issue.1 , pp. 105-117
    • Gubser, C.1    Hue, S.2    Kellam, P.3    Smith, G.L.4
  • 5
    • 0026621761 scopus 로고
    • Encoding of a homolog of the IFN-γ receptor by myxoma virus
    • C Upton K Mossman G McFadden 1992 Encoding of a homolog of the IFN-gamma receptor by myxoma virus Science 258 1369 1372 1455233 10.1126/science.1455233 1:CAS:528:DyaK3sXltFSiu7k%3D (Pubitemid 23007791)
    • (1992) Science , vol.258 , Issue.5086 , pp. 1369-1372
    • Upton, C.1    Mossman, K.2    McFadden, G.3
  • 6
    • 0027979253 scopus 로고
    • Homologs of vascular endothelial growth factor are encoded by the poxvirus orf virus
    • 8254780 1:CAS:528:DyaK2cXhsFGhtLw%3D
    • DJ Lyttle KM Fraser SB Fleming AA Mercer AJ Robinson 1994 Homologs of vascular endothelial growth factor are encoded by the poxvirus orf virus J. Virol. 68 84 92 8254780 1:CAS:528:DyaK2cXhsFGhtLw%3D
    • (1994) J. Virol. , vol.68 , pp. 84-92
    • Lyttle, D.J.1    Fraser, K.M.2    Fleming, S.B.3    Mercer, A.A.4    Robinson, A.J.5
  • 9
    • 77649197459 scopus 로고    scopus 로고
    • Vaccinia virus particles mix inefficiently, and in a way that would restrict viral recombination, in coinfected cells
    • 20032178 10.1128/JVI.01998-09 1:CAS:528:DC%2BC3cXisVCjtbs%3D
    • YJ Lin DH Evans 2010 Vaccinia virus particles mix inefficiently, and in a way that would restrict viral recombination, in coinfected cells J. Virol. 84 2432 2443 20032178 10.1128/JVI.01998-09 1:CAS:528:DC%2BC3cXisVCjtbs%3D
    • (2010) J. Virol. , vol.84 , pp. 2432-2443
    • Lin, Y.J.1    Evans, D.H.2
  • 10
    • 77956845506 scopus 로고    scopus 로고
    • Introduction of the six major genomic deletions of modified vaccinia virus Ankara (MVA) into the parental vaccinia virus is not sufficient to reproduce an MVA-like phenotype in cell culture and in mice
    • C. Meisinger-Henschel, M. Späth, S. Lukassen, M. Wolferstätter, H. Kachelrie, K. Baur, U. Dirmeier, M. Wagner, P. Chaplin, M. Suter, J. Hausmann, Introduction of the six major genomic deletions of modified vaccinia virus Ankara (MVA) into the parental vaccinia virus is not sufficient to reproduce an MVA-like phenotype in cell culture and in mice. J. Virol. (2010)
    • (2010) J. Virol.
    • Meisinger-Henschel, C.1    Späth, M.2    Lukassen, S.3    Wolferstätter, M.4    Kachelrie, H.5    Baur, K.6    Dirmeier, U.7    Wagner, M.8    Chaplin, P.9    Suter, M.10    Hausmann, J.11
  • 11
    • 0025876805 scopus 로고
    • Mapping of deletions in the genome of the highly attenuated vaccinia virus MVA and their influence on virulence
    • 2033387 10.1099/0022-1317-72-5-1031 1:CAS:528:DyaK3MXksVarur8%3D
    • H Meyer G Sutter A Mayr 1991 Mapping of deletions in the genome of the highly attenuated vaccinia virus MVA and their influence on virulence J. Gen. Virol. 72 Pt 5 1031 1038 2033387 10.1099/0022-1317-72-5-1031 1:CAS:528:DyaK3MXksVarur8%3D
    • (1991) J. Gen. Virol. , vol.72 , Issue.PART 5 , pp. 1031-1038
    • Meyer, H.1    Sutter, G.2    Mayr, A.3
  • 12
    • 0036856393 scopus 로고    scopus 로고
    • Poxvirus Orthologous Clusters (POCs)
    • A Ehlers J Osborne S Slack RL Roper C Upton 2002 Poxvirus Orthologous Clusters (POCs) Bioinformatics 18 1544 1545 12424130 10.1093/bioinformatics/18. 11.1544 1:CAS:528:DC%2BD38XosFOhu78%3D (Pubitemid 35414550)
    • (2002) Bioinformatics , vol.18 , Issue.11 , pp. 1544-1545
