-
1
-
-
84856158823
-
The curious chemical biology of cytosine: Deamination, methylation, and oxidation as modulators of genomic potential
-
C.S. Nabel, S.A. Manning, and R.M. Kohli The curious chemical biology of cytosine: deamination, methylation, and oxidation as modulators of genomic potential ACS Chem. Biol. 7 2012 20 30
-
(2012)
ACS Chem. Biol.
, vol.7
, pp. 20-30
-
-
Nabel, C.S.1
Manning, S.A.2
Kohli, R.M.3
-
2
-
-
0001129080
-
The bases of the nucleic acids of some bacterial and animal viruses: The occurrence of 5-hydroxymethylcytosine
-
G.R. Wyatt, and S.S. Cohen The bases of the nucleic acids of some bacterial and animal viruses: the occurrence of 5-hydroxymethylcytosine Biochem. J. 55 1953 774 782
-
(1953)
Biochem. J.
, vol.55
, pp. 774-782
-
-
Wyatt, G.R.1
Cohen, S.S.2
-
3
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
M. Tahiliani, K.P. Koh, Y. Shen, W.A. Pastor, H. Bandukwala, Y. Brudno, S. Agarwal, L.M. Iyer, D.R. Liu, L. Aravind, and A. Rao Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1 Science 324 2009 930 935
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
Rao, A.11
-
4
-
-
66149123748
-
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
-
S. Kriaucionis, and N. Heintz The nuclear DNA base 5- hydroxymethylcytosine is present in Purkinje neurons and the brain Science 324 2009 929 930
-
(2009)
Science
, vol.324
, pp. 929-930
-
-
Kriaucionis, S.1
Heintz, N.2
-
6
-
-
84874350016
-
On how mammalian transcription factors recognize methylated DNA
-
B.A. Buck-Koehntop, and P.A. Defossez On how mammalian transcription factors recognize methylated DNA Epigenetics 8 2013 131 137
-
(2013)
Epigenetics
, vol.8
, pp. 131-137
-
-
Buck-Koehntop, B.A.1
Defossez, P.A.2
-
7
-
-
0026658662
-
Characterization of MeCP2, a vertebrate DNA binding protein with affinity for methylated DNA
-
R.R. Meehan, J.D. Lewis, and A.P. Bird Characterization of MeCP2, a vertebrate DNA binding protein with affinity for methylated DNA Nucleic Acids Res. 20 1992 5085 5092
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5085-5092
-
-
Meehan, R.R.1
Lewis, J.D.2
Bird, A.P.3
-
8
-
-
4043112183
-
Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2)
-
V. Valinluck, H.-H. Tsai, D.K. Rogstad, A. Burdzy, A. Bird, and L.C. Sowers Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2) Nucleic Acids Res. 32 2004 4100 4108
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4100-4108
-
-
Valinluck, V.1
Tsai, H.-H.2
Rogstad, D.K.3
Burdzy, A.4
Bird, A.5
Sowers, L.C.6
-
9
-
-
84868556202
-
An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence
-
Y. Liu, H. Toh, H. Sasaki, X. Zhang, and X. Cheng An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence Genes Dev. 26 2012 2374 2379
-
(2012)
Genes Dev.
, vol.26
, pp. 2374-2379
-
-
Liu, Y.1
Toh, H.2
Sasaki, H.3
Zhang, X.4
Cheng, X.5
-
10
-
-
79959431845
-
Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain
-
C. Frauer, T. Hoffmann, S. Bultmann, V. Casa, M.C. Cardoso, I. Antes, and H. Leonhardt Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain PLoS One 6 2011 e21306
-
(2011)
PLoS One
, vol.6
, pp. 21306
-
-
Frauer, C.1
Hoffmann, T.2
Bultmann, S.3
Casa, V.4
Cardoso, M.C.5
Antes, I.6
Leonhardt, H.7
-
11
-
-
84858136496
-
Chromatographic methods for the analysis of oxidatively damaged DNA
-
J.L. Ravanat Chromatographic methods for the analysis of oxidatively damaged DNA Free Radic. Res. 46 2012 479 491
-
(2012)
Free Radic. Res.
