Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.)

Functional and Integrative Genomics

Volumn 4, Issue 1, 2004, Pages 12-25

  Sourdille, Pierre ^a   Singh, Sukhwinder ^b   Cadalen, Thierry ^a   Brown Guedira, Gina L ^b   Gay, Georges ^a   Qi, Lili ^b   Gill, Bikram S ^b   Dufour, Philippe ^c   Murigneux, Alain ^a   Bernard, Michel ^a  

^a CEMAGREF   (France)

^b KANSAS STATE UNIVERSITY   (United States)

^c Biogemma   (France)

Author keywords

Comparative mapping; Deletion lines; Genetic map; Microsatellites

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; CENTROMERE; CHROMOSOME ANALYSIS; CHROMOSOME DELETION; COMPARATIVE GENE MAPPING; CYTOGENETICS; EXPRESSED SEQUENCE TAG; GENE LOCUS; HETEROZYGOSITY; HOMOZYGOSITY; INTERSTITIAL CHROMOSOME DELETION; MARKER GENE; NONHUMAN; PLANT BREEDING; PLANT GENETICS; PLANT SEED; PRIORITY JOURNAL; TELOMERE; WHEAT; BIOLOGY; CHROMOSOME MAP; GENE DELETION; GENETIC LINKAGE; GENETICS; GENOME; METHODOLOGY;

TRITICUM AESTIVUM;

COMPUTATIONAL BIOLOGY; GENE DELETION; GENOME, PLANT; LINKAGE (GENETICS); MICROSATELLITE REPEATS; PHYSICAL CHROMOSOME MAPPING; TRITICUM;

EID: 6944223154     PISSN: 1438793X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10142-004-0106-1     Document Type: Article

References (58)

