Hitchhiking Effect Mapping: A New Approach for Discovering Agronomic Important Genes

Agricultural Sciences in China

Volumn 6, Issue 3, 2007, Pages 255-264

  ZHANG, Xue yong ^a   TONG, Yi ping ^b   YOU, Guang xia ^a   HAO, Chen yang ^a   GE, Hong mei ^a   WANG, Lanfen ^a   LI, Bin ^b   DONG, Yu shen ^a   LI, Zhen sheng ^b  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

Author keywords

domestication breeding; gene discovery; hitchhiking effects; marker trait association analysis

Indexed keywords

TRITICUM AESTIVUM;

EID: 34247337252     PISSN: 16712927     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1671-2927(07)60043-1     Document Type: Article

References (34)

1. Andolfatto P. Adaptive hitchhiking effects on genome variability. Current Opinion in Genetics & Development 11 (2001) 635-641
2. Ashikari M., Sakakibara H., Lin S., Yamamoto T., Takashi T., Nishimura A., Angeles E., Qian Q., Kitano H., and Matsuoka M. Cytokinin oxidase regulates rice grain production. Science 309 (2005) 741-745
3. Börner A., Schumann E., Fürste A., Cöster H., Leithold B., Röder M., and Weber W. Mapping of quantitative trait loci determining agronomic important characters in hexaploid wheat (Triticum aestivum L.). Theoretical and Applied Genetics 105 (2002) 921-936
4. Fan C., Xing Y., Mao H., Lu T., Han B., Xu C., Li X., and Zhang Q. GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theoretical and Applied Genetics 112 (2006) 1164-1171
5. Flint-Garcia S., Thuillet A., Yu J., Pressoir G., Romero S., Mitchell S., Doebley J., Kresovich S., Goodman M., and Bucker E. Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant Journal 44 (2005) 1054-1064
6. Flint-Garcia S., Thornsberry J., and Buckler E. Structure of linkage disequilibrium in plants. Annual Review of Plant Biology 54 (2003) 357-374
7. Frary A., Nesbitt T., Frary A., Grandillo S., Knaap E., Cong B., Liu J., Meller J., Elber R., Alpert K., and Tanksley S. fw2.2: A Quantitative trait locus key to the evolution of tomato fruit size. Science 289 (2000) 85-88
8. Gebhardt C., Ballvora A., Walkemeier B., Oberhagemann P., and Schüler K. Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with quantitative variation of resistance to late blight and maturity type. Molecular Breeding 13 (2004) 1572-9788
9. Hao C., Zhang X., Wang L., Dong Y., Shang X., and Jia J. Genetic diversity and core collection evaluations in common wheat germplasm from the Nouthwestern Spring Wheat Region in China. Molecular Breeding 17 (2006) 69-77
10. Hao C., Wang L., Dong Y., Jia J., and Zhang X. Comparison of fluorescence and silver-staining detection systems of microsatellite markers. Acta Agronomic Sinica 31 (2005) 144-149 (in Chinese)
11. Hao C., Wang L., Zhang X., You G., Jia J., Liu X., Shang X., Liu S., and Cao Y. Genetic diversity in Chinese modern wheat varieties revealed by microsatellite markers. Science in China (Series C) 35 (2005) 408-415 (in Chinese)
12. Ivandic V., Hackett C., Nevo E., Keith R., and Thomas W. Analysis of simple sequences repeats (SSRs) in wild barley from the Fertile Crescent: associations with ecology, geography and flowering time. Plant Molecular Biology 48 (2002) 511-527
13. Jantasuriyuanrat C., Vales M., Watson C., and Riera-Lizarazu O. Identification and mapping of genetic loci affecting the free-threshing habit and spike compactness in wheat (Triticum aestivum L.). Theoretical and Applied Genetics 108 (2004) 261-273
14. Korzun V., Röder M., Ganal M., Worland A., and Law C. Genetic analysis of the dwarfing gene (Rht8) in wheat. Part I. Molecular mapping of Rht8 on the short arm of chromosome 2D of bread wheat (Triticum aestivum L.). Theoretical and Applied Genetics 96 (1998) 1104-1109
15. Lukens L., and Doebley J. Molecular evolution of the teosinte branched gene among maize and related grasses. Molecular Biology and Evolution 18 (2001) 627-638
16. Marshall D., Langridge P., and Appels R. Wheat breeding in the new century-preface. Australian Journal of Agricultural Research 52 (2001) 1-4
17. Mousset S., Brazier L., Cariou M., Chartois F., Depaulis F., and Veuille M. Evidence of a high rate of selective sweeps in African Drosophila melanogaster. Genetics 163 (2003) 599-609
