-
2
-
-
84857062410
-
A new eye on NLR proteins: focused on clarity or diffused by complexity?
-
Bonardi V., Cherkis K., Nishimura M.T., Dangl J.L. A new eye on NLR proteins: focused on clarity or diffused by complexity?. Curr. Opin. Immunol. 2012, 24:41-50.
-
(2012)
Curr. Opin. Immunol.
, vol.24
, pp. 41-50
-
-
Bonardi, V.1
Cherkis, K.2
Nishimura, M.T.3
Dangl, J.L.4
-
3
-
-
84879508269
-
Direct proteolytic cleavage of NLRP1B is necessary and sufficient for inflammasome activation by anthrax lethal factor
-
Chavarria-Smith J., Vance R.E. Direct proteolytic cleavage of NLRP1B is necessary and sufficient for inflammasome activation by anthrax lethal factor. PLoS Pathog. 2013, 9:e1003452.
-
(2013)
PLoS Pathog.
, vol.9
-
-
Chavarria-Smith, J.1
Vance, R.E.2
-
4
-
-
32944479048
-
Host-microbe interactions: shaping the evolution of the plant immune response
-
Chisholm S.T., Coaker G., Day B., Staskawicz B.J. Host-microbe interactions: shaping the evolution of the plant immune response. Cell 2006, 124:803-814.
-
(2006)
Cell
, vol.124
, pp. 803-814
-
-
Chisholm, S.T.1
Coaker, G.2
Day, B.3
Staskawicz, B.J.4
-
5
-
-
0032825011
-
K-estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals
-
Comeron J.M. K-estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals. Bioinformatics 1999, 15:763-764.
-
(1999)
Bioinformatics
, vol.15
, pp. 763-764
-
-
Comeron, J.M.1
-
6
-
-
59649103157
-
Wheel of life, wheel of death: a mechanistic insight into signaling by STAND proteins
-
Danot O., Marquenet E., Vidal-Ingigliardi D., Richet E. Wheel of life, wheel of death: a mechanistic insight into signaling by STAND proteins. Structure 2009, 17:172-182.
-
(2009)
Structure
, vol.17
, pp. 172-182
-
-
Danot, O.1
Marquenet, E.2
Vidal-Ingigliardi, D.3
Richet, E.4
-
7
-
-
84867647908
-
Rules of engagement: molecular insights from host-virus arms races
-
Daugherty M.D., Malik H.S. Rules of engagement: molecular insights from host-virus arms races. Annu. Rev. Genet. 2012, 46:677-700.
-
(2012)
Annu. Rev. Genet.
, vol.46
, pp. 677-700
-
-
Daugherty, M.D.1
Malik, H.S.2
-
8
-
-
0035108614
-
Six amino acid changes confined to the leucine-rich repeat beta-strand/beta-turn motif determine the difference between the P and P2 rust resistance specificities in flax
-
Dodds P.N., Lawrence G.J., Ellis J.G. Six amino acid changes confined to the leucine-rich repeat beta-strand/beta-turn motif determine the difference between the P and P2 rust resistance specificities in flax. Plant Cell 2001, 13:163-178.
-
(2001)
Plant Cell
, vol.13
, pp. 163-178
-
-
Dodds, P.N.1
Lawrence, G.J.2
Ellis, J.G.3
-
9
-
-
0033101488
-
Identification of regions in alleles of the flax rust resistance gene L that determine differences in gene-for-gene specificity
-
Ellis J.G., Lawrence G.J., Luck J.E., Dodds P.N. Identification of regions in alleles of the flax rust resistance gene L that determine differences in gene-for-gene specificity. Plant Cell 1999, 11:495-506.
-
(1999)
Plant Cell
, vol.11
, pp. 495-506
-
-
Ellis, J.G.1
Lawrence, G.J.2
Luck, J.E.3
Dodds, P.N.4
-
10
-
-
33847376042
-
Reconstituted NALP1 inflammasome reveals two-step mechanism of caspase-1 activation
-
Faustin B., Lartigue L., Bruey J.M., Luciano F., Sergienko E., Bailly-Maitre B., Volkmann N., Hanein D., Rouiller I., Reed J.C. Reconstituted NALP1 inflammasome reveals two-step mechanism of caspase-1 activation. Mol. Cell 2007, 25:713-724.
