-
1
-
-
80055073166
-
Modelling reveals kinetic advantages of co-transcriptional splicing
-
Aitken, S., Alexander, R.D. and Beggs, J.D. (2011) Modelling reveals kinetic advantages of co-transcriptional splicing. PLoS Comput. Biol. 7, e1002215
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Aitken, S.1
Alexander, R.D.2
Beggs, J.D.3
-
2
-
-
36749045172
-
The molecular architecture of the nuclear pore complex
-
Alber, F., Dokudovskaya, S., Veenhoff, L.M., Zhang, W., Kipper, J., Devos, D., Suprapto, A., Karni-Schmidt, O., Williams, R., Chait, B.T., Sali, A. and Rout, M.P. (2007) The molecular architecture of the nuclear pore complex. Nature 450, 695-701
-
(2007)
Nature
, vol.450
, pp. 695-701
-
-
Alber, F.1
Dokudovskaya, S.2
Veenhoff, L.M.3
Zhang, W.4
Kipper, J.5
Devos, D.6
Suprapto, A.7
Karni-Schmidt, O.8
Williams, R.9
Chait, B.T.10
Sali, A.11
Rout, M.P.12
-
3
-
-
84859245835
-
A quantitative, high-throughput reverse genetic screen reveals novel connections between pre-mRNA splicing and 5' and 3' end transcript determinants
-
Albulescu, L.O., Sabet, N., Gudipati, M., Stepankiw, N., Bergman, Z.J., Huffaker, T.C. and Pleiss, J.A. (2012) A quantitative, high-throughput reverse genetic screen reveals novel connections between pre-mRNA splicing and 5' and 3' end transcript determinants. PLoS Genet. 8, e1002530
-
(2012)
PLoS Genet.
, vol.8
-
-
Albulescu, L.O.1
Sabet, N.2
Gudipati, M.3
Stepankiw, N.4
Bergman, Z.J.5
Huffaker, T.C.6
Pleiss, J.A.7
-
4
-
-
0032876602
-
A handful of intron-containing genes produces the lion's share of yeast mRNA
-
Ares, M., Jr., Grate, L. and Pauling, M.H. (1999) A handful of intron-containing genes produces the lion's share of yeast mRNA. RNA 5, 1138-1139
-
(1999)
RNA
, vol.5
, pp. 1138-1139
-
-
Ares Jr., M.1
Grate, L.2
Pauling, M.H.3
-
5
-
-
84860481614
-
Ubiquitin and assembly of export competent mRNP
-
Babour, A., Dargemont, C. and Stutz, F. (2012) Ubiquitin and assembly of export competent mRNP. Biochim. Biophys. Acta 1819, 521-530
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 521-530
-
-
Babour, A.1
Dargemont, C.2
Stutz, F.3
-
6
-
-
79960456464
-
Diverse environmental stresses elicit distinct responses at the level of pre-mRNA processing in yeast
-
Bergkessel, M., Whitworth, G.B. and Guthrie, C. (2011) Diverse environmental stresses elicit distinct responses at the level of pre-mRNA processing in yeast. RNA 17, 1461-1478
-
(2011)
RNA
, vol.17
, pp. 1461-1478
-
-
Bergkessel, M.1
Whitworth, G.B.2
Guthrie, C.3
-
7
-
-
84882895575
-
From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II
-
Braberg, H., Jin, H., Moehle, E.A., Chan, Y.A., Wang, S., Shales, M., Benschop, J.J., Morris, J.H., Qiu, C., Hu, F., Tang, L.K., Fraser, J.S., Holstege, F.C., Hieter, P., Guthrie, C., Kaplan, C.D. and Krogan, N.J. (2013) From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II. Cell 154, 775-788
-
(2013)
Cell
, vol.154
, pp. 775-788
-
-
Braberg, H.1
Jin, H.2
Moehle, E.A.3
Chan, Y.A.4
Wang, S.5
Shales, M.6
Benschop, J.J.7
Morris, J.H.8
Qiu, C.9
Hu, F.10
Tang, L.K.11
Fraser, J.S.12
Holstege, F.C.13
Hieter, P.14
Guthrie, C.15
Kaplan, C.D.16
Krogan, N.J.17
-
8
-
-
0036682364
-
Gene silencing: trans-histone regulatory pathway in chromatin
-
Briggs, S.D., Xiao, T., Sun, Z.W., Caldwell, J.A., Shabanowitz, J., Hunt, D.F., Allis, C.D. and Strahl, B.D. (2002) Gene silencing: trans-histone regulatory pathway in chromatin. Nature 418, 498
-
(2002)
Nature
, vol.418
, pp. 498
-
-
Briggs, S.D.1
Xiao, T.2
Sun, Z.W.3
Caldwell, J.A.4
Shabanowitz, J.5
Hunt, D.F.6
Allis, C.D.7
Strahl, B.D.8
-
9
-
-
79957834859
-
Pause locally, splice globally
-
Carrillo Oesterreich, F., Bieberstein, N. and Neugebauer, K.M. (2011) Pause locally, splice globally. Trends Cell Biol. 21, 328-335
-
(2011)
Trends Cell Biol.