18. Palaisa K., Morgante M., Tinggey S., and Rafalski A. Longrange patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep. Proceedings of the National Academy of Sciences of the USA 101 (2004) 9885-9890
19. Peleman J., and Roupp van der Voort J. Breeding by design. Trends in Plant Science 8 (2003) 330-334
20. Peng J., Ronin Y., Fahima T., Röder M., Li Y., Nevo E., and Korol A. Domestication quantitative trait loci in Triticum dicoccides, the progenitor of wheat. Proceedings of the National Academy of Sciences of the USA 100 (2003) 147-159
21. Pestsova E., and Röder M. Microsatellite analysis of wheat chromosome 2D allows the reconstruction of chromosomal inheritance in pedigrees of breeding programmes. Theoretical and Applied Genetics 106 (2002) 84-91
22. Qi L., Echalier B., Chao S., Lazo G., Butler G., Anderson O., Akhunov E., Dvorák J., Linkiewicz A., Ratnassiri A., Dubcovsky J., Bermudez-Kandianis C., Greene R., Kantety R., La Rota C., Munkvold J., Sorrells S., Sorrellks M., Dilbirligi M., Sidhu D., Erayman M., randhawa H., Sandhu D., bondareva S., Gill K., Mahmoud A., Ma X., Miftahudin, Gustafson J., Conley E., Nduati V., Gonzalea-Hernandez J., Anderson J., Peng J., Lapitan N., Hossain K., kalavacharla V., Kianian S., Pathan M., Zhang D., Nguyen H., Choi D., Fenton R., Close T., McGuire P., Qualset C., and Gill B. A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat. Genetics 168 (2004) 701-712
23. Quarrie S., Steed A., Calestani C., Semikhodskii A., Lebreton C., Chinoy C., Steele N., Pljevljakusic D., Waterman E., Weyen J., Schondelmaier J., Habash D., Farmer P., Saker L., Clarkson D., Abugalieva A., Yessimbekova M., Turuspekov Y., Abugalieva S., Tuberosa R., Sanguineti M., Hollington P., Aragues R., Royo A., and Doding D. A high-density genetic map of hexaploid wheat (Triticum aestivum L.) from the cross Chinese Spring x SQ1 and its use to compare QTLs for grain yield across a range of environments. Theoretical and Applied Genetics 110 (2005) 865-880
24. Rieseberg L., Widmer A., Arntz A., and Burk J. Directional selection is the primary cause of phenotypic diversification. Proceedings of the National Academy of Sciences of the USA 99 (2002) 12242-12245
25. Röder M., Korzun V., Wendehake K., Plaschke J., Tixier M., Leroy P., and Ganal M. A microsatellite map of wheat. Genetics 149 (1998) 2007-2023
26. Schlötterer C. Hitchhiking mapping-functional genomics from the population genetics perspective. Trends in Genetics 19 (2003) 32-38
27. Schuelke M. An economic method for the fluorescent labeling of PCR fragments: A poor man's approach to genotyping for research and high throughput diagnostics. Nature Biotechnology 18 (2000) 233-234
28. Somers D., Isaac P., and Edwards K. A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theoretical and Applied Genetics 109 (2004) 1105-1114
29. Su J Y, Xiao Y M, Li M, Liu Q Y, Li B, Tong Y P, Jia J Z. Li Z S. 2006. Mapping QTLs for phosphorus-deficiency tolerance at wheat seedling stage. Plant and Soil, in press.
30. Tanksley S., and McCouch S. Seed bank and molecular maps: Unlocking genetic potential from the wild. Science 277 (1997) 1063-1066
31. Vigourroux Y., McMullen M., Hittinger C., Houchins K., Schulz L., Kresovich S., Matsuoka Y., and Doebley J. Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proceedings of the National Academy of Sciences of the USA 99 (2002) 9650-9655
32. Vigourroux Y., Mitchell S., Matsuoka Y., Hamblin M., Kresovich S., Smith J., Jaqueth J., Smith O., and Doebley J. An analysis of genetic diversity across the maize genome using microsatellites. Genetics 196 (2005) 1617-1630
33. Worland A., Korzun V., Ganal M., Röder M., and Law C. Genetic analysis of the dwarfing gene (Rht8) in wheat. Part II. The distribution and adaptive significant of allelic variants at the Rht8 locus of wheat as revealed by microsatellite screening. Theoretical and Applied Genetics 96 (1998) 1110-1120
34. In: Zhuang Q. (Ed). Chinese Wheat Improvement and Pedigree Analysis (2003), China Agricultural Publishing House, Beijing Chief editor.