-
(2007)
Mol. Cell
, vol.25
, pp. 713-724
-
-
Faustin, B.1
Lartigue, L.2
Bruey, J.M.3
Luciano, F.4
Sergienko, E.5
Bailly-Maitre, B.6
Volkmann, N.7
Hanein, D.8
Rouiller, I.9
Reed, J.C.10
-
11
-
-
33644663232
-
Identification of the critical residues involved in peptidoglycan detection by Nod1
-
Girardin S.E., Jehanno M., Mengin-Lecreulx D., Sansonetti P.J., Alzari P.M., Philpott D.J. Identification of the critical residues involved in peptidoglycan detection by Nod1. J.Biol. Chem. 2005, 280:38648-38656.
-
(2005)
J.Biol. Chem.
, vol.280
, pp. 38648-38656
-
-
Girardin, S.E.1
Jehanno, M.2
Mengin-Lecreulx, D.3
Sansonetti, P.J.4
Alzari, P.M.5
Philpott, D.J.6
-
12
-
-
84869044838
-
Formation and structure of a NAIP5-NLRC4 inflammasome induced by direct interactions with conserved N- and C-terminal regions of flagellin
-
Halff E.F., Diebolder C.A., Versteeg M., Schouten A., Brondijk T.H., Huizinga E.G. Formation and structure of a NAIP5-NLRC4 inflammasome induced by direct interactions with conserved N- and C-terminal regions of flagellin. J.Biol. Chem. 2012, 287:38460-38472.
-
(2012)
J.Biol. Chem.
, vol.287
, pp. 38460-38472
-
-
Halff, E.F.1
Diebolder, C.A.2
Versteeg, M.3
Schouten, A.4
Brondijk, T.H.5
Huizinga, E.G.6
-
13
-
-
84880280093
-
Crystal structure of NLRC4 reveals its autoinhibition mechanism
-
Hu Z., Yan C., Liu P., Huang Z., Ma R., Zhang C., Wang R., Zhang Y., Martinon F., Miao D., et al. Crystal structure of NLRC4 reveals its autoinhibition mechanism. Science 2013, 341:172-175.
-
(2013)
Science
, vol.341
, pp. 172-175
-
-
Hu, Z.1
Yan, C.2
Liu, P.3
Huang, Z.4
Ma, R.5
Zhang, C.6
Wang, R.7
Zhang, Y.8
Martinon, F.9
Miao, D.10
-
14
-
-
84882614243
-
Mitochondrial cardiolipin is required for nlrp3 inflammasome activation
-
Iyer S.S., He Q., Janczy J.R., Elliott E.I., Zhong Z., Olivier A.K., Sadler J.J., Knepper-Adrian V., Han R., Qiao L., et al. Mitochondrial cardiolipin is required for nlrp3 inflammasome activation. Immunity 2013, 39:311-323.
-
(2013)
Immunity
, vol.39
, pp. 311-323
-
-
Iyer, S.S.1
He, Q.2
Janczy, J.R.3
Elliott, E.I.4
Zhong, Z.5
Olivier, A.K.6
Sadler, J.J.7
Knepper-Adrian, V.8
Han, R.9
Qiao, L.10
-
15
-
-
0034254266
-
Direct interaction of resistance gene and avirulence gene products confers rice blast resistance
-
Jia Y., McAdams S.A., Bryan G.T., Hershey H.P., Valent B. Direct interaction of resistance gene and avirulence gene products confers rice blast resistance. EMBO J. 2000, 19:4004-4014.
-
(2000)
EMBO J.
, vol.19
, pp. 4004-4014
-
-
Jia, Y.1
McAdams, S.A.2
Bryan, G.T.3
Hershey, H.P.4
Valent, B.5
-
16
-
-
33751100626
-
The plant immune system
-
Jones J.D., Dangl J.L. The plant immune system. Nature 2006, 444:323-329.
