Escherichia coli starvation diets: Essential nutrients weigh in distinctly

Journal of Bacteriology

Volumn 187, Issue 22, 2005, Pages 7549-7553

  Peterson, Celeste N ^a   Mandel, Mark J ^a,b   Silhavy, Thomas J ^a  

^a PRINCETON UNIVERSITY   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; AMMONIA; CARBON; CYCLIC AMP BINDING PROTEIN; GLUCOSE; NITROGEN; PHOSPHATE; PHOSPHORUS; SIGMA FACTOR RPOS;

BACTERIAL GROWTH; BACTERIAL METABOLISM; CONSENSUS SEQUENCE; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENE MUTATION; MACROPHAGE; NONHUMAN; NUTRIENT LIMITATION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; PROTEIN FUNCTION; SHORT SURVEY; SIGNAL TRANSDUCTION; STARVATION; TRANSCRIPTION REGULATION;

ADAPTATION, PHYSIOLOGICAL; BACTERIAL PROTEINS; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, BACTERIAL; SIGMA FACTOR;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 27744450676     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.187.22.7549-7553.2005     Document Type: Short Survey

References (49)

1. Ballesteros, M., A. Fredriksson, J. Henriksson, and T. Nystrom. 2001. Bacterial senescence: protein oxidation in non-proliferating cells is dictated by the accuracy of the ribosomes. EMBO J. 20:5280-5289.
2. s factor. Mol. Microbiol. 35:657-666.
3. Brown, L., and T. Elliott. 1997. Mutations that increase expression of the rpoS gene and decrease its dependence on hfq function in Salmonella typhimurium. J. Bacteriol. 179:656-662.
4. Codispoti, L. 1989. Phosphorous vs. nitrogen limitation of new and export production, p. 377-394. In W. Berger, V. Smetacek, and G. Wefer (ed.), Productivity of the ocean: present and past. Wiley & Sons, Chichester, United Kingdom.
5. Damerau, K., and A. C. St. John. 1993. Role of Clp protease subunits in degradation of carbon starvation proteins in Escherichia coli. J. Bacteriol. 175:53-63.
6. Fang, F. C., S. J. Libby, N. A. Buchmeier, P. C. Loewen, J. Switala, J. Harwood, and D. G. Guiney. 1992. The alternative sigma factor katF (rpoS) regulates Salmonella virulence. Proc. Natl. Acad. Sci. USA 89:11978-11982.
7. s-regulated gene in Escherichia coli which is required for stationary-phase resistance to ethanol. J. Bacteriol. 180:6140-6147.
8. s RNA polymerase. Mol. Microbiol. 42:939-954.
9. s is positively regulated by ppGpp. J. Bacteriol. 175:7982-7989.
10. s-dependent manner at the level of translation. J. Bacteriol. 182:4117-4120.
11. Goodrich-Blair, H., M. Uria-Nickelsen, and R. Kolter. 1996. Regulation of gene expression in stationary phase, p. 571-583. In E. C. C. Lin and A. S. Lynch (ed.), Regulation of gene expression in Escherichia coli. Chapman and Hall, New York, N.Y.
12. Gottesman, S. 2004. The small RNA regulators of Escherichia coli: roles and mechanisms. Annu. Rev. Microbiol. 58:303-328.
13. Groat, R. G., J. E. Schultz, E. Zychlinsky, A. Bookman, and A. Matin. 1986. Starvation proteins in Escherichia coli: kinetics of synthesis and role in starvation survival. J. Bacteriol. 168:486-493.
14. Gyaneshwar, P., O. Paliy, J. McAuliffe, A. Jones, M. I. Jordan, and S. Kustu. 2005. Lessons from Escherichia coli genes similarly regulated in response to nitrogen and sulfur limitation. Proc. Natl. Acad. Sci. USA 102:3453-3458.
15. Harris, R. M., D. C. Webb, S. M. Howitt, and G. B. Cox. 2001. Characterization of PitA and PitB from Escherichia coli. J. Bacteriol. 183:5008-5014.
16. s (RpoS) subunit of RNA polymerase. Microbiol. Mol. Biol. Rev. 66:373-395.
17. Hirsch, M., and T. Elliott. 2002. Role of ppGpp in rpoS stationary-phase regulation in Escherichia coli. J. Bacteriol. 184:5077-5087.
18. Hoch, J. A., and T. J. Silhavy. 1995. Two-component signal transduction. American Society for Microbiology, Washington, D.C.
19. Hulsman, G. W., and R. Kolter. 1994. Sensing starvation: a homoserine lactone-dependent signaling pathway in Escherichia coli. Science 265:537-539.
20. Irr, J. D. 1972. Control of nucleotide metabolism and ribosomal ribonucleic acid synthesis during nitrogen starvation of Escherichia coli. J. Bacteriol. 110:554-561.
21. s proteolysis in Escherichia coli. Mol. Microbiol. 40:1381-1390.
22. s subunit of RNA polymerase in Escherichia coli. J. Bacteriol. 177:4676-4680.