    • Ehlers, A.1    Osborne, J.2    Slack, S.3    Roper, R.L.4    Upton, C.5
  • 13
    • 77955019084 scopus 로고    scopus 로고
    • Parallelization of the MAFFT multiple sequence alignment program
    • K. Katoh, H. Toh, Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics (2010)
    • (2010) Bioinformatics
    • Katoh, K.1    Toh, H.2
  • 14
    • 13244260787 scopus 로고    scopus 로고
    • Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
    • DOI 10.1186/1471-2105-5-96
    • R Brodie AJ Smith RL Roper V Tcherepanov C Upton 2004 Base-By-Base: single nucleotide-level analysis of whole viral genome alignments BMC Bioinform. 5 96 10.1186/1471-2105-5-96 (Pubitemid 40195408)
    • (2004) BMC Bioinformatics , vol.5 , pp. 96
    • Brodie, R.1    Smith, A.J.2    Roper, R.L.3    Tcherepanov, V.4    Upton, C.5
  • 16
    • 38649092410 scopus 로고    scopus 로고
    • Dendroscope: An interactive viewer for large phylogenetic trees
    • DOI 10.1186/1471-2105-8-460
    • DH Huson DC Richter C Rausch T Dezulian M Franz R Rupp 2007 Dendroscope: an interactive viewer for large phylogenetic trees BMC Bioinform. 8 460 10.1186/1471-2105-8-460 (Pubitemid 351168201)
    • (2007) BMC Bioinformatics , vol.8 , pp. 460
    • Huson, D.H.1    Richter, D.C.2    Rausch, C.3    Dezulian, T.4    Franz, M.5    Rupp, R.6
  • 17
    • 0033793019 scopus 로고    scopus 로고
    • Rare genomic changes as a tool for phylogenetics
    • 10.1016/S0169-5347(00)01967-4
    • A Rokas PW Holland 2000 Rare genomic changes as a tool for phylogenetics Trends Ecol. Evol. (Amst.) 15 454 459 10.1016/S0169-5347(00)01967-4
    • (2000) Trends Ecol. Evol. (Amst.) , vol.15 , pp. 454-459
    • Rokas, A.1    Holland, P.W.2
  • 20
    • 77949443152 scopus 로고    scopus 로고
    • A poxvirus Bcl-2-like gene family involved in regulation of host immune response: Sequence similarity and evolutionary history
    • 20230632 10.1186/1743-422X-7-59
    • J Gonzalez M Esteban 2010 A poxvirus Bcl-2-like gene family involved in regulation of host immune response: sequence similarity and evolutionary history Virol. J. 7 59 20230632 10.1186/1743-422X-7-59
    • (2010) Virol. J. , vol.7 , pp. 59
    • Gonzalez, J.1    Esteban, M.2
  • 22
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences
    • DOI 10.1093/bib/bbn017, Special Issue: Critical Technologies for Bioinformatics
    • S Kumar M Nei J Dudley K Tamura 2008 MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences Brief. Bioinform. 9 299 306 18417537 10.1093/bib/bbn017 1:CAS:528:DC%2BD1cXpt1artrg%3D (Pubitemid 351890826)
    • (2008) Briefings in Bioinformatics , vol.9 , Issue.4 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 23
    • 0032570754 scopus 로고    scopus 로고
    • Slipped misalignment mechanisms of deletion formation: Analysis of deletion endpoints
    • DOI 10.1006/jmbi.1997.1566
    • VV Feschenko ST Lovett 1998 Slipped misalignment mechanisms of deletion formation: analysis of deletion endpoints J. Mol. Biol. 276 559 569 9551097 10.1006/jmbi.1997.1566 1:CAS:528:DyaK1cXit1Klsrk%3D (Pubitemid 28116130)
    • (1998) Journal of Molecular Biology , vol.276 , Issue.3 , pp. 559-569
    • Feschenko, V.V.1    Lovett, S.T.2
  • 24
    • 2942630097 scopus 로고    scopus 로고
    • Encoded errors: Mutations and rearrangements mediated by misalignment at repetitive DNA sequences
    • DOI 10.1111/j.1365-2958.2004.04076.x