, vol.21
, pp. 328-335
-
-
Carrillo Oesterreich, F.1
Bieberstein, N.2
Neugebauer, K.M.3
-
10
-
-
78649289872
-
Global analysis of nascent RNA reveals transcriptional pausing in terminal exons
-
Carrillo Oesterreich, F., Preibisch, S. and Neugebauer, K.M. (2010) Global analysis of nascent RNA reveals transcriptional pausing in terminal exons. Mol. Cell 40, 571-581
-
(2010)
Mol. Cell
, vol.40
, pp. 571-581
-
-
Carrillo Oesterreich, F.1
Preibisch, S.2
Neugebauer, K.M.3
-
11
-
-
70349731733
-
Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability
-
Chandrasekharan, M.B., Huang, F. and Sun, Z.W. (2009) Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability. Proc. Natl. Acad. Sci. U.S.A. 106, 16686-16691
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 16686-16691
-
-
Chandrasekharan, M.B.1
Huang, F.2
Sun, Z.W.3
-
12
-
-
0037012922
-
Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays
-
Clark, T.A., Sugnet, C.W. and Ares, M., Jr. (2002) Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays. Science 296, 907-910
-
(2002)
Science
, vol.296
, pp. 907-910
-
-
Clark, T.A.1
Sugnet, C.W.2
Ares Jr, M.3
-
13
-
-
0029775561
-
The yeast splicing factor Mud13p is a commitment complex component and corresponds to CBP20, the small subunit of the nuclear cap-binding complex
-
Colot, H.V., Stutz, F. and Rosbash, M. (1996) The yeast splicing factor Mud13p is a commitment complex component and corresponds to CBP20, the small subunit of the nuclear cap-binding complex. Genes Dev. 10, 1699-1708
-
(1996)
Genes Dev.
, vol.10
, pp. 1699-1708
-
-
Colot, H.V.1
Stutz, F.2
Rosbash, M.3
-
14
-
-
53749085710
-
Unphosphorylated SR-like protein Npl3 stimulates RNA polymerase II elongation
-
Dermody, J.L., Dreyfuss, J.M., Villen, J., Ogundipe, B., Gygi, S.P., Park, P.J., Ponticelli, A.S., Moore, C.L., Buratowski, S. and Bucheli, M.E. (2008) Unphosphorylated SR-like protein Npl3 stimulates RNA polymerase II elongation. PLoS One 3, e3273
-
(2008)
PLoS One
, vol.3
-
-
Dermody, J.L.1
Dreyfuss, J.M.2
Villen, J.3
Ogundipe, B.4
Gygi, S.P.5
Park, P.J.6
Ponticelli, A.S.7
Moore, C.L.8
Buratowski, S.9
Bucheli, M.E.10
-
15
-
-
77957878986
-
Complex exon-intron marking by histone modifications is not determined solely by nucleosome distribution
-
Dhami, P., Saffrey, P., Bruce, A.W., Dillon, S.C., Chiang, K., Bonhoure, N., Koch, C.M., Bye, J., James, K., Foad, N.S., Ellis, P., Watkins, N.A., Ouwehand, W.H., Langford, C., Andrews, R.M., Dunham, I. and Vetrie, D. (2010) Complex exon-intron marking by histone modifications is not determined solely by nucleosome distribution. PLoS One 5, e12339
-
(2010)
PLoS One
, vol.5
-
-
Dhami, P.1
Saffrey, P.2
Bruce, A.W.3
Dillon, S.C.4
Chiang, K.5
Bonhoure, N.6
Koch, C.M.7
Bye, J.8
James, K.9
Foad, N.S.10
Ellis, P.11
Watkins, N.A.12
Ouwehand, W.H.13
Langford, C.14
Andrews, R.M.15
Dunham, I.16
Vetrie, D.17
-
16
-
-
84872373404
-
Transcriptional elongation and alternative splicing
-
Dujardin, G., Lafaille, C., Petrillo, E., Buggiano, V., Gomez Acuna, L.I., Fiszbein, A., Godoy Herz, M.A., Nieto Moreno, N., Munoz, M.J., Allo, M., Schor, I.E. and Kornblihtt, A.R. (2013) Transcriptional elongation and alternative splicing. Biochim. Biophys. Acta 1829, 134-140
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 134-140
-
-
Dujardin, G.1
Lafaille, C.2
Petrillo, E.3
Buggiano, V.4
Gomez Acuna, L.I.5
Fiszbein, A.6
Godoy Herz, M.A.7
Nieto Moreno, N.8
Munoz, M.J.9
Allo, M.10
Schor, I.E.11
Kornblihtt, A.R.12
-
17
-
-
84856162864
-
Evaluation of normalization methods on GeLC-MS/MS label-free spectral counting data to correct for variation during proteomic workflows
-
Gokce, E., Shuford, C.M., Franck, W.L., Dean, R.A. and Muddiman, D.C. (2011) Evaluation of normalization methods on GeLC-MS/MS label-free spectral counting data to correct for variation during proteomic workflows. J. Am. Soc. Mass. Spectrom. 22, 2199-2208
-
(2011)
