-
2
-
-
84877815476
-
Using multiple structural proteomics approaches for the characterization of prion proteins
-
Serpa J.J., Patterson A.P., Pan J., Han J., Wishart D.S., Petrotchenko E.V., et al. Using multiple structural proteomics approaches for the characterization of prion proteins. J Proteomics 2013, 81:31-42.
-
(2013)
J Proteomics
, vol.81
, pp. 31-42
-
-
Serpa, J.J.1
Patterson, A.P.2
Pan, J.3
Han, J.4
Wishart, D.S.5
Petrotchenko, E.V.6
-
3
-
-
84861998709
-
Mass spectrometry-based structural proteomics
-
Serpa J.J., Parker C.E., Petrotchenko E.V., Han J., Pan J., Borchers C.H. Mass spectrometry-based structural proteomics. Eur J Mass Spectrom 2012, 18:251-267.
-
(2012)
Eur J Mass Spectrom
, vol.18
, pp. 251-267
-
-
Serpa, J.J.1
Parker, C.E.2
Petrotchenko, E.V.3
Han, J.4
Pan, J.5
Borchers, C.H.6
-
4
-
-
0034067250
-
Characterization of a discontinuous epitope of the human immunodeficiency virus (HIV) core protein p24 by epitope excision and differential chemical modification followed by mass spectrometric peptide mapping analysis
-
Hochleitner E.O., Borchers C., Parker C., Bienstock R.J., Tomer K.B. Characterization of a discontinuous epitope of the human immunodeficiency virus (HIV) core protein p24 by epitope excision and differential chemical modification followed by mass spectrometric peptide mapping analysis. Protein Sci 2000, 9:487-496.
-
(2000)
Protein Sci
, vol.9
, pp. 487-496
-
-
Hochleitner, E.O.1
Borchers, C.2
Parker, C.3
Bienstock, R.J.4
Tomer, K.B.5
-
5
-
-
34548337296
-
Hydroxyl radical-mediated modification of proteins as probes for structural proteomics
-
Xu G., Chance M.R. Hydroxyl radical-mediated modification of proteins as probes for structural proteomics. Chem Rev 2007, 107:3514-3543.
-
(2007)
Chem Rev
, vol.107
, pp. 3514-3543
-
-
Xu, G.1
Chance, M.R.2
-
6
-
-
58149462266
-
Structural characterization of short-lived protein unfolding intermediates by laser-induced oxidative labeling and mass spectrometry
-
Stocks B.B., Konermann L. Structural characterization of short-lived protein unfolding intermediates by laser-induced oxidative labeling and mass spectrometry. Anal Chem 2009, 81:20-27.
-
(2009)
Anal Chem
, vol.81
, pp. 20-27
-
-
Stocks, B.B.1
Konermann, L.2
-
7
-
-
77951765288
-
Time-dependent changes in side chain solvent accessibility during cytochrome c folding probed by pulsed oxidative labeling and mass spectrometry
-
Stocks B.B., Konermann L. Time-dependent changes in side chain solvent accessibility during cytochrome c folding probed by pulsed oxidative labeling and mass spectrometry. J Mol Biol 2010, 398:362-373.
-
(2010)
J Mol Biol
, vol.398
, pp. 362-373
-
-
Stocks, B.B.1
Konermann, L.2
-
8
-
-
27844593258
-
Laser flash photolysis of hydrogen peroxide to oxidize protein solvent-accessible residues on the microsecond timescale
-
Hambly D.M., Gross M.L. Laser flash photolysis of hydrogen peroxide to oxidize protein solvent-accessible residues on the microsecond timescale. J Am Soc Mass Spectrom 2005, 16:2057-2063.
-
(2005)
J Am Soc Mass Spectrom
, vol.16
, pp. 2057-2063
-
-
Hambly, D.M.1
Gross, M.L.2
-
9
-
-
68849107091
-
Fast photochemical oxidation of protein footprints faster than protein unfolding
-
Gau B.C., Sharp J.S., Rempel D.L., Gross M.L. Fast photochemical oxidation of protein footprints faster than protein unfolding. Anal Chem 2009, 81:6563-6571.
-
(2009)
Anal Chem
, vol.81
, pp. 6563-6571
-
-
Gau, B.C.1
Sharp, J.S.2
Rempel, D.L.3
Gross, M.L.4
-
10
-
-
80655131110
-
Thermodynamic analysis of protein-ligand interactions in complex biological mixtures using a shotgun proteomics approach
-
Dearmond P.D., Xu Y., Strickland E.C., Daniels K.G., Fitzgerald M.C. Thermodynamic analysis of protein-ligand interactions in complex biological mixtures using a shotgun proteomics approach. J Proteome Res 2011, 10:4948-4958.