-
(2006)
Nature
, vol.444
, pp. 323-329
-
-
Jones, J.D.1
Dangl, J.L.2
-
17
-
-
63849246525
-
Protein structure prediction on the Web: a case study using the Phyre server
-
Kelley L.A., Sternberg M.J. Protein structure prediction on the Web: a case study using the Phyre server. Nat. Protoc. 2009, 4:363-371.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
18
-
-
58149193233
-
The SWISS-MODEL Repository and associated resources
-
Kiefer F., Arnold K., Kunzli M., Bordoli L., Schwede T. The SWISS-MODEL Repository and associated resources. Nucleic Acids Res. 2009, 37:D387-D392.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Kiefer, F.1
Arnold, K.2
Kunzli, M.3
Bordoli, L.4
Schwede, T.5
-
19
-
-
80053379974
-
Innate immune recognition of bacterial ligands by NAIPs determines inflammasome specificity
-
Kofoed E.M., Vance R.E. Innate immune recognition of bacterial ligands by NAIPs determines inflammasome specificity. Nature 2011, 477:592-595.
-
(2011)
Nature
, vol.477
, pp. 592-595
-
-
Kofoed, E.M.1
Vance, R.E.2
-
20
-
-
84880475672
-
Blue native polyacrylamide gel electrophoresis to monitor inflammasome assembly and composition
-
Kofoed E.M., Vance R.E. Blue native polyacrylamide gel electrophoresis to monitor inflammasome assembly and composition. Methods Mol. Biol. 2013, 1040:169-183.
-
(2013)
Methods Mol. Biol.
, vol.1040
, pp. 169-183
-
-
Kofoed, E.M.1
Vance, R.E.2
-
21
-
-
33845361366
-
GARD: a genetic algorithm for recombination detection
-
Kosakovsky Pond S.L., Posada D., Gravenor M.B., Woelk C.H., Frost S.D. GARD: a genetic algorithm for recombination detection. Bioinformatics 2006, 22:3096-3098.
-
(2006)
Bioinformatics
, vol.22
, pp. 3096-3098
-
-
Kosakovsky Pond, S.L.1
Posada, D.2
Gravenor, M.B.3
Woelk, C.H.4
Frost, S.D.5
-
22
-
-
77956823972
-
Activation of an Arabidopsis resistance protein is specified by the in planta association of its leucine-rich repeat domain with the cognate oomycete effector
-
Krasileva K.V., Dahlbeck D., Staskawicz B.J. Activation of an Arabidopsis resistance protein is specified by the in planta association of its leucine-rich repeat domain with the cognate oomycete effector. Plant Cell 2010, 22:2444-2458.
-
(2010)
Plant Cell
, vol.22
, pp. 2444-2458
-
-
Krasileva, K.V.1
Dahlbeck, D.2
Staskawicz, B.J.3
-
23
-
-
4644247731
-
STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer
-
Leipe D.D., Koonin E.V., Aravind L. STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer. J.Mol. Biol. 2004, 343:1-28.
-
(2004)
J.Mol. Biol.
, vol.343
, pp. 1-28
-
-
Leipe, D.D.1
Koonin, E.V.2
Aravind, L.3
-
24
-
-
84861214708
-
Anthrax lethal factor cleavage of Nlrp1 is required for activation of the inflammasome
-
Levinsohn J.L., Newman Z.L., Hellmich K.A., Fattah R., Getz M.A., Liu S., Sastalla I., Leppla S.H., Moayeri M. Anthrax lethal factor cleavage of Nlrp1 is required for activation of the inflammasome. PLoS Pathog. 2012, 8:e1002638.
-
(2012)
PLoS Pathog.
, vol.8
-
-
Levinsohn, J.L.1
Newman, Z.L.2
Hellmich, K.A.3
Fattah, R.4
Getz, M.A.5
Liu, S.6
Sastalla, I.7
Leppla, S.H.8
Moayeri, M.9
-
25
-
-
0036671894
-
The inflammasome: a molecular platform triggering activation of inflammatory caspases and processing of proIL-beta
-
Martinon F., Burns K., Tschopp J. The inflammasome: a molecular platform triggering activation of inflammatory caspases and processing of proIL-beta. Mol. Cell 2002, 10:417-426.
-
(2002)
Mol. Cell
, vol.10
, pp. 417-426
-
-
Martinon, F.1
Burns, K.2
Tschopp, J.3
-
26
-
-
0032205838
-
Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis
-
McDowell J.M., Dhandaydham M., Long T.A., Aarts M.G., Goff S., Holub E.B., Dangl J.L. Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis. Plant Cell 1998, 10:1861-1874.
