메뉴 건너뛰기




Volumn 9, Issue 1, 2014, Pages

DNA barcoding reveals limited accuracy of identifications based on folk taxonomy

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; DATA BASE; DNA BARCODING; ENDANGERED SPECIES; GENBANK; GENE SEQUENCE; GENETIC MARKER; MARKER GENE; MARKET; MEDICAL LITERATURE; MEDICINAL PLANT; MOROCCO; NONHUMAN; PLANT GENE; PLANT IDENTIFICATION; PLANT ROOT; PLANT STRUCTURES; PLANT TAXONOMY; SPECIES IDENTIFICATION;

EID: 84897419970     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0084291     Document Type: Article
Times cited : (45)

References (70)
  • 1
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes - Application to the identification of mycorrhizae and rusts
    • doi:10.1111/j.1365-294X.1993.tb00005.x
    • Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113-118. doi:10.1111/j.1365-294X.1993.tb00005.x.
    • (1993) Mol Ecol , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 2
    • 0026339443 scopus 로고
    • Molecular identification of hybrids between the two largest whale species, the blue whale (Balaenoptera musculus) and the fin whale (B. Physalus)
    • Arnason U, Spilliaert R, Pálsdóttir A, Arnason A (1991) Molecular identification of hybrids between the two largest whale species, the blue whale (Balaenoptera musculus) and the fin whale (B. physalus). Hereditas 115: 183-189.
    • (1991) Hereditas , vol.115 , pp. 183-189
    • Arnason, U.1    Spilliaert, R.2    Pálsdóttir, A.3    Arnason, A.4
  • 3
    • 77950299198 scopus 로고    scopus 로고
    • Polymorphic microsatellites for forensic identification of agarwood (Aquilaria crassna)
    • Eurlings MCM, Heuveling van Beek H, Gravendeel B (2010) Polymorphic microsatellites for forensic identification of agarwood (Aquilaria crassna). Forensic Sci Int 197: 30-34.
    • (2010) Forensic Sci Int , vol.197 , pp. 30-34
    • Eurlings, M.C.M.1    Heuveling Van Beek, H.2    Gravendeel, B.3
  • 4
    • 0000649946 scopus 로고    scopus 로고
    • Molecular identification of similar species of the genus Biomphalaria (Mollusca: Planorbidae) determined by a polymerase chain reaction-restriction fragment length polymorphism
    • Caldeira RL, Vidigal TH, Paulinelli ST, Simpson AJ, Carvalho OS (1998) Molecular identification of similar species of the genus Biomphalaria (Mollusca: Planorbidae) determined by a polymerase chain reaction-restriction fragment length polymorphism. Mem Inst Oswaldo Cruz 93 Suppl 1: 219-225.
    • (1998) Mem Inst Oswaldo Cruz , vol.93 , Issue.SUPPL. 1 , pp. 219-225
    • Caldeira, R.L.1    Vidigal, T.H.2    Paulinelli, S.T.3    Simpson, A.J.4    Carvalho, O.S.5
  • 5
    • 84862990988 scopus 로고    scopus 로고
    • Molecular identification of commercialized medicinal plants in Southern Morocco
    • doi:10.1371/journal.pone.0039459
    • Kool A, de Boer HJ, Krüger Å, Rydberg A, Abbad A, et al. (2012) Molecular identification of commercialized medicinal plants in Southern Morocco. PLoS ONE 7: e39459. doi:10.1371/journal.pone.0039459.