23. Lange, R., and R. Hengge-Aronis. 1991. Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol. Microbiol. 5:49-59.
24. Majdalani, N., C. Cunning, D. Sledjeski, T. Elliott, and S. Gottesman. 1998. DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc. Natl. Acad. Sci. USA 95:12462-12467.
25. Majdalani, N., D. Hernandez, and S. Gottesman. 2002. Regulation and mode of action of the second small RNA activator of RpoS translation, RprA. Mol. Microbiol. 46:813-826.
26. Mandel, M. J., and T. J. Silhavy. 2005. Starvation for different nutrients in Escherichia coli results in differential modulation of RpoS levels and stability. J. Bacteriol. 187:434-442.
27. Matin, A. 1991. The molecular basis of carbon-starvation-induced general resistance in Escherichia coli. Mol. Microbiol. 5:3-10.
28. Matin, A., E. A. Auger, P. H. Blum, and J. E. Schultz. 1989. Genetic basis of starvation survival in nondifferentiating bacteria. Annu. Rev. Microbiol. 43:293-316.
29. McCann, M. P., C. D. Fraley, and A. Matin. 1993. The putative sigma factor KatF is regulated posttranscriptionally during carbon starvation. J. Bacteriol. 175:2143-2149.
30. McCann, M. P., J. P. Kidwell, and A. Matin. 1991. The putative sigma factor KatF has a central role in development of starvation-mediated general resistance in Escherichia coli. J. Bacteriol. 173:4188-4194.
31. s, the response regulator MviA(RssB) and ClpX. J. Mol. Microbiol. Biotechnol. 2:245-254.
32. s subunit of RNA polymerase in Escherichia coli. EMBO J. 15:1333-1339.
33. Nystrom, T. 2004. Stationary-phase physiology. Annu. Rev. Microbiol. 58:161-181.
34. Peterson, C. N., N. Ruiz, and T. J. Silhavy. 2004. RpoS proteolysis is regulated by a mechanism that does not require the SprE (RssB) response regulator phosphorylation site. J. Bacteriol. 186:7403-7410.
35. Pratt, L. A., and T. J. Silhavy. 1996. The response regulator SprE controls the stability of RpoS. Proc. Natl. Acad. Sci. USA 93:2488-2492.
36. s turnover in Escherichia coli. Mol. Microbiol. 45:1701-1713.
37. Rao, N. N., and A. Kornherg. 1996. Inorganic polyphosphate supports resistance and survival of stationary-phase Escherichia coli. J. Bacteriol. 178:1394-1400.
38. Ruiz, N., C. N. Peterson, and T. J. Silhavy. 2001. RpoS-dependent transcriptional control of sprE: regulatory feedback loop. J. Bacteriol. 183:5974-5981.
39. Ruiz, N., and T. J. Silhavy. 2003. Constitutive activation of the Escherichia coli Pho regulon upregulates rpoS translation in an Hfq-dependent fashion. J. Bacteriol. 185:5984-5992.
40. Sak, B. D., A. Eisenstark, and D. Touati. 1989. Exonuclease III and the catalase hydroperoxidase II in Escherichia coli are both regulated by the katF gene product. Proc. Natl. Acad. Sci. USA 86:3271-3275.
41. s by ClpXP protease. J. Bacteriol. 178:470-476.
42. Touati, E., E. Dassa, and P. L. Boquet. 1986. Pleiotropic mutations in appR reduce pH 2.5 acid phosphatase expression and restore succinate utilisation in CRP-deficient strains of Escherichia coli. Mol. Gen. Genet. 202:257-264.
43. Ueguchi, C., N. Misonou, and T. Mizuno. 2001. Negative control of rpoS expression by phosphoenolpyruvate: carbohydrate phosphotransferase system in Escherichia coli. J. Bacteriol. 183:520-527.
44. Wanner, B. L. 1996. Phosphorus assimilation and control of the phosphate regulon, p. 1357-1381. In F. C. Neidhardt, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella, 2nd ed., vol. 1. American Society for Microbiology, Washington D.C.
45. Wei, B., S. Shin, D. LaPorte, A. J. Wolfe, and T. Romeo. 2000. Global regulatory mutations in csrA and rpoS cause severe central carbon stress in Escherichia coli in the presence of acetate. J. Bacteriol. 182:1632-1640.
46. Wickner, S., and M. R. Maurizi. 1999. Here's the hook: similar substrate binding sites in the chaperone domains of Clp and Lon. Proc. Natl. Acad. Sci. USA 96:8318-8320.
47. s level in starving Escherichia coli cells increases solely as a result of its increased stability, despite decreased synthesis. Mol. Microbiol. 24:643-651.
48. s for degradation by ClpXP. Genes Dev. 15:627-637.
49. Zimmer, D. P., E. Soupene, H. L. Lee, V. F. Wendisch, A. B. Khodursky, B. J. Peter, R. A. Bender, and S. Kustu. 2000. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Proc. Natl. Acad. Sci. USA 97:14674-14679.