-
(1998)
Plant Cell
, vol.10
, pp. 1861-1874
-
-
McDowell, J.M.1
Dhandaydham, M.2
Long, T.A.3
Aarts, M.G.4
Goff, S.5
Holub, E.B.6
Dangl, J.L.7
-
27
-
-
84867659115
-
Evolution-guided identification of antiviral specificity determinants in the broadly acting interferon-induced innate immunity factor MxA
-
Mitchell P.S., Patzina C., Emerman M., Haller O., Malik H.S., Kochs G. Evolution-guided identification of antiviral specificity determinants in the broadly acting interferon-induced innate immunity factor MxA. Cell Host Microbe 2012, 12:598-604.
-
(2012)
Cell Host Microbe
, vol.12
, pp. 598-604
-
-
Mitchell, P.S.1
Patzina, C.2
Emerman, M.3
Haller, O.4
Malik, H.S.5
Kochs, G.6
-
28
-
-
0035958867
-
Identification of Ipaf, a human caspase-1-activating protein related to Apaf-1
-
Poyet J.L., Srinivasula S.M., Tnani M., Razmara M., Fernandes-Alnemri T., Alnemri E.S. Identification of Ipaf, a human caspase-1-activating protein related to Apaf-1. J.Biol. Chem. 2001, 276:28309-28313.
-
(2001)
J.Biol. Chem.
, vol.276
, pp. 28309-28313
-
-
Poyet, J.L.1
Srinivasula, S.M.2
Tnani, M.3
Razmara, M.4
Fernandes-Alnemri, T.5
Alnemri, E.S.6
-
29
-
-
77951881456
-
Crystal structure of the Caenorhabditis elegans apoptosome reveals an octameric assembly of CED-4
-
Qi S., Pang Y., Hu Q., Liu Q., Li H., Zhou Y., He T., Liang Q., Liu Y., Yuan X., et al. Crystal structure of the Caenorhabditis elegans apoptosome reveals an octameric assembly of CED-4. Cell 2010, 141:446-457.
-
(2010)
Cell
, vol.141
, pp. 446-457
-
-
Qi, S.1
Pang, Y.2
Hu, Q.3
Liu, Q.4
Li, H.5
Zhou, Y.6
He, T.7
Liang, Q.8
Liu, Y.9
Yuan, X.10
-
30
-
-
84885439494
-
Cutting edge: mouse NAIP1 detects the type III secretion system needle protein
-
Rayamajhi M., Zak D.E., Chavarria-Smith J., Vance R.E., Miao E.A. Cutting edge: mouse NAIP1 detects the type III secretion system needle protein. J Immunol. 2013, 191:3986-3989.
-
(2013)
J Immunol.
, vol.191
, pp. 3986-3989
-
-
Rayamajhi, M.1
Zak, D.E.2
Chavarria-Smith, J.3
Vance, R.E.4
Miao, E.A.5
-
31
-
-
80051534863
-
Crystal structure of full-length Apaf-1: how the death signal is relayed in the mitochondrial pathway of apoptosis
-
Reubold T.F., Wohlgemuth S., Eschenburg S. Crystal structure of full-length Apaf-1: how the death signal is relayed in the mitochondrial pathway of apoptosis. Structure 2011, 19:1074-1083.
-
(2011)
Structure
, vol.19
, pp. 1074-1083
-
-
Reubold, T.F.1
Wohlgemuth, S.2
Eschenburg, S.3
-
32
-
-
77950362382
-
The inflammasomes
-
Schroder K., Tschopp J. The inflammasomes. Cell 2010, 140:821-832.
-
(2010)
Cell
, vol.140
, pp. 821-832
-
-
Schroder, K.1
Tschopp, J.2
-
33
-
-
84867427919
-
Sensing of microbial molecular patterns by Toll-like receptors
-
Song D.H., Lee J.O. Sensing of microbial molecular patterns by Toll-like receptors. Immunol. Rev. 2012, 250:216-229.
-
(2012)
Immunol. Rev.