J. Am. Soc. Mass. Spectrom.
, vol.22
, pp. 2199-2208
-
-
Gokce, E.1
Shuford, C.M.2
Franck, W.L.3
Dean, R.A.4
Muddiman, D.C.5
-
18
-
-
21244493903
-
Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex
-
Gornemann, J., Kotovic, K.M., Hujer, K. and Neugebauer, K.M. (2005) Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex. Mol. Cell 19, 53-63
-
(2005)
Mol. Cell
, vol.19
, pp. 53-63
-
-
Gornemann, J.1
Kotovic, K.M.2
Hujer, K.3
Neugebauer, K.M.4
-
19
-
-
73349116881
-
Acetylation by the transcriptional coactivator Gcn5 plays a novel role in co-transcriptional spliceosome assembly
-
Gunderson, F.Q. and Johnson, T.L. (2009) Acetylation by the transcriptional coactivator Gcn5 plays a novel role in co-transcriptional spliceosome assembly. PLoS Genet. 5, e1000682
-
(2009)
PLoS Genet.
, vol.5
-
-
Gunderson, F.Q.1
Johnson, T.L.2
-
20
-
-
79952122633
-
Dynamic histone acetylation is critical for cotranscriptional spliceosome assembly and spliceosomal rearrangements
-
Gunderson, F.Q., Merkhofer, E.C. and Johnson, T.L. (2011) Dynamic histone acetylation is critical for cotranscriptional spliceosome assembly and spliceosomal rearrangements. Proc. Natl. Acad. Sci. U.S.A. 108, 2004-2009
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 2004-2009
-
-
Gunderson, F.Q.1
Merkhofer, E.C.2
Johnson, T.L.3
-
21
-
-
17144370940
-
The mRNA nuclear export factor Hpr1 is regulated by Rsp5-mediated ubiquitylation
-
Gwizdek, C., Hobeika, M., Kus, B., Ossareh-Nazari, B., Dargemont, C. and Rodriguez, M.S. (2005) The mRNA nuclear export factor Hpr1 is regulated by Rsp5-mediated ubiquitylation. J. Biol. Chem. 280, 13401-13405
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 13401-13405
-
-
Gwizdek, C.1
Hobeika, M.2
Kus, B.3
Ossareh-Nazari, B.4
Dargemont, C.5
Rodriguez, M.S.6
-
22
-
-
33750801564
-
Ubiquitin-associated domain of Mex67 synchronizes recruitment of the mRNA export machinery with transcription
-
Gwizdek, C., Iglesias, N., Rodriguez, M.S., Ossareh-Nazari, B., Hobeika, M., Divita, G., Stutz, F. and Dargemont, C. (2006) Ubiquitin-associated domain of Mex67 synchronizes recruitment of the mRNA export machinery with transcription. Proc. Natl. Acad. Sci. U.S.A. 103, 16376-16381
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 16376-16381
-
-
Gwizdek, C.1
Iglesias, N.2
Rodriguez, M.S.3
Ossareh-Nazari, B.4
Hobeika, M.5
Divita, G.6
Stutz, F.7
Dargemont, C.8
-
23
-
-
70449579978
-
Differential membrane proteome analysis reveals novel proteins involved in the degradation of aromatic compounds in Geobacter metallireducens
-
Heintz, D., Gallien, S., Wischgoll, S., Ullmann, A.K., Schaeffer, C., Kretzschmar, A.K., van Dorsselaer, A. and Boll, M. (2009) Differential membrane proteome analysis reveals novel proteins involved in the degradation of aromatic compounds in Geobacter metallireducens. Mol. Cell. Proteomics 8, 2159-2169
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2159-2169
-
-
Heintz, D.1
Gallien, S.2
Wischgoll, S.3
Ullmann, A.K.4
Schaeffer, C.5
Kretzschmar, A.K.6
van Dorsselaer, A.7
Boll, M.8
-
24
-
-
79960330571
-
Where splicing joins chromatin
-
Hnilicova, J. and Stanek, D. (2011) Where splicing joins chromatin. Nucleus 2, 182-188
-
(2011)
Nucleus
, vol.2
, pp. 182-188
-
-
Hnilicova, J.1
Stanek, D.2
-
25
-
-
84873816931
-
The yeast cap binding complex modulates transcription factor recruitment and establishes proper histone H3K36 trimethylation during active transcription
-
Hossain, M.A., Chung, C., Pradhan, S.K. and Johnson, T.L. (2013) The yeast cap binding complex modulates transcription factor recruitment and establishes proper histone H3K36 trimethylation during active transcription. Mol. Cell. Biol. 33, 785-799
-
(2013)
Mol. Cell. Biol.