1. Brinkmann B, Klintschar M, Neuhuber F, Huhne J, Rolf B (1998) Mutation rate in human microsatellites: Influence of the structure and length of the tandem repeat. Am J Hum Genet 62:1408-1415 1:CAS:528:DyaK1cXlslCiu70%3D
2. Cadalen T, Boeuf C, Bernard S, Bernard M (1997) An intervarietal molecular marker map in Triticum aestivum L. em. Thell. and comparison with a map from a wide cross. Theor Appl Genet 94:367-377 10.1007/ s001220050425
3. Chao S, Sharp PJ, Worland AJ, Warham EJ, Koebner RMD et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theor Appl Genet 78:495-504 1:CAS:528:DyaK3cXhslWmtw%3D%3D
4. Delaney DE, Nasuda S, Endo TR, Gill BS, Hulbert SH (1995a) Cytologically based physical maps of the group-2 chromosomes of wheat. Theor Appl Genet 91:568-573 1:CAS:528:DyaK2MXpsVertLs%3D
5. Delaney DE, Nasuda S, Endo TR, Gill BS, Hulbert SH (1995b) Cytologically based physical maps of the group 3 chromosomes of wheat. Theor Appl Genet 91:780-782 1:CAS:528:DyaK2MXpvFyru7Y%3D
6. Devos KM, Gale MD (1993) The genetic maps of wheat and their potential in plant breeding. Outlook Agric 22:93-99
7. Dvorák J, Chen DK (1984) Distribution of nonstructural variation between wheat cultivars along chromosome arm 6Bp: Evidence from the linkage map and physical map of the arm. Genetics 106:325-333
8. Ellegren H, Primmer CR, Sheldon BC (1995) Microsatellite 'evolution': directionality or bias ? Nat Genet 11:360-362 1:CAS:528:DyaK2MXpvVCks7g%3D
9. Endo TR (1988) Induction of chromosomal structural changes by a chromosome of Aegilops cylindrica L. in common wheat. J Hered 79:36-6370
10. Endo TR, Gill (1996) The deletion stocks of common wheat. J Hered 87:295-307 1:CAS:528:DyaK28Xls1Clt7s%3D
11. Eujayl I, Sorrells ME, Baum M, Wolters P, Powel W (2002) Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat. Theor Appl Genet 104:399-407 1:CAS:528:DC%2BD38XislOgt74%3D
12. Faris JD, Haen KM, Gill BS (2000) Saturation mapping of a gene-rich recombination hot spot region in wheat. Genetics 154:823-835 1:CAS:528:DC%2BD3cXht1yqtLY%3D
13. Fox ME, Virgin JB, Metzger J, Smith GR (1997) Position and orientation-independent activity of the Schizosaccharomyces pombe meiotic recombination hot spot M26. Proc Natl Acad Sci USA 94:7446-7451 1:CAS:528:DyaK2sXksFOmu7c%3D
14. Gandon B, Cerrutti L, Chiquet V, Cadalen T, Sourdille P et al (2002) Development of microsatellite markers from database-annotated-EST sequences in wheat. In: Plant, animal & microbe genomes X, final abstracts guide. Applied Biosystems, Foster City, Calif., p 125
15. Gill KS, Gill BS (1993) Mapping in the realm of polyploidy: The wheat model. BioEssays 16:841-846
16. Gill KS, Gill BS, Endo TR (1993a) A chromosome region-specific mapping strategy reveals gene-rich telomeric ends in wheat. Chromosoma 102:374-381 1:CAS:528:DyaK2cXht1Kltbs%3D
17. Gill KS, Gill BS, Endo TR, Mukai Y (1993b) Fine physical mapping of Ph1, a chromosome pairing regulator gene in polyploid wheat. Genetics 134:1231-1236 1:CAS:528:DyaK2cXht1KltLo%3D
18. Gill KS, Gill BS, Endo TR, Taylor T (1996a) Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat. Genetics 144:1883-1891 1:CAS:528:DyaK2sXkslylsw%3D%3D
19. Gill KS, Gill BS, Endo TR, Boyko EV (1996b) Identification and high-density mapping of gene-rich regions in chromosome group 5 of wheat. Genetics 143:1001-1012 1:CAS:528:DyaK28XjvV2htLc%3D
20. Groos C, Gay G, Perretant MR, Gervais L, Bernard M et al (2002) Study of the relationship between pre-harvest sprouting and grain color by quantitative trait loci analysis in a white × red grain bread wheat cross. Theor Appl Genet 104:39-47 1:CAS:528:DC%2BD38XitFyjtL4%3D