, vol.46
, pp. 479-491
-
-
Ravanat, J.L.1
-
12
-
-
17744417519
-
Cellular background level of 8-oxo-7,8-dihydro-2′-deoxyguanosine: An isotope based method to evaluate artefactual oxidation of DNA during its extraction and subsequent work-up
-
J.-L. Ravanat, T. Douki, P. Duez, E. Gremaud, K. Herbert, T. Hofer, L. Lasserre, C. Saint-Pierre, A. Favier, and J. Cadet Cellular background level of 8-oxo-7,8-dihydro-2′-deoxyguanosine: an isotope based method to evaluate artefactual oxidation of DNA during its extraction and subsequent work-up Carcinogenesis 23 2002 1911 1918
-
(2002)
Carcinogenesis
, vol.23
, pp. 1911-1918
-
-
Ravanat, J.-L.1
Douki, T.2
Duez, P.3
Gremaud, E.4
Herbert, K.5
Hofer, T.6
Lasserre, L.7
Saint-Pierre, C.8
Favier, A.9
Cadet, J.10
-
13
-
-
0029860415
-
Photosensitized oxidation of 5-methyl-2′-deoxycytidine by 2-methyl-1,4-naphthoquinone: Characterisation of 5-hydroperoxymethyl-2′- deoxycytidine and stable methyl group oxidation products
-
C. Bienvenu, and J. Cadet Photosensitized oxidation of 5-methyl-2′-deoxycytidine by 2-methyl-1,4-naphthoquinone: characterisation of 5-hydroperoxymethyl-2′-deoxycytidine and stable methyl group oxidation products J. Am. Chem. Soc. 118 1996 11046 11411
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 11046-11411
-
-
Bienvenu, C.1
Cadet, J.2
-
14
-
-
77954362183
-
Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine
-
S.-G. Jin, S. Kadam, and G.P. Pfeifer Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine Nucleic Acids Res. 38 2010 e125
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 125
-
-
Jin, S.-G.1
Kadam, S.2
Pfeifer, G.P.3
-
15
-
-
79951959703
-
TOX4 and its binding partners recognize DNA adducts generated by platinum anticancer drugs
-
C. Bounaix Morand du Puch, E. Barbier, A. Kraut, Y. Coute, J. Fuchs, A. Buhot, T. Livache, M. Seve, A. Favier, T. Douki, D. Gasparutto, S. Sauvaigo, and J. Breton TOX4 and its binding partners recognize DNA adducts generated by platinum anticancer drugs Arch. Biochem. Biophys. 507 2011 296 303
-
(2011)
Arch. Biochem. Biophys.
, vol.507
, pp. 296-303
-
-
Bounaix Morand Du Puch, C.1
Barbier, E.2
Kraut, A.3
Coute, Y.4
Fuchs, J.5
Buhot, A.6
Livache, T.7
Seve, M.8
Favier, A.9
Douki, T.10
Gasparutto, D.11
Sauvaigo, S.12
Breton, J.13
-
16
-
-
0028134964
-
Isolation of nuclear extracts from fragile cells: A simplified procedure applied to thymocytes
-
M.I. Olnes, and R.N. Kurl Isolation of nuclear extracts from fragile cells: a simplified procedure applied to thymocytes Biotechniques 17 1994 828 829
-
(1994)
Biotechniques
, vol.17
, pp. 828-829
-
-
Olnes, M.I.1
Kurl, R.N.2
-
17
-
-
84881526576
-
Proteomic characterization of Pseudomonas aeruginosa PAO1 inner membrane
-
M.G. Casabona, Y. Vandenbrouck, I. Attree, and Y. Coute Proteomic characterization of Pseudomonas aeruginosa PAO1 inner membrane Proteomics 13 2013 2419 2423
-
(2013)
Proteomics
, vol.13
, pp. 2419-2423
-
-
Casabona, M.G.1
Vandenbrouck, Y.2
Attree, I.3
Coute, Y.4
-
18
-
-
67650770057
-
A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa
-
V. Dupierris, C. Masselon, M. Court, S. Kieffer-Jaquinod, and C. Bruley A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa Bioinformatics 25 2009 1980 1981