, vol.33
, pp. 785-799
-
-
Hossain, M.A.1
Chung, C.2
Pradhan, S.K.3
Johnson, T.L.4
-
26
-
-
67651005681
-
The cap binding complex influences H2B ubiquitination by facilitating splicing of the SUS1 pre-mRNA
-
Hossain, M.A., Claggett, J.M., Nguyen, T. and Johnson, T.L. (2009) The cap binding complex influences H2B ubiquitination by facilitating splicing of the SUS1 pre-mRNA. RNA 15, 1515-1527
-
(2009)
RNA
, vol.15
, pp. 1515-1527
-
-
Hossain, M.A.1
Claggett, J.M.2
Nguyen, T.3
Johnson, T.L.4
-
27
-
-
0041305816
-
Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae
-
Howe, K.J., Kane, C.M. and Ares, M., Jr. (2003) Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae. RNA 9, 993-1006
-
(2003)
RNA
, vol.9
, pp. 993-1006
-
-
Howe, K.J.1
Kane, C.M.2
Ares Jr, M.3
-
28
-
-
78649836342
-
Reciprocal intronic and exonic histone modification regions in humans
-
Huff, J.T., Plocik, A.M., Guthrie, C. and Yamamoto, K.R. (2010) Reciprocal intronic and exonic histone modification regions in humans. Nat. Struct. Mol. Biol. 17, 1495-1499
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1495-1499
-
-
Huff, J.T.1
Plocik, A.M.2
Guthrie, C.3
Yamamoto, K.R.4
-
29
-
-
77956277960
-
Ubiquitin-mediated mRNP dynamics and surveillance prior to budding yeast mRNA export
-
Iglesias, N., Tutucci, E., Gwizdek, C., Vinciguerra, P., Von Dach, E., Corbett, A.H., Dargemont, C. and Stutz, F. (2010) Ubiquitin-mediated mRNP dynamics and surveillance prior to budding yeast mRNA export. Genes Dev. 24, 1927-1938
-
(2010)
Genes Dev.
, vol.24
, pp. 1927-1938
-
-
Iglesias, N.1
Tutucci, E.2
Gwizdek, C.3
Vinciguerra, P.4
Von Dach, E.5
Corbett, A.H.6
Dargemont, C.7
Stutz, F.8
-
30
-
-
84861843882
-
H2B monoubiquitylation is a 5'-enriched active transcription mark and correlates with exon-intron structure in human cells
-
Jung, I., Kim, S.K., Kim, M., Han, Y.M., Kim, Y.S., Kim, D. and Lee, D. (2012) H2B monoubiquitylation is a 5'-enriched active transcription mark and correlates with exon-intron structure in human cells. Genome Res. 22, 1026-1035
-
(2012)
Genome Res.
, vol.22
, pp. 1026-1035
-
-
Jung, I.1
Kim, S.K.2
Kim, M.3
Han, Y.M.4
Kim, Y.S.5
Kim, D.6
Lee, D.7
-
31
-
-
61349098460
-
Differential chromatin marking of introns and expressed exons by H3K36me3
-
Kolasinska-Zwierz, P., Down, T., Latorre, I., Liu, T., Liu, X.S. and Ahringer, J. (2009) Differential chromatin marking of introns and expressed exons by H3K36me3. Nat. Genet. 41, 376-381
-
(2009)
Nat. Genet.