    • (2012) PLoS ONE , vol.7
    • Kool, A.1    De Boer, H.J.2    Krüger, Å.3    Rydberg, A.4    Abbad, A.5
  • 6
    • 0029848039 scopus 로고    scopus 로고
    • Unknown New Zealand angiosperm assigned to Cunoniaceae using sequence of the chloroplast rbcL gene
    • Garnock-Jones PJ, Timmerman GM, Wagstaff SJ (1996) Unknown New Zealand angiosperm assigned to Cunoniaceae using sequence of the chloroplast rbcL gene. Plant Syst Evol 202: 211-218. doi:10.1007/BF00983383. (Pubitemid 26381046)
    • (1996) Plant Systematics and Evolution , vol.202 , Issue.3-4 , pp. 211-218
    • Garnock-Jones, P.J.1    Timmerman, G.M.2    Wagstaff, S.J.3
  • 8
    • 34248149943 scopus 로고    scopus 로고
    • BOLD: The Barcode of Life Data System: Barcoding
    • DOI 10.1111/j.1471-8286.2007.01678.x
    • Ratnasingham S, Hebert PD (2007) BOLD: The Barcode of Life Data System (http://www.barcodinglife. org). Molecular ecology notes 7: 355-364. (Pubitemid 46714172)
    • (2007) Molecular Ecology Notes , vol.7 , Issue.3 , pp. 355-364
    • Ratnasingham, S.1    Hebert, P.D.N.2
  • 11
    • 38949205862 scopus 로고    scopus 로고
    • CO1 DNA barcoding amphibians: Take the chance, meet the challenge
    • DOI 10.1111/j.1471-8286.2007.01964.x
    • Smith MA, Poyarkov NA, Hebert PDN (2008) CO1 DNA barcoding amphibians: take the chance, meet the challenge. Mol Ecol Resources 8: 235-246. doi:10.1111/j.1471-8286.2007.01964.x. (Pubitemid 351224860)
    • (2008) Molecular Ecology Resources , vol.8 , Issue.2 , pp. 235-246
    • Smith, M.A.1    Poyarkov Jr., N.A.2    Hebert, P.D.N.3
  • 12
    • 65349124174 scopus 로고    scopus 로고
    • Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?
    • doi:10.1111/j.1755-0998.2009.02652.x
    • Fazekas AJ, Kesanakurti PR, Burgess KS, Percy DM, Graham SW, et al. (2009) Are plant species inherently harder to discriminate than animal species using DNA barcoding markers? Mol Ecol Resources 9: 130-139. doi:10.1111/j.1755- 0998.2009.02652.x.
    • (2009) Mol Ecol Resources , vol.9 , pp. 130-139
    • Fazekas, A.J.1    Kesanakurti, P.R.2    Burgess, K.S.3    Percy, D.M.4    Graham, S.W.5
  • 14
    • 83755173031 scopus 로고    scopus 로고
    • Refining the DNA barcode for land plants
    • doi:10.1073/pnas.1116812108
    • Hollingsworth PM (2011) Refining the DNA barcode for land plants. PNAS 108: 19451-19452. doi:10.1073/pnas.1116812108.
    • (2011) PNAS , vol.108 , pp. 19451-19452
    • Hollingsworth, P.M.1
  • 16
    • 77951631088 scopus 로고    scopus 로고
    • A two-locus global DNA barcode for land plants: The coding rbcL gene complements the non-coding trnH-psbA spacer region
    • doi:10.1371/journal.pone.0000508
    • Kress WJ, Erickson DL (2007) A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE 2: e508. doi:10.1371/journal.pone.0000508.
    • (2007) PLoS ONE , vol.2
    • Kress, W.J.1    Erickson, D.L.2
  • 18
    • 77649108109 scopus 로고    scopus 로고
    • Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species
    • doi:10.1371/journal.pone.0008613
    • Chen S, Yao H, Han J, Liu C, Song J, et al. (2010) Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS ONE 5: 1-8. doi:10.1371/journal.pone.0008613.
    • (2010) PLoS ONE , vol.5 , pp. 1-8
    • Chen, S.1    Yao, H.2    Han, J.3    Liu, C.4    Song, J.5
  • 20
    • 83755207349 scopus 로고    scopus 로고
    • Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants
    • Li DZ, Gao LM, Li HT, Wang H, Ge XJ, et al. (2011) Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. PNAS 108: 19641-19646.
    • (2011) PNAS , vol.108 , pp. 19641-19646
    • Li, D.Z.1    Gao, L.M.2    Li, H.T.3    Wang, H.4    Ge, X.J.5
  • 22
    • 84865464866 scopus 로고    scopus 로고
    • How to Open the treasure chest? Optimising DNA extraction from herbarium specimens
    • Särkinen T, Staats M, Richardson JE, Cowan RS, Bakker FT (2012) How to Open the treasure chest? Optimising DNA extraction from herbarium specimens. PloS one 7: e43808.
    • (2012) PloS One , vol.7
    • Särkinen, T.1    Staats, M.2    Richardson, J.E.3    Cowan, R.S.4    Bakker, F.T.5
  • 23
    • 84875952336 scopus 로고    scopus 로고
    • A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes
    • Available: Accessed 2 August 2013
    • Stull GW, Moore MJ, Mandala VS, Douglas NA, Kates H-R, et al. (2013) A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes. Applications in Plant Sciences 1. Available: http://www.bioone.org/doi/abs/10.3732/apps.1200497. Accessed 2 August 2013.
