메뉴 건너뛰기




Volumn 506, Issue 7489, 2014, Pages 494-497

Genetics of single-cell protein abundance variation in large yeast populations

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL PROTEIN; GREEN FLUORESCENT PROTEIN;

EID: 84896724814     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature12904     Document Type: Article
Times cited : (98)

References (41)
  • 1
    • 33750204290 scopus 로고    scopus 로고
    • Genetics of global gene expression
    • Rockman, M. V. & Kruglyak, L. Genetics of global gene expression. Nature Rev. Genet. 7, 862-872 (2006).
    • (2006) Nature Rev. Genet. , vol.7 , pp. 862-872
    • Rockman, M.V.1    Kruglyak, L.2
  • 2
    • 43249129715 scopus 로고    scopus 로고
    • Gene-environment interaction in yeast gene expression
    • Smith, E. N.&Kruglyak, L. Gene-environment interaction in yeast gene expression. PLoS Biol. 6, e83 (2008).
    • (2008) PLoS Biol. , vol.6
    • Smith, E.N.1    Kruglyak, L.2
  • 3
    • 77957942349 scopus 로고    scopus 로고
    • Selection at linked sites shapes heritable phenotypic variation in C. Elegans
    • Rockman, M. V., Skrovanek, S. S. & Kruglyak, L. Selection at linked sites shapes heritable phenotypic variation in C. elegans. Science 330, 372-376 (2010).
    • (2010) Science , vol.330 , pp. 372-376
    • Rockman, M.V.1    Skrovanek, S.S.2    Kruglyak, L.3
  • 4
    • 66449134529 scopus 로고    scopus 로고
    • High resolution mapping of expression QTLs in heterogeneous stock mice in multiple tissues
    • Huang, G. J. et al. High resolution mapping of expression QTLs in heterogeneous stock mice in multiple tissues. Genome Res. 19, 1133-1140 (2009).
    • (2009) Genome Res. , vol.19 , pp. 1133-1140
    • Huang, G.J.1
  • 5
    • 34249055193 scopus 로고    scopus 로고
    • Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis
    • West, M. A. L. et al. Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis. Genetics 175, 1441-1450 (2007).
    • (2007) Genetics , vol.175 , pp. 1441-1450
    • West, M.A.L.1
  • 6
    • 84885645853 scopus 로고    scopus 로고
    • Transcriptome and genome sequencing uncovers functional variation in humans
    • Lappalainen, T. et al. Transcriptome and genome sequencing uncovers functional variation in humans. Nature 501, 506-511 (2013).
    • (2013) Nature , vol.501 , pp. 506-511
    • Lappalainen, T.1
  • 7
    • 13444306165 scopus 로고    scopus 로고
    • The landscape of genetic complexity across 5,700 gene expression traits in yeast
    • Brem, R. B. & Kruglyak, L. The landscape of genetic complexity across 5,700 gene expression traits in yeast. Proc. Natl Acad. Sci. USA 102, 1572-1577 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 1572-1577
    • Brem, R.B.1    Kruglyak, L.2
  • 8
    • 35648969195 scopus 로고    scopus 로고
    • Genetic basis of proteome variation in yeast
    • Foss, E. J. et al. Genetic basis of proteome variation in yeast. Nature Genet. 39, 1369-1375 (2007).
    • (2007) Nature Genet. , vol.39 , pp. 1369-1375
    • Foss, E.J.1
  • 9
    • 80053337795 scopus 로고    scopus 로고
    • Genetic variation shapes protein networks mainly through nontranscriptional mechanisms
    • Foss, E. J. et al. Genetic variation shapes protein networks mainly through nontranscriptional mechanisms. PLoS Biol. 9, e1001144 (2011).
    • (2011) PLoS Biol. , vol.9
    • Foss, E.J.1
  • 10
    • 79959812980 scopus 로고    scopus 로고
    • Comparative analysis of proteome and transcriptome variation in mouse
    • Ghazalpour, A. et al. Comparative analysis of proteome and transcriptome variation in mouse. PLoS Genet. 7, e1001393 (2011).