, vol.41
, pp. 376-381
-
-
Kolasinska-Zwierz, P.1
Down, T.2
Latorre, I.3
Liu, T.4
Liu, X.S.5
Ahringer, J.6
-
32
-
-
0041630999
-
Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast
-
Kotovic, K.M., Lockshon, D., Boric, L. and Neugebauer, K.M. (2003) Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast. Mol. Cell. Biol. 23, 5768-5779
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 5768-5779
-
-
Kotovic, K.M.1
Lockshon, D.2
Boric, L.3
Neugebauer, K.M.4
-
33
-
-
56849100744
-
A single SR-like protein, Npl3, promotes pre-mRNA splicing in budding yeast
-
Kress, T.L., Krogan, N.J. and Guthrie, C. (2008) A single SR-like protein, Npl3, promotes pre-mRNA splicing in budding yeast. Mol. Cell 32, 727-734
-
(2008)
Mol. Cell
, vol.32
, pp. 727-734
-
-
Kress, T.L.1
Krogan, N.J.2
Guthrie, C.3
-
34
-
-
21244469725
-
Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast
-
Lacadie, S.A. and Rosbash, M. (2005) Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast. Mol. Cell 19, 65-75
-
(2005)
Mol. Cell
, vol.19
, pp. 65-75
-
-
Lacadie, S.A.1
Rosbash, M.2
-
35
-
-
79955949044
-
The specificity and topology of chromatin interaction pathways in yeast
-
Lenstra, T.L., Benschop, J.J., Kim, T., Schulze, J.M., Brabers, N.A., Margaritis, T., van de Pasch, L.A., van Heesch, S.A., Brok, M.O., Groot Koerkamp, M.J., Ko, C.W., van Leenen, D., Sameith, K., van Hooff, S.R., Lijnzaad, P., Kemmeren, P., Hentrich, T., Kobor, M.S., Buratowski, S. and Holstege, F.C. (2011) The specificity and topology of chromatin interaction pathways in yeast. Mol. Cell 42, 536-549
-
(2011)
Mol. Cell
, vol.42
, pp. 536-549
-
-
Lenstra, T.L.1
Benschop, J.J.2
Kim, T.3
Schulze, J.M.4
Brabers, N.A.5
Margaritis, T.6
van de Pasch, L.A.7
van Heesch, S.A.8
Brok, M.O.9
Groot Koerkamp, M.J.10
Ko, C.W.11
van Leenen, D.12
Sameith, K.13
van Hooff, S.R.14
Lijnzaad, P.15
Kemmeren, P.16
Hentrich, T.17
Kobor, M.S.18
Buratowski, S.19
Holstege, F.C.20
more..
-
36
-
-
0031820288
-
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
-
Longtine, M.S., McKenzie, A., 3rd, Demarini, D.J., Shah, N.G., Wach, A., Brachat, A., Philippsen, P. and Pringle, J.R. (1998) Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14, 953-961
-
(1998)
Yeast
, vol.14
, pp. 953-961
-
-
Longtine, M.S.1
McKenzie, A.2
Demarini, D.J.3
Shah, N.G.4
Wach, A.5
Brachat, A.6
Philippsen, P.7
Pringle, J.R.8
-
37
-
-
78650961149
-
Epigenetics in alternative pre-mRNA splicing
-
Luco, R.F., Allo, M., Schor, I.E., Kornblihtt, A.R. and Misteli, T. (2011) Epigenetics in alternative pre-mRNA splicing. Cell 144, 16-26
-
(2011)
Cell
, vol.144
, pp. 16-26
-
-
Luco, R.F.1
Allo, M.2
Schor, I.E.3
Kornblihtt, A.R.4
Misteli, T.5
-
38
-
-
77149175671
-
Regulation of alternative splicing by histone modifications
-
Luco, R.F., Pan, Q., Tominaga, K., Blencowe, B.J., Pereira-Smith, O.M. and Misteli, T. (2010) Regulation of alternative splicing by histone modifications. Science 327, 996-1000
-
(2010)
Science
, vol.327
, pp. 996-1000
-
-
Luco, R.F.1
Pan, Q.2
Tominaga, K.3
Blencowe, B.J.4
Pereira-Smith, O.M.5
Misteli, T.6
-
39
-
-
84866887452
-
Two distinct repressive mechanisms for histone 3 lysine 4 methylation through promoting 3'-end antisense transcription
-
Margaritis, T., Oreal, V., Brabers, N., Maestroni, L., Vitaliano-Prunier, A., Benschop, J.J., van Hooff, S., van Leenen, D., Dargemont, C., Geli, V. and Holstege, F.C. (2012) Two distinct repressive mechanisms for histone 3 lysine 4 methylation through promoting 3'-end antisense transcription. PLoS Genet. 8, e1002952
-
(2012)
PLoS Genet.