    • (2013) Applications in Plant Sciences , vol.1
    • Stull, G.W.1    Moore, M.J.2    Mandala, V.S.3    Douglas, N.A.4    Kates, H.-R.5
  • 24
    • 36249004900 scopus 로고    scopus 로고
    • Species concepts and species delimitation
    • doi:10.1080/10635150701701083
    • De Queiroz K (2007) Species concepts and species delimitation. Syst Biol 56: 879-886. doi:10.1080/10635150701701083.
    • (2007) Syst Biol , vol.56 , pp. 879-886
    • De Queiroz, K.1
  • 25
    • 67651052323 scopus 로고    scopus 로고
    • The role of hybridization in plant speciation
    • Soltis PS, Soltis DE (2009) The role of hybridization in plant speciation. Ann Rev Plant Biology 60: 561-588.
    • (2009) Ann Rev Plant Biology , vol.60 , pp. 561-588
    • Soltis, P.S.1    Soltis, D.E.2
  • 27
    • 42949114454 scopus 로고    scopus 로고
    • DNA barcoding the floras of biodiversity hotspots
    • doi:10.1073/pnas.0709936105
    • Lahaye R, Van Der Bank M, Bogarin D, Warner J, Pupulin F, et al. (2008) DNA barcoding the floras of biodiversity hotspots. PNAS 105: 2923-2928. doi:10.1073/pnas.0709936105.
    • (2008) PNAS , vol.105 , pp. 2923-2928
    • Lahaye, R.1    Van Der Bank, M.2    Bogarin, D.3    Warner, J.4    Pupulin, F.5
  • 28
    • 68449095065 scopus 로고    scopus 로고
    • Barcoding of plants and fungi
    • Chase MW, Fay MF (2009) Barcoding of plants and fungi. Science 325: 682.
    • (2009) Science , vol.325 , pp. 682
    • Chase, M.W.1    Fay, M.F.2
  • 33
    • 33749535839 scopus 로고    scopus 로고
    • DNA barcoding and taxonomy in Diptera: A tale of high intraspecific variability and low identification success
    • doi:10.1080/10635150600969864
    • Meier R, Shiyang K, Vaidya G, Ng PKL (2006) DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Syst Biol 55: 715-728. doi:10.1080/10635150600969864.
    • (2006) Syst Biol , vol.55 , pp. 715-728
    • Meier, R.1    Shiyang, K.2    Vaidya, G.3    Ng, P.K.L.4
  • 34
    • 24044437182 scopus 로고    scopus 로고
    • DNA-BAR: Distinguisher selection for DNA barcoding
    • DOI 10.1093/bioinformatics/bti547
    • DasGupta B, Konwar KM, Muandoiu II, Shvartsman AA (2005) DNA-BAR: distinguisher selection for DNA barcoding. Bioinformatics 21: 3424-3426. (Pubitemid 41222449)
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3424-3426
    • DasGupta, B.1    Konwar, K.M.2    Mandoiu, I.I.3    Shvartsman, A.A.4
  • 36
    • 37349085210 scopus 로고    scopus 로고
    • Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata
    • DOI 10.1098/rspb.2007.1290, PII M54062L638343K43
    • Rach J, DeSalle R, Sarkar IN, Schierwater B, Hadrys H (2008) Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata. Proceedings of the Royal Society B: Biological Sciences 275: 237-247. (Pubitemid 350295712)
    • (2008) Proceedings of the Royal Society B: Biological Sciences , vol.275 , Issue.1632 , pp. 237-247
    • Rach, J.1    DeSalle, R.2    Sarkar, I.N.3    Schierwater, B.4    Hadrys, H.5
  • 37
    • 84855854544 scopus 로고    scopus 로고
    • DNA barcoding of recently diverged species: Relative performance of matching methods
    • Van Velzen R, Weitschek E, Felici G, Bakker FT (2012) DNA barcoding of recently diverged species: relative performance of matching methods. PloS one 7: e30490.
    • (2012) PloS One , vol.7
    • Van Velzen, R.1    Weitschek, E.2    Felici, G.3    Bakker, F.T.4
  • 38
    • 77952098327 scopus 로고    scopus 로고
    • IUCN Centre for Mediterranean Cooperation MalagaSpain: IUCN CMC
    • IUCN Centre for Mediterranean Cooperation (2005) A guide to the medicinal plants of North Africa. MalagaSpain: IUCN CMC. 256 p.
