-
1
-
-
78650636946
-
Herbaria are a major frontier for species discovery
-
Bebber DP, Carine MA, Wood JRI, Wortley AH, Harris DJ, et al. (2010) Herbaria are a major frontier for species discovery. Proc Natl Acad Sci USA 107: 22169-22171.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 22169-22171
-
-
Bebber, D.P.1
Carine, M.A.2
Wood, J.R.I.3
Wortley, A.H.4
Harris, D.J.5
-
2
-
-
77956271593
-
Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia
-
Sebastian P, Schaefer H, Telford IRH, Renner SS, (2010) Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia. Proc Natl Acad Sci USA 107: 14269-14273.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14269-14273
-
-
Sebastian, P.1
Schaefer, H.2
Telford, I.R.H.3
Renner, S.S.4
-
3
-
-
72849144434
-
Sequencing technologies - the next generation
-
Metzker ML, (2010) Sequencing technologies - the next generation. Nat Rev Genet 11: 31-46.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
4
-
-
0032925082
-
DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi
-
Cubero OF, Crespo A, Fatehi J, Bridge PD, (1998) DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi. Pl Sys Evol 216: 243-249.
-
(1998)
Pl Sys Evol
, vol.216
, pp. 243-249
-
-
Cubero, O.F.1
Crespo, A.2
Fatehi, J.3
Bridge, P.D.4
-
5
-
-
0036056608
-
Comparison of seven DNA extraction and amplification protocols in historic herbarium specimens of Juncaceae
-
Drábková L, Kirschner J, Vlcek C, (2002) Comparison of seven DNA extraction and amplification protocols in historic herbarium specimens of Juncaceae. Pl Mol Biol Rep 20: 161-175.
-
(2002)
Pl Mol Biol Rep
, vol.20
, pp. 161-175
-
-
Drábková, L.1
Kirschner, J.2
Vlcek, C.3
-
6
-
-
56349089012
-
Amplification of cox2 (~620 bp) from 2 mg of up to 129 years old herbarium specimens, comparing 19 extraction methods and 15 polymerases
-
Telle S, Thines M, (2008) Amplification of cox2 (~620 bp) from 2 mg of up to 129 years old herbarium specimens, comparing 19 extraction methods and 15 polymerases. Plos One 3: e3584.
-
(2008)
Plos One
, vol.3
-
-
Telle, S.1
Thines, M.2
-
7
-
-
0000951816
-
Preservation of plant species for DNA restriction endonuclease analysis
-
Doyle JJ, Dickson EE, (1987) Preservation of plant species for DNA restriction endonuclease analysis. Taxon 36: 715-722.
-
(1987)
Taxon
, vol.36
, pp. 715-722
-
-
Doyle, J.J.1
Dickson, E.E.2
-
8
-
-
0000950505
-
In situ preservation of DNA in plant specimens
-
Pyle MM, Adams RP, (1989) In situ preservation of DNA in plant specimens. Taxon 38: 576-581.
-
(1989)
Taxon
, vol.38
, pp. 576-581
-
-
Pyle, M.M.1
Adams, R.P.2
-
9
-
-
0027146234
-
DNA analysis of tropical plant species: an assessment of different drying methods
-
Harris SA, (1993) DNA analysis of tropical plant species: an assessment of different drying methods. Pl Syst Evol 188: 57-64.
-
(1993)
Pl Syst Evol
, vol.188
, pp. 57-64
-
-
Harris, S.A.1
-
10
-
-
0000380945
-
Silica gel: an ideal material for field preservation of leaf samples for DNA studies
-
Chase MW, Hills HH, (1991) Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon 40: 215-220.
-
(1991)
Taxon
, vol.40
, pp. 215-220
-
-
Chase, M.W.1
Hills, H.H.2
-
11
-
-
0036898005
-
Effect of fixatives and tissue processing on the content and integrity of nucleic acids
-
Srinivansan M, Sedmak D, Jewell S, (2002) Effect of fixatives and tissue processing on the content and integrity of nucleic acids. Am J Pathol 161: 1961-1971.
-
(2002)
Am J Pathol
, vol.161
, pp. 1961-1971
-
-
Srinivansan, M.1
Sedmak, D.2
Jewell, S.3
-
12
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
Lindahl T, (1993) Instability and decay of the primary structure of DNA. Nature 362: 709-715.