, vol.8
-
-
Margaritis, T.1
Oreal, V.2
Brabers, N.3
Maestroni, L.4
Vitaliano-Prunier, A.5
Benschop, J.J.6
van Hooff, S.7
van Leenen, D.8
Dargemont, C.9
Geli, V.10
Holstege, F.C.11
-
40
-
-
33845902802
-
Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment
-
Merz, C., Urlaub, H., Will, C.L. and Luhrmann, R. (2007) Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment. RNA 13, 116-128
-
(2007)
RNA
, vol.13
, pp. 116-128
-
-
Merz, C.1
Urlaub, H.2
Will, C.L.3
Luhrmann, R.4
-
41
-
-
84881481988
-
Cell-surface expression of the TLR homolog CD180 in circulating cells from splenic and nodal marginal zone lymphomas
-
Miguet, L., Lennon, S., Baseggio, L., Traverse-Glehen, A., Berger, F., Perrusson, N., Chenard, M.P., Galoisy, A.C., Eischen, A., Mayeur-Rousse, C., Maar, A., Fornecker, L., Herbrecht, R., Felman, P., Van Dorsselaer, A., Carapito, C., Cianferani, S. and Mauvieux, L. (2013) Cell-surface expression of the TLR homolog CD180 in circulating cells from splenic and nodal marginal zone lymphomas. Leukemia 27, 1748-1750
-
(2013)
Leukemia
, vol.27
, pp. 1748-1750
-
-
Miguet, L.1
Lennon, S.2
Baseggio, L.3
Traverse-Glehen, A.4
Berger, F.5
Perrusson, N.6
Chenard, M.P.7
Galoisy, A.C.8
Eischen, A.9
Mayeur-Rousse, C.10
Maar, A.11
Fornecker, L.12
Herbrecht, R.13
Felman, P.14
Van Dorsselaer, A.15
Carapito, C.16
Cianferani, S.17
Mauvieux, L.18
-
42
-
-
84870669546
-
The yeast SR-like protein Npl3 links chromatin modification to mRNA processing
-
Moehle, E.A., Ryan, C.J., Krogan, N.J., Kress, T.L. and Guthrie, C. (2012) The yeast SR-like protein Npl3 links chromatin modification to mRNA processing. PLoS Genet. 8, e1003101
-
(2012)
PLoS Genet.
, vol.8
-
-
Moehle, E.A.1
Ryan, C.J.2
Krogan, N.J.3
Kress, T.L.4
Guthrie, C.5
-
43
-
-
33845654265
-
Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing
-
Moore, M.J., Schwartzfarb, E.M., Silver, P.A. and Yu, M.C. (2006) Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing. Mol. Cell 24, 903-915
-
(2006)
Mol. Cell
, vol.24
, pp. 903-915
-
-
Moore, M.J.1
Schwartzfarb, E.M.2
Silver, P.A.3
Yu, M.C.4
-
44
-
-
78649838411
-
Integration of a splicing regulatory network within the meiotic gene expression program of Saccharomyces cerevisiae
-
Munding, E.M., Igel, A.H., Shiue, L., Dorighi, K.M., Trevino, L.R. and Ares, M., Jr. (2010) Integration of a splicing regulatory network within the meiotic gene expression program of Saccharomyces cerevisiae. Genes Dev. 24, 2693-2704
-
(2010)
Genes Dev.
, vol.24
, pp. 2693-2704
-
-
Munding, E.M.1
Igel, A.H.2
Shiue, L.3
Dorighi, K.M.4
Trevino, L.R.5
Ares Jr, M.6
-
45
-
-
0037144393
-
Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79
-
Ng, H.H., Xu, R.M., Zhang, Y. and Struhl, K. (2002) Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79. J. Biol. Chem. 277, 34655-34657
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 34655-34657
-
-
Ng, H.H.1
Xu, R.M.2
Zhang, Y.3
Struhl, K.4
-
46
-
-
84889068112
-
mRNA nuclear export in yeast
-
Nino, C.A., Herissant, L., Babour, A. and Dargemont, C. (2013) mRNA nuclear export in yeast. Chem. Rev. 113, 8523-8545
-
(2013)
Chem. Rev.
, vol.113
, pp. 8523-8545
-
-
Nino, C.A.1
Herissant, L.2
Babour, A.3
Dargemont, C.4
-
47
-
-
35348971338
-
Comprehensive analysis of diverse ribonucleoprotein complexes
-
Oeffinger, M., Wei, K.E., Rogers, R., DeGrasse, J.A., Chait, B.T., Aitchison, J.D. and Rout, M.P. (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat. Methods 4, 951-956
-
(2007)
Nat. Methods
, vol.4
, pp. 951-956
-
-
Oeffinger, M.1
Wei, K.E.2
Rogers, R.3
DeGrasse, J.A.4
Chait, B.T.5
Aitchison, J.D.6
Rout, M.P.7
-
48
-
-
77954212973
-
Cdc48 and Ufd3, new partners of the ubiquitin protease Ubp3, are required for ribophagy
-
Ossareh-Nazari, B., Bonizec, M., Cohen, M., Dokudovskaya, S., Delalande, F., Schaeffer, C., Van Dorsselaer, A. and Dargemont, C. (2010) Cdc48 and Ufd3, new partners of the ubiquitin protease Ubp3, are required for ribophagy. EMBO Rep. 11, 548-554
-
(2010)
EMBO Rep.