-
(2009)
Bioinformatics
, vol.25
, pp. 1980-1981
-
-
Dupierris, V.1
Masselon, C.2
Court, M.3
Kieffer-Jaquinod, S.4
Bruley, C.5
-
19
-
-
8744229966
-
MeCP2 behaves as an elongated monomer that does not stably associate with the Sin3a chromatin remodeling complex
-
R.J. Klose, and A.P. Bird MeCP2 behaves as an elongated monomer that does not stably associate with the Sin3a chromatin remodeling complex J. Biol. Chem. 279 2004 46490 46496
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 46490-46496
-
-
Klose, R.J.1
Bird, A.P.2
-
20
-
-
67650555463
-
ZBTB2, a novel master regulator of the p53 pathway
-
B.N. Jeon, W.I. Choi, M.Y. Yu, A.R. Yoon, M.H. Kim, C.O. Yun, and M.W. Hur ZBTB2, a novel master regulator of the p53 pathway J. Biol. Chem. 284 2009 17935 17946
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 17935-17946
-
-
Jeon, B.N.1
Choi, W.I.2
Yu, M.Y.3
Yoon, A.R.4
Kim, M.H.5
Yun, C.O.6
Hur, M.W.7
-
21
-
-
84864463122
-
Low values of 5-hydroxymethylcytosine (5hmC), the "sixth base", are associated with anaplasia in human brain tumors
-
T.F. Kraus, D. Globisch, M. Wagner, S. Eigenbrod, D. Widmann, M. Munzel, M. Muller, T. Pfaffeneder, B. Hackner, W. Feiden, U. Schuller, T. Carell, and H.A. Kretzschmar Low values of 5-hydroxymethylcytosine (5hmC), the "sixth base", are associated with anaplasia in human brain tumors Int. J. Cancer 131 2012 1577 1590
-
(2012)
Int. J. Cancer
, vol.131
, pp. 1577-1590
-
-
Kraus, T.F.1
Globisch, D.2
Wagner, M.3
Eigenbrod, S.4
Widmann, D.5
Munzel, M.6
Muller, M.7
Pfaffeneder, T.8
Hackner, B.9
Feiden, W.10
Schuller, U.11
Carell, T.12
Kretzschmar, H.A.13
-
22
-
-
59949099230
-
A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements
-
G. Mittler, F. Butter, and M. Mann A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements Genome Res. 19 2009 284 293
-
(2009)
Genome Res.
, vol.19
, pp. 284-293
-
-
Mittler, G.1
Butter, F.2
Mann, M.3
-
23
-
-
80053443628
-
A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein
-
S.J. Bartels, C.G. Spruijt, A.B. Brinkman, P.W. Jansen, M. Vermeulen, and H.G. Stunnenberg A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein PLoS One 6 2011 e25884
-
(2011)
PLoS One
, vol.6
, pp. 25884
-
-
Bartels, S.J.1
Spruijt, C.G.2
Brinkman, A.B.3
Jansen, P.W.4
Vermeulen, M.5
Stunnenberg, H.G.6
-
24
-
-
84874771985
-
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives
-
C.G. Spruijt, F. Gnerlich, A.H. Smits, T. Pfaffeneder, P.W. Jansen, C. Bauer, M. Munzel, M. Wagner, M. Muller, F. Khan, H.C. Eberl, A. Mensinga, A.B. Brinkman, K. Lephikov, U. Muller, J. Walter, R. Boelens, H. van Ingen, H. Leonhardt, T. Carell, and M. Vermeulen Dynamic readers for 5-(hydroxy) methylcytosine and its oxidized derivatives Cell 152 2013 1146 1159
-
(2013)
Cell
, vol.152
, pp. 1146-1159
-
-
Spruijt, C.G.1
Gnerlich, F.2
Smits, A.H.3
Pfaffeneder, T.4
Jansen, P.W.5
Bauer, C.6
Munzel, M.7
Wagner, M.8
Muller, M.9
Khan, F.10
Eberl, H.C.11
Mensinga, A.12
Brinkman, A.B.13
Lephikov, K.14
Muller, U.15
Walter, J.16
Boelens, R.17
Van Ingen, H.18
Leonhardt, H.19
Carell, T.20
Vermeulen, M.21
more..