, vol.250
, pp. 216-229
-
-
Song, D.H.1
Lee, J.O.2
-
34
-
-
77950343791
-
Pattern recognition receptors and inflammation
-
Takeuchi O., Akira S. Pattern recognition receptors and inflammation. Cell 2010, 140:805-820.
-
(2010)
Cell
, vol.140
, pp. 805-820
-
-
Takeuchi, O.1
Akira, S.2
-
35
-
-
2342583513
-
Regulatory regions and critical residues of NOD2 involved in muramyl dipeptide recognition
-
Tanabe T., Chamaillard M., Ogura Y., Zhu L., Qiu S., Masumoto J., Ghosh P., Moran A., Predergast M.M., Tromp G., et al. Regulatory regions and critical residues of NOD2 involved in muramyl dipeptide recognition. EMBO J. 2004, 23:1587-1597.
-
(2004)
EMBO J.
, vol.23
, pp. 1587-1597
-
-
Tanabe, T.1
Chamaillard, M.2
Ogura, Y.3
Zhu, L.4
Qiu, S.5
Masumoto, J.6
Ghosh, P.7
Moran, A.8
Predergast, M.M.9
Tromp, G.10
-
36
-
-
84867063450
-
Rapid induction of inflammatory lipid mediators by the inflammasome invivo
-
von Moltke J., Trinidad N.J., Moayeri M., Kintzer A.F., Wang S.B., van Rooijen N., Brown C.R., Krantz B.A., Leppla S.H., Gronert K., et al. Rapid induction of inflammatory lipid mediators by the inflammasome invivo. Nature 2012, 490:107-111.
-
(2012)
Nature
, vol.490
, pp. 107-111
-
-
von Moltke, J.1
Trinidad, N.J.2
Moayeri, M.3
Kintzer, A.F.4
Wang, S.B.5
van Rooijen, N.6
Brown, C.R.7
Krantz, B.A.8
Leppla, S.H.9
Gronert, K.10
-
37
-
-
84875542536
-
Recognition of bacteria by inflammasomes
-
von Moltke J., Ayres J.S., Kofoed E.M., Chavarria-Smith J., Vance R.E. Recognition of bacteria by inflammasomes. Annu. Rev. Immunol. 2013, 31:73-106.
-
(2013)
Annu. Rev. Immunol.
, vol.31
, pp. 73-106
-
-
von Moltke, J.1
Ayres, J.S.2
Kofoed, E.M.3
Chavarria-Smith, J.4
Vance, R.E.5
-
38
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24:1586-1591.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
39
-
-
84878408642
-
The many faces of HMGB1: molecular structure-functional activity in inflammation, apoptosis, and chemotaxis
-
Yang H., Antoine D.J., Andersson U., Tracey K.J. The many faces of HMGB1: molecular structure-functional activity in inflammation, apoptosis, and chemotaxis. J.Leukoc. Biol. 2013, 93:865-873.
-
(2013)
J.Leukoc. Biol.
, vol.93
, pp. 865-873
-
-
Yang, H.1
Antoine, D.J.2
Andersson, U.3
Tracey, K.J.4
-
40
-
-
84883329029
-
-
Human NAIP and mouse NAIP1 recognize bacterial type III secretion needle protein for inflammasome activation. Proceedings of the National Academy of Sciences of the United States of America.
-
Yang, J., Zhao, Y., Shi, J., and Shao, F. (2013b). Human NAIP and mouse NAIP1 recognize bacterial type III secretion needle protein for inflammasome activation. Proceedings of the National Academy of Sciences of the United States of America. doi:10.1073/pnas.1306376110.
-
(2013)
-
-
Yang, J.1
Zhao, Y.2
Shi, J.3
Shao, F.4
-
41
-
-
80053349020
-
The NLRC4 inflammasome receptors for bacterial flagellin and type III secretion apparatus
-
Zhao Y., Yang J., Shi J., Gong Y.N., Lu Q., Xu H., Liu L., Shao F. The NLRC4 inflammasome receptors for bacterial flagellin and type III secretion apparatus. Nature 2011, 477:596-600.
-
(2011)
Nature
, vol.477
, pp. 596-600
-
-
Zhao, Y.1
Yang, J.2
Shi, J.3
Gong, Y.N.4
Lu, Q.5
Xu, H.6
Liu, L.7
Shao, F.8
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