, vol.11
, pp. 548-554
-
-
Ossareh-Nazari, B.1
Bonizec, M.2
Cohen, M.3
Dokudovskaya, S.4
Delalande, F.5
Schaeffer, C.6
Van Dorsselaer, A.7
Dargemont, C.8
-
49
-
-
84880650073
-
The nuclear cap-binding complex interacts with the U4/U6.U5 tri-snRNP and promotes spliceosome assembly in mammalian cells
-
Pabis, M., Neufeld, N., Steiner, M.C., Bojic, T., Shav-Tal, Y. and Neugebauer, K.M. (2013) The nuclear cap-binding complex interacts with the U4/U6.U5 tri-snRNP and promotes spliceosome assembly in mammalian cells. RNA 19, 1054-1063
-
(2013)
RNA
, vol.19
, pp. 1054-1063
-
-
Pabis, M.1
Neufeld, N.2
Steiner, M.C.3
Bojic, T.4
Shav-Tal, Y.5
Neugebauer, K.M.6
-
50
-
-
34748855702
-
Rapid, transcript-specific changes in splicing in response to environmental stress
-
Pleiss, J.A., Whitworth, G.B., Bergkessel, M. and Guthrie, C. (2007) Rapid, transcript-specific changes in splicing in response to environmental stress. Mol. Cell 27, 928-937
-
(2007)
Mol. Cell
, vol.27
, pp. 928-937
-
-
Pleiss, J.A.1
Whitworth, G.B.2
Bergkessel, M.3
Guthrie, C.4
-
51
-
-
0034695456
-
Rad6-dependent ubiquitination of histone H2B in yeast
-
Robzyk, K., Recht, J. and Osley, M.A. (2000) Rad6-dependent ubiquitination of histone H2B in yeast. Science 287, 501-504
-
(2000)
Science
, vol.287
, pp. 501-504
-
-
Robzyk, K.1
Recht, J.2
Osley, M.A.3
-
52
-
-
9444225935
-
Java Treeview-extensible visualization of microarray data
-
Saldanha, A.J. (2004) Java Treeview-extensible visualization of microarray data. Bioinformatics 20, 3246-3248
-
(2004)
Bioinformatics
, vol.20
, pp. 3246-3248
-
-
Saldanha, A.J.1
-
53
-
-
69949132191
-
Chromatin organization marks exon-intron structure
-
Schwartz, S., Meshorer, E. and Ast, G. (2009) Chromatin organization marks exon-intron structure. Nat. Struct. Mol. Biol. 16, 990-995
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 990-995
-
-
Schwartz, S.1
Meshorer, E.2
Ast, G.3
-
54
-
-
84055185199
-
H2B ubiquitylation is part of chromatin architecture that marks exon-intron structure in budding yeast
-
Shieh, G.S., Pan, C.H., Wu, J.H., Sun, Y.J., Wang, C.C., Hsiao, W.C., Lin, C.Y., Tung, L., Chang, T.H., Fleming, A.B., Hillyer, C., Lo, Y.C., Berger, S.L., Osley, M.A. and Kao, C.F. (2011) H2B ubiquitylation is part of chromatin architecture that marks exon-intron structure in budding yeast. BMC Genomics 12, 627
-
(2011)
BMC Genomics
, vol.12
, pp. 627
-
-
Shieh, G.S.1
Pan, C.H.2
Wu, J.H.3
Sun, Y.J.4
Wang, C.C.5
Hsiao, W.C.6
Lin, C.Y.7
Tung, L.8
Chang, T.H.9
Fleming, A.B.10
Hillyer, C.11
Lo, Y.C.12
Berger, S.L.13
Osley, M.A.14
Kao, C.F.15
-
55
-
-
0030462232
-
The essential yeast RNA binding protein Np13p is methylated
-
Siebel, C.W. and Guthrie, C. (1996) The essential yeast RNA binding protein Np13p is methylated. Proc. Natl. Acad. Sci. U.S.A. 93, 13641-13646
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 13641-13646
-
-
Siebel, C.W.1
Guthrie, C.2
-
56
-
-
36249027156
-
Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
-
Sims, R.J., 3rd, Millhouse, S., Chen, C.F., Lewis, B.A., Erdjument-Bromage, H., Tempst, P., Manley, J.L. and Reinberg, D. (2007) Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol. Cell 28, 665-676
-
(2007)
Mol. Cell
, vol.28
, pp. 665-676
-
-
Sims, R.J.1
Millhouse, S.2
Chen, C.F.3
Lewis, B.A.4
Erdjument-Bromage, H.5
Tempst, P.6
Manley, J.L.7
Reinberg, D.8
-
57
-
-
70350013550
-
Biased chromatin signatures around polyadenylation sites and exons
-
Spies, N., Nielsen, C.B., Padgett, R.A. and Burge, C.B. (2009) Biased chromatin signatures around polyadenylation sites and exons. Mol. Cell 36, 245-254
-
(2009)
Mol. Cell
, vol.36
, pp. 245-254
-
-
Spies, N.1
Nielsen, C.B.2
Padgett, R.A.3
Burge, C.B.4
-
58
-
-
0033034668
-
Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae
-
Spingola, M., Grate, L., Haussler, D. and Ares, M., Jr. (1999) Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae. RNA 5, 221-234
-
(1999)
RNA
, vol.5
, pp. 221-234
-
-
Spingola, M.1
Grate, L.2
Haussler, D.3
Ares Jr, M.4
-
59
-
-
79959484677
-
Signals and combinatorial functions of histone modifications
-
Suganuma, T. and Workman, J.L. (2011) Signals and combinatorial functions of histone modifications. Annu. Rev. Biochem. 80, 473-499
-
(2011)
Annu. Rev. Biochem.