    • (2005) A Guide to the Medicinal Plants of North Africa , pp. 256
  • 39
    • 84871720170 scopus 로고    scopus 로고
    • Species substitution in medicinal roots and possible implications for toxicity in Morocco
    • Ouarghidi A, Powell B, Martin GJ, de Boer HJ, Abbad A (2012) Species substitution in medicinal roots and possible implications for toxicity in Morocco. Econ Bot 66: 370-382.
    • (2012) Econ Bot , vol.66 , pp. 370-382
    • Ouarghidi, A.1    Powell, B.2    Martin, G.J.3    De Boer, H.J.4    Abbad, A.5
  • 41
    • 0037963963 scopus 로고    scopus 로고
    • Ethnobotanical studies and economic evaluation of medicinal plants in Taounate province (Northern Morocco)
    • DOI 10.1016/S0378-8741(03)00012-6
    • El-Hilaly J, Hmammouchi M, Lyoussi B (2003) Ethnobotanical studies and economic evaluation of medicinal plants in Taounate province (Northern Morocco). J Ethnopharm 86: 149-158. (Pubitemid 36542869)
    • (2003) Journal of Ethnopharmacology , vol.86 , Issue.2-3 , pp. 149-158
    • El-Hilaly, J.1    Hmammouchi, M.2    Lyoussi, B.3
  • 43
    • 0006517383 scopus 로고
    • African medicinal plants: Setting priorities at the interface between conservation and primary health care
    • Cunningham AB (1993) African medicinal plants: setting priorities at the interface between conservation and primary health care. People and Plants working paper 1: 1-50.
    • (1993) People and Plants Working Paper , vol.1 , pp. 1-50
    • Cunningham, A.B.1
  • 44
    • 73849092532 scopus 로고    scopus 로고
    • Development of a comprehensive detection method for medicinal and toxic plant species
    • doi:10.3732/ajb.93.4.566
    • Barthelson RA, Sundareshan P, Galbraith DW, Woosley RL (2006) Development of a comprehensive detection method for medicinal and toxic plant species. Am J Bot 93: 566-574. doi:10.3732/ajb.93.4.566.
    • (2006) Am J Bot , vol.93 , pp. 566-574
    • Barthelson, R.A.1    Sundareshan, P.2    Galbraith, D.W.3    Woosley, R.L.4
  • 45
    • 16644362875 scopus 로고    scopus 로고
    • Neurotoxicities in infants seen with the consumption of star anise tea
    • doi:10.1542/peds.2004-0058
    • Ize-Ludlow D, Ragone S, Bruck IS, Bernstein JN, Duchowny M, et al. (2004) Neurotoxicities in infants seen with the consumption of star anise tea. Pediatrics 114: e653. doi:10.1542/peds.2004-0058.
    • (2004) Pediatrics , vol.114
    • Ize-Ludlow, D.1    Ragone, S.2    Bruck, I.S.3    Bernstein, J.N.4    Duchowny, M.5
  • 47
    • 0003573653 scopus 로고
    • AlgonacMichigan: Reference Publications Inc.
    • Boulos L (1983) Medicinal plants of North Africa. AlgonacMichigan: Reference Publications Inc. 286 p.
    • (1983) Medicinal Plants of North Africa , pp. 286
    • Boulos, L.1
  • 49
    • 0023189781 scopus 로고
    • A study of four medicinal plant complexes of Mexico and adjacent United States
    • DOI 10.1016/0378-8741(87)90039-0
    • Linares E, Bye RA (1987) A study of four medicinal plant complexes of Mexico and adjacent United States. Journal of ethnopharmacology 19: 153-183. (Pubitemid 17083778)
    • (1987) Journal of Ethnopharmacology , vol.19 , Issue.2 , pp. 153-183
    • Linares, E.1    Bye Jr., R.A.2
  • 50
    • 0026055280 scopus 로고
    • Repertory of standard herbal drugs in the Moroccan pharmacopoea
    • Bellakhdar J, Claisse R, Fleurentin J, Younos C (1991) Repertory of standard herbal drugs in the Moroccan pharmacopoea. J Ethnopharm 35: 123-143.
    • (1991) J Ethnopharm , vol.35 , pp. 123-143
    • Bellakhdar, J.1    Claisse, R.2    Fleurentin, J.3    Younos, C.4
  • 53
    • 0002533225 scopus 로고    scopus 로고
    • Catalogue des plantes vasculaires rares, menacées ou endémiques du Maroc
    • Fennane M, Ibn Tattou M (1998) Catalogue des plantes vasculaires rares, menacées ou endémiques du Maroc. Bocconea 8: 1-243.