-
(1993)
Nature
, vol.362
, pp. 709-715
-
-
Lindahl, T.1
-
13
-
-
19944416873
-
Genetic analyses from ancient DNA
-
Pääbo S, Poinar H, Serre D, Jaenicke-Despres V, Hebler J, et al. (2004) Genetic analyses from ancient DNA. Annu Rev Genet 38: 645-679.
-
(2004)
Annu Rev Genet
, vol.38
, pp. 645-679
-
-
Pääbo, S.1
Poinar, H.2
Serre, D.3
Jaenicke-Despres, V.4
Hebler, J.5
-
14
-
-
0033520969
-
Quality control by DNA repair
-
Lindahl T, Wood RD, (1999) Quality control by DNA repair. Science 286: 1897-1905.
-
(1999)
Science
, vol.286
, pp. 1897-1905
-
-
Lindahl, T.1
Wood, R.D.2
-
15
-
-
0029197991
-
The use of hebarium specimens in DNA phylogenetics: evaluation and improvement
-
Savolainen V, Cuénoud P, Spichiger R, Martinez MDP, Crèvecoeur M, et al. (1995) The use of hebarium specimens in DNA phylogenetics: evaluation and improvement. Pl Syst Evol 197: 87-98.
-
(1995)
Pl Syst Evol
, vol.197
, pp. 87-98
-
-
Savolainen, V.1
Cuénoud, P.2
Spichiger, R.3
Martinez, M.D.P.4
Crèvecoeur, M.5
-
16
-
-
59549087357
-
Repair and tolerance of oxidative DNA damage in plants
-
Roldán-Arjona T, Ariza RR, (2009) Repair and tolerance of oxidative DNA damage in plants. Mut Res 681: 169-179.
-
(2009)
Mut Res
, vol.681
, pp. 169-179
-
-
Roldán-Arjona, T.1
Ariza, R.R.2
-
17
-
-
78650744276
-
DNA repair in organelles: pathways, organization, regulation, relevance in disease and aging
-
Boesch P, Weber-Lotfi F, Ibrahim N, Tarasenko V, Cosset A, et al. (2011) DNA repair in organelles: pathways, organization, regulation, relevance in disease and aging. Biochim Bioph Acta 1813: 186-200.
-
(2011)
Biochim Bioph Acta
, vol.1813
, pp. 186-200
-
-
Boesch, P.1
Weber-Lotfi, F.2
Ibrahim, N.3
Tarasenko, V.4
Cosset, A.5
-
18
-
-
0037219039
-
Distribution patterns of postmortem damage in human mitochondrial DNA
-
Gilbert MTP, Hansen AJ, Willerslev E, Rudbeck L, Barnes I, et al. (2003) Distribution patterns of postmortem damage in human mitochondrial DNA. Am J Hum Genet 72: 48-61.
-
(2003)
Am J Hum Genet
, vol.72
, pp. 48-61
-
-
Gilbert, M.T.P.1
Hansen, A.J.2
Willerslev, E.3
Rudbeck, L.4
Barnes, I.5
-
19
-
-
33748783644
-
Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA
-
Stiller M, Green RE, Ronan M, Simons JF, Du L, et al. (2006) Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA. Proc Natl Acad Sci USA 103: 13578-13584.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 13578-13584
-
-
Stiller, M.1
Green, R.E.2
Ronan, M.3
Simons, J.F.4
Du, L.5
-
20
-
-
0002594984
-
A rapid DNA isolation procedure for small quantities of fresh leaf tissue
-
Doyle JJ, Doyle JL, (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phyt Bull 19: 11-15.
-
(1987)
Phyt Bull
, vol.19
, pp. 11-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
21
-
-
34547591343
-
Primer3Plus, an enhanced web interface to Primer3
-
Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R, et al. (2007) Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res 35: W71-W74.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Untergasser, A.1
Nijveen, H.2
Rao, X.3
Bisseling, T.4
Geurts, R.5
-
22
-
-
69149084832
-
A DNA barcode for land plants
-
Hollingsworth PM, Forrest LL, Spouge JL, Hajibabaei M, Ratnasingham S, et al. (2009) A DNA barcode for land plants. Proc Natl Acad Sci USA 106: 12794-12797.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 12794-12797
-
-
Hollingsworth, P.M.1
Forrest, L.L.2
Spouge, J.L.3
Hajibabaei, M.4
Ratnasingham, S.5
-
23
-
-
75649134588
-
PLAZA: a comparative genomics resource to study gene and genome evolution in plants
-
Proost S, Van Bel M, Sterck L, Billiau K, Van Parys T, et al. (2009) PLAZA: a comparative genomics resource to study gene and genome evolution in plants. Pl Cell 21: 3718-3731.
