DNA-BAR: Distinguisher selection for DNA barcoding

Bioinformatics

Volumn 21, Issue 16, 2005, Pages 3424-3426

  DasGupta, B ^a   Konwar, K M ^b   Mǎndoiu, Ion I ^b   Shvartsman, A A ^b  

^a 1120 Science and Engineering Offices   (United States)

^b UNIVERSITY OF CONNECTICUT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DNA; GUANINE;

ARTICLE; COMPUTER PROGRAM; CROSS HYBRIDIZATION; DNA CONTENT; DNA HYBRIDIZATION; DNA PROBE; GENOMICS; MELTING POINT; MICROBIAL IDENTIFICATION; NONHUMAN; PRIORITY JOURNAL;

EID: 24044437182     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti547     Document Type: Article

References (7)

1. Ben-Dor,A. et al. (2000) Universal DNA tag systems: A combinatorial design scheme. J. Comput. Biol., 7, 503-519.
2. Borneman,J. et al. (2001) Probe selection algorithms with applications in the analysis of microbial communities. Bioinformatics 1, 1-9.
3. DasGupta,B. et al. Highly scalable algorithms for robust string barcoding. Intl. J. of Bioinformatics Research and Applications, Vol 1, 2, 2005.
4. Hebert,P.D.N. et al. (2004) Identification of birds through DNA barcodes. Public Library of Science Biology, 2, 1657-1663.
5. Hirschhorn,J.N. et al. (2000) SBE-TAGS: An array-based method for efficient single-nucleotide polymorphism genotyping. Proc. Natl. Acad. Sci. USA, 97, 12164-12169.
6. Klau,G.W., et al. (2004) Optimal robust non-unique probe selection using integer linear programming. Bioinformatics, 20 (Suppl. 1), i186-i193.
7. Rash,S. and Gusfield,D. (2002) String barcoding: Uncovering optimal virus signatures. In Proceeding of the 6th Annual International Conference on Computational Biology, pp. 254-261.