    • (1998) Bocconea , vol.8 , pp. 1-243
    • Fennane, M.1    Ibn Tattou, M.2
  • 58
    • 0003698136 scopus 로고
    • A revision of the genus Anacyclus L.(Compositae: Anthemideae)
    • Humphries CJ (1979) A revision of the genus Anacyclus L.(Compositae: Anthemideae). Bull Br Mus nat Hist, Bot 7: 83-142.
    • (1979) Bull Br Mus Nat Hist, Bot , vol.7 , pp. 83-142
    • Humphries, C.J.1
  • 59
    • 84857812938 scopus 로고    scopus 로고
    • DNA barcoding and microsatellites help species delimitation and hybrid identification in endangered galaxiid fishes
    • Vanhaecke D, de Leaniz CG, Gajardo G, Young K, Sanzana J, et al. (2012) DNA barcoding and microsatellites help species delimitation and hybrid identification in endangered galaxiid fishes. PloS one 7: e32939.
    • (2012) PloS One , vol.7
    • Vanhaecke, D.1    De Leaniz, C.G.2    Gajardo, G.3    Young, K.4    Sanzana, J.5
  • 62
    • 0001663903 scopus 로고
    • A method for rapid small-scale preparation of fungal DNA
    • Yoon CS, Glawe A, Shaw PD (1991) A method for rapid small-scale preparation of fungal DNA. Mycologia 83: 835-838.
    • (1991) Mycologia , vol.83 , pp. 835-838
    • Yoon, C.S.1    Glawe, A.2    Shaw, P.D.3
  • 63
    • 84873612966 scopus 로고    scopus 로고
    • Available: Accessed 1 January 2007
    • RBG-K (2007) Royal Botanic Gardens Kew, DNA Barcoding. Available: http://www.kew.org/barcoding/protocols.html. Accessed 1 January 2007.
    • (2007) Royal Botanic Gardens Kew, DNA Barcoding
  • 64
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis M, Gelfand D, Shinsky J, White T, editors. San Diego: Academic Press
    • White T, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M, Gelfand D, Shinsky J, White T, editors. PCR Protocols: A Guide to Methods and Applications. San Diego: Academic Press. pp. 315-322.
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 65
    • 0029125662 scopus 로고
    • Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: Implications for biogeography and concerted evolution
    • Sang T, Crawford DJ, Stuessy TF (1995) Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: implications for biogeography and concerted evolution. PNAS 92: 6813-6817.
    • (1995) PNAS , vol.92 , pp. 6813-6817
    • Sang, T.1    Crawford, D.J.2    Stuessy, T.F.3
  • 66
    • 0031406079 scopus 로고    scopus 로고
    • Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)
    • Sang T, Crawford D, TF(1997) Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). Am J Bot 84: 1120-1136. (Pubitemid 28106981)
    • (1997) American Journal of Botany , vol.84 , Issue.8 , pp. 1120-1136
    • Sang, T.1    Crawford, D.J.2    Stuessy, T.F.3
  • 68
    • 0030158571 scopus 로고    scopus 로고
    • The Staden sequence analysis package
    • Staden R (1996) The Staden sequence analysis package. Mol Biotechnol 5: 233-241.
    • (1996) Mol Biotechnol , vol.5 , pp. 233-241
    • Staden, R.1
  • 69
    • 42649090839 scopus 로고    scopus 로고
    • DNA barcoding in the cycadales: Testing the potential of proposed barcoding markers for species identification of cycads
    • doi:10.1371/journal.pone.0001154
    • Sass C, Little DP, Stevenson DW, Specht CD (2007) DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads. PLoS ONE 2: e1154. doi:10.1371/journal.pone.0001154.
    • (2007) PLoS ONE , vol.2
    • Sass, C.1    Little, D.P.2    Stevenson, D.W.3    Specht, C.D.4
  • 70
    • 33847767178 scopus 로고    scopus 로고
    • A comparison of algorithms for the identification of specimens using DNA barcodes: Examples from gymnosperms
    • DOI 10.1111/j.1096-0031.2006.00126.x
    • Little DP, Stevenson DW (2007) A comparison of algorithms for the identification of specimens using DNA barcodes: examples from gymnosperms. Cladistics 23: 1-21. (Pubitemid 46376264)
    • (2007) Cladistics , vol.23 , Issue.1 , pp. 1-21
    • Little, D.P.1    Stevenson, D.Wm.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.