21. Guyomarc'h H, Sourdille P, Charmet G, Edwards KJ, Bernard M (2002) Characterization of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D genome of bread wheat. Theor Appl Genet 104:1164-1172 1:CAS:528:DC%2BD38XltVKktbw%3D
22. Hohmann U, Endo TR, Herrmann RG, Gill BS (1995a) Characterization of deletions in common wheat induced by an Aegilops cylindrica chromosome: detection of multiple chromosome rearrangements. Theor Appl Genet 91:611-617 1:CAS:528:DyaK2MXpsVertb8%3D
23. Hohmann U, Graner A, Endo TR, Gill BS, Herrmann RG (1995b) Comparison of wheat physical maps with barley linkage maps for group 7 chromosomes. Theor Appl Genet 91:618-626 1:CAS:528:DyaK2MXpsVertbw%3D
24. Kam-Morgan LNW, Gill BS, Muthukrishnan S (1989) DNA restriction fragment length polymorphisms: A strategy for genetic mapping of the D-genome of wheat. Genome 32:724-732 1:CAS:528:DyaL1MXlvVyltbw%3D
25. Kojima T, Habu Y, Iida S, Ogihara Y (2000) Direct isolation of differentially expressed genes from a specific chromosome region of common wheat: Application of the amplified fragment length polymorphism-based mRNA fingerprinting (AMF) method in combination with a deletion line of wheat. Mol Gen Genet 263:635-641 1:CAS:528:DC%2BD3cXkt1egsbw%3D
26. Kota RS, Gill KS, Gill BS (1993) A cytogenetically based physical map of chromosome 1B in common wheat. Genome 36:548-554 1:CAS:528:DyaK3sXmtFyqs7w%3D
27. Kruglyak S, Durret RT, Schug MD, Aquadro CF (1998) Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations. Proc Natl Acad Sci USA 95:10774-10778 10.1073/pnas.95.18.10774
28. Liu Y, Tsunewaki K (1991) Restriction fragment length polymorphism (RFLP) analysis in wheat. II. Linkage maps of the RFLP sites in common wheat. Jpn J Genet 66:617-633 1:CAS:528:DyaK38XhsVGhsLg%3D
29. Ma XF, Ross K, Gustafson JP (2001) Physical mapping of restriction fragment length polymorphism (RFLP) markers in homoeologous groups 1 and 3 chromosomes of wheat by in situ hybridization. Genome 44:401-412 1:CAS:528:DC%2BD3MXltFWjsb0%3D
30. Marino CL, Nelson JC, Lu YH, Sorrels ME, Leroy P et al (1996) RFLP-based linkage maps of the homoeologous group 6 chromosomes of hexaploid wheat (Triticum aestivum L. em. Thell). Genome 39:359-366 1:CAS:528:DyaK28XjtVyjur4%3D
31. Messmer MM, Keller M, Zanetti S, Keller B (1999) Genetic linkage map of a wheat × spelt cross. Theor Appl Genet 98:1163-1170 1:CAS:528:DyaK1MXktFSmsb8%3D
32. Mickelson-Young L, Endo TR, Gill BS (1995) A cytogenetic ladder-map of the wheat homoeologous group-4 chromosomes. Theor Appl Genet 90:1007-1011 1:CAS:528:DyaK2MXnsF2ru74%3D
33. Mizuno K, Emura Y, Baur M, Kohli J, Ohta K et al (1997) The meiotic recombination hot spot created by the single-base substitution ade6-M26 results in remodelling of chromatin structure in fission yeast. Genes Dev 11:876-886 1:CAS:528:DyaK2sXivVSjs70%3D
34. Nelson JC, Van Deynze AE, Autrique E, Sorrels ME, Lu YH et al (1995a) Molecular mapping of wheat. Homoeologous group 2. Genome 38:516-524 1:CAS:528:DyaK2MXnt1Chur8%3D
35. Nelson JC, Van Deynze AE, Autrique E, Sorrels ME, Lu YH et al (1995b) Molecular mapping of wheat. Homoeologous group 3. Genome 38:525-533 1:CAS:528:DyaK2MXnt1Churw%3D
36. Nelson JC, Van Deynze AE, Autrique E, Sorrels ME, Lu YH et al (1995c) Molecular mapping of wheat: Major genes and rearrangements in homoeologous groups 4, 5 and 7. Genetics 141:721-731 1:CAS:528:DyaK28Xht1CgtLg%3D
37. Pestsova E, Korzun V, Goncharov NP, Hammer K, Ganal MW et al (2000) Microsatellite analysis of Aegilops tauschii germplasm. Theor Appl Genet 101:100-106 1:CAS:528:DC%2BD3cXlvVyks7Y%3D
38. Plaschke J, Ganal M, Röder M (1995) Detection of genetic diversity in closely related bread wheat using microsatellite markers. Theor Appl Genet 91:1001-1007 1:CAS:528:DyaK28XmtVChtA%3D%3D