, vol.80
, pp. 473-499
-
-
Suganuma, T.1
Workman, J.L.2
-
60
-
-
0037019333
-
Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast
-
Sun, Z.W. and Allis, C.D. (2002) Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast. Nature 418, 104-108
-
(2002)
Nature
, vol.418
, pp. 104-108
-
-
Sun, Z.W.1
Allis, C.D.2
-
61
-
-
33845643952
-
A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional
-
Tardiff, D.F., Lacadie, S.A. and Rosbash, M. (2006) A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional. Mol. Cell 24, 917-929
-
(2006)
Mol. Cell
, vol.24
, pp. 917-929
-
-
Tardiff, D.F.1
Lacadie, S.A.2
Rosbash, M.3
-
62
-
-
84883377142
-
A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs
-
Tuck, A.C. and Tollervey, D. (2013) A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs. Cell 154, 996-1009
-
(2013)
Cell
, vol.154
, pp. 996-1009
-
-
Tuck, A.C.1
Tollervey, D.2
-
63
-
-
84855864819
-
H2B ubiquitylation controls the formation of export-competent mRNP
-
Vitaliano-Prunier, A., Babour, A., Herissant, L., Apponi, L., Margaritis, T., Holstege, F.C., Corbett, A.H., Gwizdek, C. and Dargemont, C. (2012) H2B ubiquitylation controls the formation of export-competent mRNP. Mol. Cell 45, 132-139
-
(2012)
Mol. Cell
, vol.45
, pp. 132-139
-
-
Vitaliano-Prunier, A.1
Babour, A.2
Herissant, L.3
Apponi, L.4
Margaritis, T.5
Holstege, F.C.6
Corbett, A.H.7
Gwizdek, C.8
Dargemont, C.9
-
64
-
-
55549101555
-
Ubiquitylation of the COMPASS component Swd2 links H2B ubiquitylation to H3K4 trimethylation
-
Vitaliano-Prunier, A., Menant, A., Hobeika, M., Geli, V., Gwizdek, C. and Dargemont, C. (2008) Ubiquitylation of the COMPASS component Swd2 links H2B ubiquitylation to H3K4 trimethylation. Nat. Cell Biol. 10, 1365-1371
-
(2008)
Nat. Cell Biol.
, vol.10
, pp. 1365-1371
-
-
Vitaliano-Prunier, A.1
Menant, A.2
Hobeika, M.3
Geli, V.4
Gwizdek, C.5
Dargemont, C.6
-
65
-
-
0037248944
-
Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter
-
Wood, A., Krogan, N.J., Dover, J., Schneider, J., Heidt, J., Boateng, M.A., Dean, K., Golshani, A., Zhang, Y., Greenblatt, J.F., Johnston, M. and Shilatifard, A. (2003) Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter. Mol. Cell 11, 267-274
-
(2003)
Mol. Cell
, vol.11
, pp. 267-274
-
-
Wood, A.1
Krogan, N.J.2
Dover, J.3
Schneider, J.4
Heidt, J.5
Boateng, M.A.6
Dean, K.7
Golshani, A.8
Zhang, Y.9
Greenblatt, J.F.10
Johnston, M.11
Shilatifard, A.12
-
66
-
-
84880424207
-
USP49 deubiquitinates histone H2B and regulates cotranscriptional pre-mRNA splicing
-
Zhang, Z., Jones, A., Joo, H.Y., Zhou, D., Cao, Y., Chen, S., Erdjument-Bromage, H., Renfrow, M., He, H., Tempst, P., Townes, T.M., Giles, K.E., Ma, L. and Wang, H. (2013) USP49 deubiquitinates histone H2B and regulates cotranscriptional pre-mRNA splicing. Genes Dev. 27, 1581-1595
-
(2013)
Genes Dev.
, vol.27
, pp. 1581-1595
-
-
Zhang, Z.1
Jones, A.2
Joo, H.Y.3
Zhou, D.4
Cao, Y.5
Chen, S.6
Erdjument-Bromage, H.7
Renfrow, M.8
He, H.9
Tempst, P.10
Townes, T.M.11
Giles, K.E.12
Ma, L.13
Wang, H.14
|