-
(2009)
Pl Cell
, vol.21
, pp. 3718-3731
-
-
Proost, S.1
van Bel, M.2
Sterck, L.3
Billiau, K.4
van Parys, T.5
-
24
-
-
75949108066
-
Galaxy: a web-based genome analysis tool for experimentalists
-
Blankenberg D, Von Kuster G, Coraor N, Ananda G, Lazarus R, et al. (2010) Galaxy: a web-based genome analysis tool for experimentalists. Curr Protoc Mol Biol 19: 10.1-10.21.
-
(2010)
Curr Protoc Mol Biol
, vol.19
, pp. 1-21
-
-
Blankenberg, D.1
von Kuster, G.2
Coraor, N.3
Ananda, G.4
Lazarus, R.5
-
25
-
-
77955801615
-
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
The Galaxy Team
-
Goecks J, Nekrutenko A, Taylor J, The Galaxy Team (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 25: R86.
-
(2010)
Genome Biol
, vol.25
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
26
-
-
77954489376
-
Manipulation of FASTQ data with Galaxy
-
Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, et al. (2010) Manipulation of FASTQ data with Galaxy. Bioinform 26: 1783-1785.
-
(2010)
Bioinform
, vol.26
, pp. 1783-1785
-
-
Blankenberg, D.1
Gordon, A.2
von Kuster, G.3
Coraor, N.4
Taylor, J.5
-
27
-
-
0035143521
-
Statistical evidence for miscoding lesions in ancient DNA templates
-
Hansen AJ, Willerslev E, Wiuf C, Mourier T, Arctander P, (2001) Statistical evidence for miscoding lesions in ancient DNA templates. Mol Biol Evol 18: 262-265.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 262-265
-
-
Hansen, A.J.1
Willerslev, E.2
Wiuf, C.3
Mourier, T.4
Arctander, P.5
-
28
-
-
0025230558
-
DNA damage promotes jumping between templates during enzymatic amplification
-
Pääbo S, Irwin DM, Wilson AC, (1990) DNA damage promotes jumping between templates during enzymatic amplification. J Biol Chem 265: 4718-4721.
-
(1990)
J Biol Chem
, vol.265
, pp. 4718-4721
-
-
Pääbo, S.1
Irwin, D.M.2
Wilson, A.C.3
-
29
-
-
79551640407
-
How many species of flowering plants are there?
-
Jobba LN, Roberts DL, Pimm SL, (2011) How many species of flowering plants are there? Proc Biol Sci 278: 554-559.
-
(2011)
Proc Biol Sci
, vol.278
, pp. 554-559
-
-
Jobba, L.N.1
Roberts, D.L.2
Pimm, S.L.3
-
30
-
-
43149104751
-
Programmed cell death in plants: distinguishing between different modes
-
Reape TJ, Molony EM, McCabe PF, (2008) Programmed cell death in plants: distinguishing between different modes. J Exp Bot 59: 435-444.
-
(2008)
J Exp Bot
, vol.59
, pp. 435-444
-
-
Reape, T.J.1
Molony, E.M.2
McCabe, P.F.3
-
31
-
-
0030879765
-
A programmed cell death pathway activated in carrot cells cultured at low cell density
-
McCabe PF, Levine A, Meijer PJ, Tapon NA, Pennell RI, (1997) A programmed cell death pathway activated in carrot cells cultured at low cell density. Plant J 12: 267-280.
-
(1997)
Plant J
, vol.12
, pp. 267-280
-
-
McCabe, P.F.1
Levine, A.2
Meijer, P.J.3
Tapon, N.A.4
Pennell, R.I.5
-
32
-
-
78049474352
-
Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants
-
Gill SS, Tuteja N, (2010) Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants. Plant Physiol Biochem 48: 909-930.
-
(2010)
Plant Physiol Biochem
, vol.48
, pp. 909-930
-
-
Gill, S.S.1
Tuteja, N.2
-
33
-
-
0015504248
-
Rate of depurination of native deoxyribonucleic acid
-
Lindahl T, Nyberg B, (1972) Rate of depurination of native deoxyribonucleic acid. Biochem 11: 3610-3618.
-
(1972)
Biochem
, vol.11
, pp. 3610-3618
-
-
Lindahl, T.1
Nyberg, B.2
-
34
-
-
0025342965
-
Repair of intrinsic DNA lesions
-
Lindahl T, (1990) Repair of intrinsic DNA lesions. Mutation Res 238: 305-311.