-
(2011)
J Proteome Res
, vol.10
, pp. 4948-4958
-
-
Dearmond, P.D.1
Xu, Y.2
Strickland, E.C.3
Daniels, K.G.4
Fitzgerald, M.C.5
-
11
-
-
7544239102
-
Amyloid aggregates of the prion peptide PrP106-126 are destabilised by oxidation and by the action of dendrimers
-
Heegaard P.M., Pedersen H.G., Flink J., Boas U. Amyloid aggregates of the prion peptide PrP106-126 are destabilised by oxidation and by the action of dendrimers. FEBS Lett 2004, 577:127-133.
-
(2004)
FEBS Lett
, vol.577
, pp. 127-133
-
-
Heegaard, P.M.1
Pedersen, H.G.2
Flink, J.3
Boas, U.4
-
12
-
-
7944233490
-
Oxidation of methionine residues in the prion protein by hydrogen peroxide
-
Requena J.R., Dimitrova M.N., Legname G., Teijeira S., Prusiner S.B., Levine R.L. Oxidation of methionine residues in the prion protein by hydrogen peroxide. Arch Biochem Biophys 2004, 432:188-195.
-
(2004)
Arch Biochem Biophys
, vol.432
, pp. 188-195
-
-
Requena, J.R.1
Dimitrova, M.N.2
Legname, G.3
Teijeira, S.4
Prusiner, S.B.5
Levine, R.L.6
-
14
-
-
0033568535
-
Millisecond radiolytic modification of peptides by synchrotron X-rays identified by mass spectrometry
-
Maleknia S.D., Brenowitz M., Chance M.R. Millisecond radiolytic modification of peptides by synchrotron X-rays identified by mass spectrometry. Anal Chem 1999, 71:3965-3973.
-
(1999)
Anal Chem
, vol.71
, pp. 3965-3973
-
-
Maleknia, S.D.1
Brenowitz, M.2
Chance, M.R.3
-
15
-
-
33751503526
-
Prion protein does not redox-silence Cu2+, but is a sacrificial quencher of hydroxyl radicals
-
Nadal R.C., Abdelraheim S.R., Brazier M.W., Rigby S.E., Brown D.R., Viles J.H. Prion protein does not redox-silence Cu2+, but is a sacrificial quencher of hydroxyl radicals. Free Radic Biol Med 2007, 42:79-89.
-
(2007)
Free Radic Biol Med
, vol.42
, pp. 79-89
-
-
Nadal, R.C.1
Abdelraheim, S.R.2
Brazier, M.W.3
Rigby, S.E.4
Brown, D.R.5
Viles, J.H.6
-
16
-
-
66049152925
-
Design of anti- and pro-aggregation variants to assess the effects of methionine oxidation in human prion protein
-
Wolschner C., Giese A., Kretzschmar H.A., Huber R., Moroder L., Budisa N. Design of anti- and pro-aggregation variants to assess the effects of methionine oxidation in human prion protein. Proc Natl Acad Sci U S A 2009, 106:7756-7761.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 7756-7761
-
-
Wolschner, C.1
Giese, A.2
Kretzschmar, H.A.3
Huber, R.4
Moroder, L.5
Budisa, N.6
-
17
-
-
0035912772
-
Copper-catalyzed oxidation of the recombinant SHa(29-231) prion protein
-
Requena J.R., Groth D., Legname G., Stadtman E.R., Prusiner S.B., Levine R.L. Copper-catalyzed oxidation of the recombinant SHa(29-231) prion protein. Proc Natl Acad Sci U S A 2001, 98:7170-7175.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 7170-7175
-
-
Requena, J.R.1
Groth, D.2
Legname, G.3
Stadtman, E.R.4
Prusiner, S.B.5
Levine, R.L.6
-
18
-
-
84865234351
-
Methionine oxidation perturbs the structural core of the prion protein and suggests a generic misfolding pathway
-
Younan N.D., Nadal R.C., Davies P., Brown D.R., Viles J.H. Methionine oxidation perturbs the structural core of the prion protein and suggests a generic misfolding pathway. J Biol Chem 2012, 287:28263-28275.
-
(2012)
J Biol Chem
, vol.287
, pp. 28263-28275
-
-
Younan, N.D.1
Nadal, R.C.2
Davies, P.3
Brown, D.R.4
Viles, J.H.5
-
19
-
-
0033532584
-
Selective oxidation of methionine residues in prion proteins
-
Wong B.S., Wang H., Brown D.R., Jones I.M. Selective oxidation of methionine residues in prion proteins. Biochem Biophys Res Commun 1999, 259:352-355.