-
25
-
-
77954370415
-
Development of a DNA photoaffinity probe for the analysis of 8-OxodG-binding proteins in a human proteome
-
M. Winnacker, V. Welzmiller, R. Strasser, and T. Carell Development of a DNA photoaffinity probe for the analysis of 8-OxodG-binding proteins in a human proteome ChemBioChem 11 2010 1345 1349
-
(2010)
ChemBioChem
, vol.11
, pp. 1345-1349
-
-
Winnacker, M.1
Welzmiller, V.2
Strasser, R.3
Carell, T.4
-
26
-
-
84876802244
-
Tools and strategies for DNA damage interactome analysis
-
C.B. du Puch, E. Barbier, S. Sauvaigo, D. Gasparutto, and J. Breton Tools and strategies for DNA damage interactome analysis Mutat. Res. 752 2013 72 83
-
(2013)
Mutat. Res.
, vol.752
, pp. 72-83
-
-
Du Puch, C.B.1
Barbier, E.2
Sauvaigo, S.3
Gasparutto, D.4
Breton, J.5
-
27
-
-
0032871399
-
MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex
-
H.H. Ng, Y. Zhang, B. Hendrich, C.A. Johnson, B.M. Turner, H. Erdjument-Bromage, P. Tempst, D. Reinberg, and A. Bird MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex Nat. Genet. 23 1999 58 61
-
(1999)
Nat. Genet.
, vol.23
, pp. 58-61
-
-
Ng, H.H.1
Zhang, Y.2
Hendrich, B.3
Johnson, C.A.4
Turner, B.M.5
Erdjument-Bromage, H.6
Tempst, P.7
Reinberg, D.8
Bird, A.9
-
28
-
-
84860221291
-
Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation
-
H. Hashimoto, Y. Liu, A.K. Upadhyay, Y. Chang, S.B. Howerton, P.M. Vertino, X. Zhang, and X. Cheng Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation Nucleic Acids Res. 40 2012 4841 4849
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4841-4849
-
-
Hashimoto, H.1
Liu, Y.2
Upadhyay, A.K.3
Chang, Y.4
Howerton, S.B.5
Vertino, P.M.6
Zhang, X.7
Cheng, X.8
-
29
-
-
84871563384
-
MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system
-
M. Mellen, P. Ayata, S. Dewell, S. Kriaucionis, and N. Heintz MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system Cell 151 2012 1417 1430
-
(2012)
Cell
, vol.151
, pp. 1417-1430
-
-
Mellen, M.1
Ayata, P.2
Dewell, S.3
Kriaucionis, S.4
Heintz, N.5
-
30
-
-
0035394961
-
The p120 catenin partner Kaiso is a DNA methylation-dependent transcriptional repressor
-
A. Prokhortchouk, B. Hendrich, H. Jorgensen, A. Ruzov, M. Wilm, G. Georgiev, A. Bird, and E. Prokhortchouk The p120 catenin partner Kaiso is a DNA methylation-dependent transcriptional repressor Genes Dev. 15 2001 1613 1618
-
(2001)
Genes Dev.
