Global selection on sucrose synthase haplotypes during a century of wheat breeding

Plant Physiology

Volumn 164, Issue 4, 2014, Pages 1918-1929

  Hou, Jian ^a   Jiang, Qiyan ^a   Hao, Chenyang ^a   Wang, Yuquan ^a   Zhang, Hongna ^a   Zhang, Xueyong ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC MARKER; GLUCOSYLTRANSFERASE; MESSENGER RNA; SUCROSE SYNTHASE;

AMINO ACID SEQUENCE; BREEDING; CHEMISTRY; CHINA; CHROMOSOME MAP; DIPLOIDY; ENZYMOLOGY; EUROPE; GENE EXPRESSION REGULATION; GENE LOCUS; GENETIC MARKER; GENETIC POLYMORPHISM; GENETIC SELECTION; GENETICS; GEOGRAPHY; HAPLOTYPE; INTERNATIONAL COOPERATION; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; MUTATION; NORTH AMERICA; OPEN READING FRAME; PLANT GENE; PLANT SEED; POLYPLOIDY; WHEAT;

AMINO ACID SEQUENCE; BREEDING; CHINA; CHROMOSOME MAPPING; CLONING, MOLECULAR; DIPLOIDY; EUROPE; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENETIC LOCI; GENETIC MARKERS; GEOGRAPHY; GLUCOSYLTRANSFERASES; HAPLOTYPES; INTERNATIONALITY; MOLECULAR SEQUENCE DATA; MUTATION; NORTH AMERICA; OPEN READING FRAMES; POLYMORPHISM, GENETIC; POLYPLOIDY; RNA, MESSENGER; SEEDS; SELECTION, GENETIC; TRITICUM;

EID: 84898727830     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.113.232454     Document Type: Article

References (45)

1. Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201
2. Barrero RA, Bellgard M, Zhang XY (2011) Diverse approaches to achieving grain yield in wheat. Funct Integr Genomics 11: 37-48
3. Benkert P, Biasini M, Schwede T (2011) Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics 27: 343-350
4. Bieniawska Z, Paul Barratt DH, Garlick AP, Thole V, Kruger NJ, Martin C, Zrenner R, Smith AM (2007) Analysis of the sucrose synthase gene family in Arabidopsis. Plant J 49: 810-828
5. Bologa KL, Fernie AR, Leisse A, Loureiro ME, Geigenberger P (2003) A bypass of sucrose synthase leads to low internal oxygen and impaired metabolic performance in growing potato tubers. Plant Physiol 132: 2058-2072
6. Brenchley R, Spannagl M, Pfeifer M, Barker GL, D'Amore R, Allen AM, McKenzie N, Kramer M, Kerhornou A, Bolser D, et al (2012) Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 491: 705-710
7. Chourey PS, Taliercio EW, Carlson SJ, Ruan YL (1998) Genetic evidence that the two isozymes of sucrose synthase present in developing maize endosperm are critical, one for cell wall integrity and the other for starch biosynthesis. Mol Gen Genet 259: 88-96
8. Coleman HD, Beamish L, Reid A, Park JY, Mansfield SD (2010) Altered sucrose metabolism impacts plant biomass production and flower development. Transgenic Res 19: 269-283
9. Dale EM, Housley TL (1986) Sucrose synthase activity in developing wheat endosperms differing in maximum weight. Plant Physiol 82: 7-10
10. Doehlert DC, Kuo TM, Felker FC (1988) Enzymes of sucrose and hexose metabolism in developing kernels of two inbreds of maize. Plant Physiol 86: 1013-1019
11. Dong YS, Cao YS, Zhang XY, Liu SC, Wang LF, You GX, Pang BS, Li LH, Jia JZ (2003) Development of candidate core collections in Chinese common wheat germplasm. Journal of Plant Genetic Resources 4: 1-8
12. Dubcovsky J, Dvorak J (2007) Genome plasticity a key factor in the success of polyploid wheat under domestication. Science 316: 1862-1866
13. Flint-Garcia SA, Thornsberry JM, Buckler ES IV (2003) Structure of linkage disequilibrium in plants. Annu Rev Plant Biol 54: 357-374
14. Fu Z, Chai Y, Zhou Y, Yang X, Warburton ML, Xu S, Cai Y, Zhang D, Li J, Yan J (2013) Natural variation in the sequence of PSY1 and frequency of favorable polymorphisms among tropical and temperate maize germplasm. Theor Appl Genet 126: 923-935
15. Gaut BS, Clegg MT (1991) Molecular evolution of alcohol dehydrogenase 1 in members of the grass family. Proc Natl Acad Sci USA 88: 2060-2064
16. Gu YQ, Salse J, Coleman-Derr D, Dupin A, Crossman C, Lazo GR, Huo N, Belcram H, Ravel C, Charmet G, et al (2006) Types and rates of sequence evolution at the high-molecular-weight glutenin locus in hexaploid wheat and its ancestral genomes. Genetics 174: 1493-1504
17. Guex N, Peitsch MC (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18: 2714-2723
18. Guo ZA, Song YX, Zhou RH, Ren ZL, Jia JZ (2010) Discovery, evaluation and distribution of haplotypes of the wheat Ppd-D1 gene. New Phytol 185: 841-851
19. Hao CY, Dong YC, Wang LF, You GX, Zhang H, Ge HM, Jia JZ, Zhang XY (2008) Genetic diversity and construction of core collection in Chinese wheat genetic resources. Chin Sci Bull 53: 908-915
20. Hao CY, Wang LF, Ge HM, Dong YC, Zhang XY (2011) Genetic diversity and linkage disequilibrium in Chinese bread wheat (Triticum aestivum L.) revealed by SSR markers. PLoS ONE 6: e17279
21. Hao CY, Wang LF, Zhang XY, You GX, Dong YS, Jia JZ, Liu X, Shang XW, Liu SC, Cao YS (2006) Genetic diversity in Chinese modern wheat varieties revealed by microsatellite markers. Sci China C Life Sci 49: 218-226
22. Hirose T, Scofield GN, Terao T (2008) An expression analysis profile for the entire sucrose synthase gene family in rice. Plant Sci 174: 534-543
23. Jiang Q, Hou J, Hao C, Wang L, Ge H, Dong Y, Zhang X (2011) The wheat (T. aestivum) sucrose synthase 2 gene (TaSus2) active in endosperm development is associated with yield traits. Funct Integr Genomics 11: 49-61
24. Keeling PL, Myers AM (2010) Biochemistry and genetics of starch synthesis. Annu Rev Food Sci Technol 1: 271-303
25. Kleczkowski LA, Kunz S, Wilczynska M (2010) Mechanisms of UDPglucose synthesis in plants. Crit Rev Plant Sci 29: 191-203
26. Mohan A, Kulwal P, Singh R, Kumar V, Mir RR, Kumar J, Prasad M, Balyan HS, Gupta PK (2009) Genome-wide QTL analysis for pre-harvest sprouting tolerance in bread wheat. Euphytica 168: 319-329
27. Morell MK, Kosar-Hashemi B, Cmiel M, Samuel MS, Chandler P, Rahman S, Buleon A, Batey IL, Li Z (2003) Barley sex6 mutants lack starch synthase IIa activity and contain a starch with novel properties. Plant J 34: 173-185
28. Olmos S, Distelfeld A, Chicaiza O, Schlatter AR, Fahima T, Echenique V, Dubcovsky J (2003) Precise mapping of a locus affecting grain protein content in durum wheat. Theor Appl Genet 107: 1243-1251
29. SanMiguel P, Gaut BS, Tikhonov A, Nakajima Y, Bennetzen JL (1998) The paleontology of intergene retrotransposons of maize. Nat Genet 20: 43-45
30. Schwede T, Kopp J, Guex N, Peitsch MC (2003) SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 31: 3381-3385
31. Sharp PJ, Kreis M, Shewry PR, Gale MD (1988) Location of β-amylase sequence in wheat and its relatives. Theor Appl Genet 75: 289-290
32. Sourdille P, Singh S, Cadalen T, Brown-Guedira GL, Gay G, Qi L, Gill BS, Dufour P, Murigneux A, Bernard M (2004) Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.). Funct Integr Genomics 4: 12-25
33. Su ZQ, Hao CY, Wang LF, Dong YC, Zhang XY (2011) Identification and development of a functional marker of TaGW2 associated with grain weight in bread wheat (Triticum aestivum L.). Theor Appl Genet 122: 211-223
34. Tian Z, Qian Q, Liu Q, Yan M, Liu X, Yan C, Liu G, Gao Z, Tang S, Zeng D, et al (2009) Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities. Proc Natl Acad Sci USA 106: 21760-21765
35. Turner NC (2004) Agronomic options for improving rainfall-use efficiency of crops in dryland farming systems. J Exp Bot 55: 2413-2425
36. Wang LF, Ge HM, Hao CY, Dong YS, Zhang XY (2012) Identifying loci influencing 1,000-kernel weight in wheat by microsatellite screening for evidence of selection during breeding. PLoS ONE 7: e29432
37. Xing YZ, Zhang QF (2010) Genetic and molecular bases of rice yield. Annu Rev Plant Biol 61: 421-442
38. Yan J, Kandianis CB, Harjes CE, Bai L, Kim EH, Yang X, Skinner DJ, Fu Z, Mitchell S, Li Q, et al (2010) Rare genetic variation at Zea mays crtRB1 increases β-carotene in maize grain. Nat Genet 42: 322-327
39. Yang DL, Jing RL, Chang XP, Li W (2007) Identification of quantitative trait loci and environmental interactions for accumulation and remobilization of water-soluble carbohydrates in wheat (Triticum aestivum L.) stems. Genetics 176: 571-584
40. Yang J, Zhang J, Wang Z, Xu G, Zhu Q (2004) Activities of key enzymes in sucrose-to-starch conversion in wheat grains subjected to water deficit during grain filling. Plant Physiol 135: 1621-1629
41. Zhang DL, Hao CY, Wang LF, Zhang XY (2012) Identifying loci influencing grain number by microsatellite screening in bread wheat (Triticum aestivum L.). Planta 236: 1507-1517
42. Zhang DQ, Xu BH, Yang XH, Zhang ZY, Li BL (2011) The sucrose synthase gene family in Populus: structure, expression, and evolution. Tree Genet Genomes 7: 443-456
43. Zhang XY, Li CW, Wang LF, Wang HM, You GX, Dong YS (2002) An estimation of the minimum number of SSR alleles needed to reveal genetic relationships in wheat varieties. I. Information from large-scale planted varieties and cornerstone breeding parents in Chinese wheat improvement and production. Theor Appl Genet 106: 112-117
44. Zhang XY, Tong YP, You GX, Hao CY, Ge HM, Wang LF, Li B, Dong YS, Li ZS (2007) Hitchhiking effect mapping: a new approach for discovering agronomic important genes. Agric Sci China 6: 255-264
45. Zheng Y, Anderson S, Zhang Y, Garavito RM (2011) The structure of sucrose synthase-1 from Arabidopsis thaliana and its functional implications. J Biol Chem 286: 36108-36118