-
(1999)
Biochem Biophys Res Commun
, vol.259
, pp. 352-355
-
-
Wong, B.S.1
Wang, H.2
Brown, D.R.3
Jones, I.M.4
-
20
-
-
79951623972
-
Detailed biophysical characterization of the acid-induced PrP(c) to PrP(β) conversion process
-
Bjorndahl T.C., Zhou G.P., Liu X., Perez-Pineiro R., Semenchenko V., Saleem F., et al. Detailed biophysical characterization of the acid-induced PrP(c) to PrP(β) conversion process. Biochemistry 2011, 50:1162-1173.
-
(2011)
Biochemistry
, vol.50
, pp. 1162-1173
-
-
Bjorndahl, T.C.1
Zhou, G.P.2
Liu, X.3
Perez-Pineiro, R.4
Semenchenko, V.5
Saleem, F.6
-
21
-
-
84897083659
-
-
ProteinProspector [Access date]
-
ProteinProspector ProteinProspector, v 5.10.11 [Access date]. http://prospector.ucsf.edu/prospector/mshome.htm.
-
ProteinProspector, v 5.10.11
-
-
-
22
-
-
0034480310
-
Electrospray mass and tandem mass spectrometry identification of ozone oxidation products of amino acids and small peptides
-
Kotiaho T., Eberlin M.N., Vainiotalo P., Kostiainen R. Electrospray mass and tandem mass spectrometry identification of ozone oxidation products of amino acids and small peptides. J Am Soc Mass Spectrom 2000, 11:526-535.
-
(2000)
J Am Soc Mass Spectrom
, vol.11
, pp. 526-535
-
-
Kotiaho, T.1
Eberlin, M.N.2
Vainiotalo, P.3
Kostiainen, R.4
-
23
-
-
0038825874
-
Detection and characterization of methionine oxidation in peptides by collision-induced dissociation and electron capture dissociation
-
Guan Z., Yates N.A., Bakhtiar R. Detection and characterization of methionine oxidation in peptides by collision-induced dissociation and electron capture dissociation. J Am Soc Mass Spectrom 2003, 14:605-613.
-
(2003)
J Am Soc Mass Spectrom
, vol.14
, pp. 605-613
-
-
Guan, Z.1
Yates, N.A.2
Bakhtiar, R.3
-
24
-
-
0029040377
-
Mass spectrometric identification of amino acid transformations during oxidation of peptides and proteins: modifications of methionine and tyrosine
-
Chowdhury S.K., Eshraghi J., Wolfe H., Forde D., Hlavac A.G., Johnston D. Mass spectrometric identification of amino acid transformations during oxidation of peptides and proteins: modifications of methionine and tyrosine. Anal Chem 1995, 67:390-398.
-
(1995)
Anal Chem
, vol.67
, pp. 390-398
-
-
Chowdhury, S.K.1
Eshraghi, J.2
Wolfe, H.3
Forde, D.4
Hlavac, A.G.5
Johnston, D.6
-
26
-
-
33847648434
-
Oxidation artifacts in the electrospray mass spectrometry of Abeta Peptide
-
Chen M., Cook K.D. Oxidation artifacts in the electrospray mass spectrometry of Abeta Peptide. Anal Chem 2007, 79:2031-2036.
-
(2007)
Anal Chem
, vol.79
, pp. 2031-2036
-
-
Chen, M.1
Cook, K.D.2
-
27
-
-
0031812471
-
The identification of peptide modifications derived from gel-separated proteins using electrospray triple quadrupole and ion trap analyses
-
Swiderek K.M., Davis M.T., Lee T.D. The identification of peptide modifications derived from gel-separated proteins using electrospray triple quadrupole and ion trap analyses. Electrophoresis 1998, 19:989-997.
-
(1998)
Electrophoresis
, vol.19
, pp. 989-997
-
-
Swiderek, K.M.1
Davis, M.T.2
Lee, T.D.3
-
28
-
-
2342613564
-
Prevention of artifactual protein oxidation generated during sodium dodecyl sulfate-gel electrophoresis
-
Sun G., Anderson V.E. Prevention of artifactual protein oxidation generated during sodium dodecyl sulfate-gel electrophoresis. Electrophoresis 2004, 25:959-965.
-
(2004)
Electrophoresis
, vol.25
, pp. 959-965
-
-
Sun, G.1
Anderson, V.E.2
-
29
-
-
28244486826
-
Methionine oxidation interferes with conversion of the prion protein into the fibrillar proteinase K-resistant conformation
-
Breydo L., Bocharova O.V., Makarava N., Salnikov V.V., Anderson M., Baskakov I.V. Methionine oxidation interferes with conversion of the prion protein into the fibrillar proteinase K-resistant conformation. Biochemistry 2005, 44:15534-15543.