39. Qi LL, Echalier B, Friebe B, Gill B (2002) Molecular characterization of a set of wheat deletion stocks for use in chromosome bin mapping of ESTs. Funct Integr Genomics 3:39-55 12590342
40. Röder MS, Plaschke J, König SU, Börner A, Sorrels ME et al (1995) Abundance, variability and chromosomal location of microsatellite in wheat. Mol Gen Genet 246:327-333 7854317
41. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier MH et al (1998a) A microsatellite map of wheat. Genetics 149:2007-2023 9691054
42. Röder MS, Korsun V, Gill BS, Ganal MW (1998b) The physical mapping of microsatellite markers in wheat. Genome 41:278-283 10.1139/ gen-41-2-278
43. Rogers SO, Bendich AJ (1985) Extraction of DNA from milligram amounts of fresh, herbarium, and mummified plant tissues. Plant Mol Biol 5:69-76 1:CAS:528:DyaL2MXlvFalsrk%3D
44. Sarma RN, Gill BS, Sasaki T, Galiba G, Sutka J et al (1998) Comparative mapping of the wheat chromosome 5A Vrn-A1 region with rice and its relationship to QTL for flowering time. Theor Appl Genet 97:103-109 1:CAS:528:DyaK1cXlslaju70%3D
45. Sarma RN, Fish L, Gill BS, Snape JW (2000) Physical characterization of the homoeologous group 5 chromosomes of wheat in terms of rice linkage blocks, and physical mapping of some important genes. Genome 43:191-198 10.1139/gen-43-1-191
46. Schlötterer C, Ritter R, Harr B, Brem G (1998) High mutation rate of a long microsatellite allele in Drosophila melanogaster provides evidence for allele-specific mutation rates. Mol Biol Evol 15:1269-1274 9787433
47. Schnable PS, Hsia AP, Nikolau BJ (1998) Genetic recombination in plants. Curr Opin Plant Biol 1(2):123-129 1:STN:280:DyaK1M7mslOgtA%3D%3D
48. Smith GR (1994) Hot spots of homologous recombination. Experientia 50:234-242 1:CAS:528:DyaK2cXktVajsrw%3D
49. Sourdille P, Guyomarc'h H, Baron C, Gandon B, Chiquet V et al (2001a) Improvement of the genetic maps of wheat using new microsatellite markers. Plant & animal genome IX, final abstracts guide. Applied Biosystems Press, Foster City, Calif., p 167
50. Sourdille P, Tavaud M, Charmet G, Bernard M (2001b) Transferability of wheat microsatellites to diploid Triticeae species carrying the A, B and D genomes. Theor Appl Genet 103:346-352 1:CAS:528:DC%2BD3MXmvVeksLk%3D
51. Stephenson P, Bryan G, Kirby J, Collins A, Devos KM et al (1998) Fifty new microsatellite loci for the wheat genetic map. Theor Appl Genet 97:946-949 10.1007/s001220050975
52. Tixier MH, Sourdille P, Röder M, Leroy P, Bernard M (1997) Detection of wheat microsatellites using a non radioactive silver-nitrate staining method. J Genet Breed 51:175-177 1:CAS:528:DyaK1cXlvVansL0%3D
53. Tsujimoto H, Usami N, Hasegawa K, Yamada T, Nagaki K et al (1999) De novo synthesis of telomere sequences at the healed breakpoints of wheat deletion chromosomes. Mol Gen Genet 262:851-856 1:CAS:528:DC%2BD3cXmvFKqsw%3D%3D
54. Van Deynze AE, Dubcovsky J, Gill KS, Nelson JC, Sorrells ME et al (1995) Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat. Genome 38:45-59
55. Weng Y, Tuleen NA, Hart GE (2000) Extended physical maps and a consensus physical map of the homoeologous group-6 chromosomes of wheat (Triticum aestivum L. em Thell). Theor Appl Genet 100:519-527 1:CAS:528:DC%2BD3cXisVakt7g%3D
56. Werner JE, Endo TR, Gill BS (1992) Toward a cytogenetically based physical map of the wheat genome. Proc Natl Acad Sci USA 89:11307-11311 1:CAS:528:DyaK3sXltlCisQ%3D%3D
57. Wierdl M, Dominska M, Petes TD (1997) Microsatellite instability in yeast: Dependence on the length of the microsatellite. Genetics 146:769-779 1:CAS:528:DyaK2sXmsVartLw%3D
58. Zhang H, Nasuda S, Endo TR (2000) Identification of AFLP markers on the satellite region of chromosome 1BS in wheat. Genome 43:729-735 1:CAS:528:DC%2BD3cXotVWlsb0%3D