    • ST Lovett 2004 Encoded errors: mutations and rearrangements mediated by misalignment at repetitive DNA sequences Mol. Microbiol. 52 1243 1253 15165229 10.1111/j.1365-2958.2004.04076.x 1:CAS:528:DC%2BD2cXkvFClt7w%3D (Pubitemid 38746300)
    • (2004) Molecular Microbiology , vol.52 , Issue.5 , pp. 1243-1253
    • Lovett, S.T.1
  • 25
    • 0026419949 scopus 로고
    • Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli
    • TQ Trinh RR Sinden 1991 Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli Nature 352 544 547 1865910 10.1038/352544a0 1:CAS:528:DyaK3MXltlWktr0%3D (Pubitemid 21912381)
    • (1991) Nature , vol.352 , Issue.6335 , pp. 544-547
    • Trinh, T.Q.1    Sinden, R.R.2
  • 26
    • 33748923096 scopus 로고    scopus 로고
    • Poxvirus DNA replication and human disease
    • ed. by M.L. DePamphilis (Cold Spring Harbor Laboratory Press, New York
    • B. Moss, F. De Silva, Poxvirus DNA replication and human disease, in DNA Replication & Human Disease, ed. by M.L. DePamphilis (Cold Spring Harbor Laboratory Press, New York, 2006), pp. 707-727
    • (2006) DNA Replication & Human Disease , pp. 707-727
    • Moss, B.1    De Silva, F.2
  • 27
    • 57049132029 scopus 로고    scopus 로고
    • Products and substrate/template usage of vaccinia virus DNA primase
    • 19007959 10.1016/j.virol.2008.10.008
    • FS De Silva N Paran B Moss 2009 Products and substrate/template usage of vaccinia virus DNA primase Virology 383 136 141 19007959 10.1016/j.virol.2008. 10.008
    • (2009) Virology , vol.383 , pp. 136-141
    • De Silva, F.S.1    Paran, N.2    Moss, B.3
  • 28
    • 33751363380 scopus 로고    scopus 로고
    • Predicted function of the vaccinia virus G5R protein
    • DOI 10.1093/bioinformatics/btl506
    • M Da Silva L Shen V Tcherepanov C Watson C Upton 2006 Predicted function of the vaccinia virus G5R protein Bioinformatics 22 2846 2850 17021162 10.1093/bioinformatics/btl506 1:CAS:528:DC%2BD28Xht1OgsrrK (Pubitemid 44811553)
    • (2006) Bioinformatics , vol.22 , Issue.23 , pp. 2846-2850
    • Da Silva, M.1    Shen, L.2    Tcherepanov, V.3    Watson, C.4    Upton, C.5
  • 29
    • 0023766659 scopus 로고
    • Tumorigenic poxviruses: Fine analysis of the recombination junctions in malignant rabbit fibroma virus, a recombinant between Shope fibroma virus and myxoma virus
    • 2842947 10.1016/0042-6822(88)90164-X 1:CAS:528:DyaL1cXlvVCmsrc%3D
    • C Upton JL Macen RA Maranchuk AM DeLange G McFadden 1988 Tumorigenic poxviruses: fine analysis of the recombination junctions in malignant rabbit fibroma virus, a recombinant between Shope fibroma virus and myxoma virus Virology 166 229 239 2842947 10.1016/0042-6822(88)90164-X 1:CAS:528: DyaL1cXlvVCmsrc%3D
    • (1988) Virology , vol.166 , pp. 229-239
    • Upton, C.1    MacEn, J.L.2    Maranchuk, R.A.3    Delange, A.M.4    McFadden, G.5
  • 30
    • 33845204083 scopus 로고    scopus 로고
    • Smallpox vaccines: Past, present, and future
    • DOI 10.1016/j.jaci.2006.09.037, PII S0091674906020136
    • J Parrino BS Graham 2006 Smallpox vaccines: past, present, and future J. Allergy Clin. Immunol. 118 1320 1326 17157663 10.1016/j.jaci.2006.09.037 1:CAS:528:DC%2BD28Xht12rsb3N (Pubitemid 44854134)
    • (2006) Journal of Allergy and Clinical Immunology , vol.118 , Issue.6 , pp. 1320-1326
    • Parrino, J.1    Graham, B.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.