, vol.15
, pp. 1613-1618
-
-
Prokhortchouk, A.1
Hendrich, B.2
Jorgensen, H.3
Ruzov, A.4
Wilm, M.5
Georgiev, G.6
Bird, A.7
Prokhortchouk, E.8
-
31
-
-
33645218438
-
A family of human zinc finger proteins that bind methylated DNA and repress transcription
-
G.J. Filion, S. Zhenilo, S. Salozhin, D. Yamada, E. Prokhortchouk, and P.A. Defossez A family of human zinc finger proteins that bind methylated DNA and repress transcription Mol. Cell. Biol. 26 2006 169 181
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 169-181
-
-
Filion, G.J.1
Zhenilo, S.2
Salozhin, S.3
Yamada, D.4
Prokhortchouk, E.5
Defossez, P.A.6
-
32
-
-
84868106545
-
MicroRNA-149 inhibits proliferation and cell cycle progression through the targeting of ZBTB2 in human gastric cancer
-
Y. Wang, X. Zheng, Z. Zhang, J. Zhou, G. Zhao, J. Yang, L. Xia, R. Wang, X. Cai, H. Hu, C. Zhu, Y. Nie, K. Wu, D. Zhang, and D. Fan MicroRNA-149 inhibits proliferation and cell cycle progression through the targeting of ZBTB2 in human gastric cancer PLoS One 7 2012 e41693
-
(2012)
PLoS One
, vol.7
, pp. 41693
-
-
Wang, Y.1
Zheng, X.2
Zhang, Z.3
Zhou, J.4
Zhao, G.5
Yang, J.6
Xia, L.7
Wang, R.8
Cai, X.9
Hu, H.10
Zhu, C.11
Nie, Y.12
Wu, K.13
Zhang, D.14
Fan, D.15
-
33
-
-
79959531969
-
A genome-wide association study identifies novel loci associated with susceptibility to chronic myeloid leukemia
-
D.H. Kim, S.T. Lee, H.H. Won, S. Kim, M.J. Kim, H.J. Kim, S.H. Kim, J.W. Kim, Y.K. Kim, S.K. Sohn, J.H. Moon, C.W. Jung, and J.H. Lipton A genome-wide association study identifies novel loci associated with susceptibility to chronic myeloid leukemia Blood 117 2011 6906 6911
-
(2011)
Blood
, vol.117
, pp. 6906-6911
-
-
Kim, D.H.1
Lee, S.T.2
Won, H.H.3
Kim, S.4
Kim, M.J.5
Kim, H.J.6
Kim, S.H.7
Kim, J.W.8
Kim, Y.K.9
Sohn, S.K.10
Moon, J.H.11
Jung, C.W.12
Lipton, J.H.13
-
34
-
-
84877620952
-
Targeted inhibition of mutant IDH2 in leukemia cells induces cellular differentiation
-
F. Wang, J. Travins, B. DeLaBarre, V. Penard-Lacronique, S. Schalm, E. Hansen, K. Straley, A. Kernytsky, W. Liu, C. Gliser, H. Yang, S. Gross, E. Artin, V. Saada, E. Mylonas, C. Quivoron, J. Popovici-Muller, J.O. Saunders, F.G. Salituro, S. Yan, S. Murray, W. Wei, Y. Gao, L. Dang, M. Dorsch, S. Agresta, D.P. Schenkein, S.A. Biller, S.M. Su, S. de Botton, and K.E. Yen Targeted inhibition of mutant IDH2 in leukemia cells induces cellular differentiation Science 340 2013 622 626
-
(2013)
Science
, vol.340
, pp. 622-626
-
-
Wang, F.1
Travins, J.2
Delabarre, B.3
Penard-Lacronique, V.4
Schalm, S.5
Hansen, E.6
Straley, K.7
Kernytsky, A.8
Liu, W.9
Gliser, C.10
Yang, H.11
Gross, S.12
Artin, E.13
Saada, V.14
Mylonas, E.15
Quivoron, C.16
Popovici-Muller, J.17
Saunders, J.O.18
Salituro, F.G.19
Yan, S.20
Murray, S.21
Wei, W.22
Gao, Y.23
Dang, L.24
Dorsch, M.25
Agresta, S.26
Schenkein, D.P.27
Biller, S.A.28
Su, S.M.29
De Botton, S.30
Yen, K.E.31
more..
|