-
(2005)
Biochemistry
, vol.44
, pp. 15534-15543
-
-
Breydo, L.1
Bocharova, O.V.2
Makarava, N.3
Salnikov, V.V.4
Anderson, M.5
Baskakov, I.V.6
-
30
-
-
0035902531
-
Location and properties of metal-binding sites on the human prion protein
-
Jackson G.S., Murray I., Hosszu L.L.P., Gibbs N., Waltho J.P., Clarke A.R., et al. Location and properties of metal-binding sites on the human prion protein. Proc Natl Acad Sci U S A 2001, 98:8531-8535.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 8531-8535
-
-
Jackson, G.S.1
Murray, I.2
Hosszu, L.L.P.3
Gibbs, N.4
Waltho, J.P.5
Clarke, A.R.6
-
31
-
-
0037965529
-
Prion protein selectively binds copper(II) ions
-
Stöckel J., Safar J., Wallace A.C., Cohen F.E., Prusiner S.B. Prion protein selectively binds copper(II) ions. Biochemistry 1998, 37:7185-7193.
-
(1998)
Biochemistry
, vol.37
, pp. 7185-7193
-
-
Stöckel, J.1
Safar, J.2
Wallace, A.C.3
Cohen, F.E.4
Prusiner, S.B.5
-
32
-
-
77958126446
-
Oxidation of helix-3 methionines precedes the formation of PK-resistant PrP
-
Canello T., Frid K., Gabizon R., Lisa S., Friedler A., Moskovitz J., et al. Oxidation of helix-3 methionines precedes the formation of PK-resistant PrP. PLoS Pathog 2010, 6:e1000977.
-
(2010)
PLoS Pathog
, vol.6
-
-
Canello, T.1
Frid, K.2
Gabizon, R.3
Lisa, S.4
Friedler, A.5
Moskovitz, J.6
-
33
-
-
0035910498
-
Cleavage of the amino terminus of the prion protein by reactive oxygen species
-
McMahon H.E.M., Mangé A., Nishida N., Créminon C., Casanova D., Lehmann S. Cleavage of the amino terminus of the prion protein by reactive oxygen species. J Biol Chem 2001, 276:2286-2291.
-
(2001)
J Biol Chem
, vol.276
, pp. 2286-2291
-
-
McMahon, H.E.M.1
Mangé, A.2
Nishida, N.3
Créminon, C.4
Casanova, D.5
Lehmann, S.6
-
34
-
-
84873313592
-
Burial of the polymorphic residue 129 in amyloid fibrils of prion stop mutants
-
Skora L., Fonseca-Ornelas L., Hofele R.V., Riedel D., Giller K., Watzlawik J., et al. Burial of the polymorphic residue 129 in amyloid fibrils of prion stop mutants. J Biol Chem 2013, 288:2994-3002.
-
(2013)
J Biol Chem
, vol.288
, pp. 2994-3002
-
-
Skora, L.1
Fonseca-Ornelas, L.2
Hofele, R.V.3
Riedel, D.4
Giller, K.5
Watzlawik, J.6
-
35
-
-
84863807078
-
Use of proteinase K non-specific digestion for selective and comprehensive identification of interpeptide crosslinks: application to prion proteins
-
[M111.013524]
-
Petrotchenko E.V., Serpa J.J., Berjanskii M., Suriyamongkol B.P., Wishart D.S., Borchers C.H. Use of proteinase K non-specific digestion for selective and comprehensive identification of interpeptide crosslinks: application to prion proteins. Mol Cell Proteomics 2012, 11. [M111.013524].
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Petrotchenko, E.V.1
Serpa, J.J.2
Berjanskii, M.3
Suriyamongkol, B.P.4
Wishart, D.S.5
Borchers, C.H.6
-
36
-
-
34250681413
-
Diversity in prion protein oligomerization pathways results from domain expansion as revealed by hydrogen/deuterium exchange and disulfide linkage
-
Eghiaian F., Daubenfeld T., Quenet Y., van Audenhaege M., Bouin A.-P., van der Rest G., et al. Diversity in prion protein oligomerization pathways results from domain expansion as revealed by hydrogen/deuterium exchange and disulfide linkage. Proc Natl Acad Sci 2007, 104:7414-7419.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 7414-7419
-
-
Eghiaian, F.1
Daubenfeld, T.2
Quenet, Y.3
van Audenhaege, M.4
Bouin, A.-P.5
van der Rest, G.6
|