-
(1990)
Mutation Res
, vol.238
, pp. 305-311
-
-
Lindahl, T.1
-
35
-
-
33745358864
-
Crosslinks rather than strand breaks determine access to ancient DNA sequences from frozen sediments
-
Hansen AJ, Mitchell DL, Wiuf C, Paniker L, Brand TB, et al. (2006) Crosslinks rather than strand breaks determine access to ancient DNA sequences from frozen sediments. Genetics 173: 1175-1179.
-
(2006)
Genetics
, vol.173
, pp. 1175-1179
-
-
Hansen, A.J.1
Mitchell, D.L.2
Wiuf, C.3
Paniker, L.4
Brand, T.B.5
-
36
-
-
85052488936
-
Road blocks on paleogenomes - polymerase extension profiling reveals the frequency of blocking lesions in ancient DNA
-
Heyn P, Stenzel U, Briggs AW, Kircher M, Hofreiter M, et al. (2010) Road blocks on paleogenomes - polymerase extension profiling reveals the frequency of blocking lesions in ancient DNA. Nucleic Acids Res 38: e161.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Heyn, P.1
Stenzel, U.2
Briggs, A.W.3
Kircher, M.4
Hofreiter, M.5
-
37
-
-
77950862213
-
Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA
-
Briggs AW, Stenzel U, Meyer M, Krausse J, Kircher M, et al. (2010) Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA. Nucleic Acids Res 38: e87.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Briggs, A.W.1
Stenzel, U.2
Meyer, M.3
Krausse, J.4
Kircher, M.5
-
38
-
-
43649097718
-
Engineered polymerases amplify the potential of ancient DNA
-
Shapiro B, (2008) Engineered polymerases amplify the potential of ancient DNA. Trends Biotechnol 26: 285-287.
-
(2008)
Trends Biotechnol
, vol.26
, pp. 285-287
-
-
Shapiro, B.1
-
39
-
-
34848866065
-
Novel high-resolution characterization of ancient DNA reveals C & U-type base modification events as the sole cause of post mortem miscoding lesions
-
Brotherton P, Endicott P, Sanchez JJ, Beaumont M, Barnett R, et al. (2007) Novel high-resolution characterization of ancient DNA reveals C & U-type base modification events as the sole cause of post mortem miscoding lesions. Nucleic Acids Res 35: 5717-5728.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5717-5728
-
-
Brotherton, P.1
Endicott, P.2
Sanchez, J.J.3
Beaumont, M.4
Barnett, R.5
-
40
-
-
34848827224
-
Patterns of damage in genomic DNA sequences from a Neandertal
-
Briggs AW, Stenzel U, Johnson PLF, Green RE, Kelso J, et al. (2007) Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci USA 104: 14616-14621.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 14616-14621
-
-
Briggs, A.W.1
Stenzel, U.2
Johnson, P.L.F.3
Green, R.E.4
Kelso, J.5
-
41
-
-
0035581087
-
DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
-
Hofreiter M, Jaenicke V, Serre D, von Haeseler A, Pääbo S, (2001) DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res 29: 4793-4799.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4793-4799
-
-
Hofreiter, M.1
Jaenicke, V.2
Serre, D.3
von Haeseler, A.4
Pääbo, S.5
-
42
-
-
70849112619
-
Unparalleled GC content in the plastid DNA of Selaginella
-
Smith DR, (2009) Unparalleled GC content in the plastid DNA of Selaginella. Plant Mol Biol 71: 627-639.
-
(2009)
Plant Mol Biol
, vol.71
, pp. 627-639
-
-
Smith, D.R.1
-
43
-
-
60349097605
-
A multiple-method approach reveals a declining amount of chloroplast DNA during development in Arabidopsis
-
Rowan BA, Oldenburg DJ, Bendich AJ, (2009) A multiple-method approach reveals a declining amount of chloroplast DNA during development in Arabidopsis. BCM Plant Biol 9: 3.
-
(2009)
BCM Plant Biol
, vol.9
, pp. 3
-
-
Rowan, B.A.1
Oldenburg, D.J.2
Bendich, A.J.3
-
44
-
-
45349096122
-
New developments in ancient genomics
-
Millar CD, Huynen L, Subramanian S, Mohandesan E, Lambert DM, (2008) New developments in ancient genomics. Trends Ecol Evol 7: 386-393.
-
(2008)
Trends Ecol Evol
, vol.7
, pp. 386-393
-
-
Millar, C.D.1
Huynen, L.2
Subramanian, S.3
Mohandesan, E.4
Lambert, D.M.5
|