    • (2011) PLoS Genet. , vol.7
    • Ghazalpour, A.1
  • 11
    • 84879879014 scopus 로고    scopus 로고
    • Variation and genetic control of protein abundance in humans
    • Wu, L. et al. Variation and genetic control of protein abundance in humans. Nature 499, 79-82 (2013).
    • (2013) Nature , vol.499 , pp. 79-82
    • Wu, L.1
  • 13
    • 84883698933 scopus 로고    scopus 로고
    • Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast
    • Skelly, D. A. et al. Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast. Genome Res. 23, 1496-1504 (2013).
    • (2013) Genome Res. , vol.23 , pp. 1496-1504
    • Skelly, D.A.1
  • 14
    • 77951143253 scopus 로고    scopus 로고
    • Dissection of genetically complex traits with extremely large pools of yeast segregants
    • Ehrenreich, I. M. et al. Dissection of genetically complex traits with extremely large pools of yeast segregants. Nature 464, 1039-1042 (2010).
    • (2010) Nature , vol.464 , pp. 1039-1042
    • Ehrenreich, I.M.1
  • 15
    • 0142184341 scopus 로고    scopus 로고
    • Global analysis of protein localization in budding yeast
    • Huh, W.-K. et al. Global analysis of protein localization in budding yeast. Nature 425, 686-691 (2003).
    • (2003) Nature , vol.425 , pp. 686-691
    • Huh, W.-K.1
  • 16
    • 84867862278 scopus 로고    scopus 로고
    • High-resolution genetic mapping with pooled sequencing
    • Edwards, M. D. & Gifford, D. K. High-resolution genetic mapping with pooled sequencing. BMC Bioinformatics 13, S8 (2012).
    • (2012) BMC Bioinformatics , vol.13
    • Edwards, M.D.1    Gifford, D.K.2
  • 17
    • 84873724658 scopus 로고    scopus 로고
    • A completemass-spectrometricmapof the yeast proteome applied to quantitative trait analysis
    • Picotti, P. et al.A completemass-spectrometricmapof the yeast proteome applied to quantitative trait analysis. Nature 494, 266-270 (2013).
    • (2013) Nature , vol.494 , pp. 266-270
    • Picotti, P.1
  • 18
    • 0037177625 scopus 로고    scopus 로고
    • Genetic dissection of transcriptional regulation in budding yeast
    • Brem, R. B., Yvert, G., Clinton, R.& Kruglyak, L. Genetic dissection of transcriptional regulation in budding yeast. Science 296, 752-755 (2002).
    • (2002) Science , vol.296 , pp. 752-755
    • Brem, R.B.1    Yvert, G.2    Clinton, R.3    Kruglyak, L.4
  • 19
    • 66149119826 scopus 로고    scopus 로고
    • Modularity and interactions in the genetics of gene expression
    • Litvin, O., Causton, H. C., Chen, B. J. & Pe'er, D. Modularity and interactions in the genetics of gene expression. Proc. Natl Acad. Sci. USA 106, 6441-6446 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 6441-6446
    • Litvin, O.1    Causton, H.C.2    Chen, B.J.3    Pe'Er, D.4
  • 20
    • 0026559542 scopus 로고
    • Regulation of gene expression by oxygen in Saccharomyces cerevisiae
    • Zitomer, R. S. & Lowry, C. V. Regulation of gene expression by oxygen in Saccharomyces cerevisiae. Microbiol. Rev. 56, 1-11 (1992).
    • (1992) Microbiol. Rev. , vol.56 , pp. 1-11
    • Zitomer, R.S.1    Lowry, C.V.2
  • 21
    • 0344117668 scopus 로고    scopus 로고
    • A 'natural' mutation in Saccharomyces cerevisiae strains derived from S288c affects the complex regulatory gene HAP1 (CYP1)
    • Gaisne, M., Bécam, A. M., Verdiere, J. & Herbert, C. J. A. A 'natural' mutation in Saccharomyces cerevisiae strains derived from S288c affects the complex regulatory gene HAP1 (CYP1). Curr. Genet. 36, 195-200 (1999).
    • (1999) Curr. Genet. , vol.36 , pp. 195-200
    • Gaisne, M.1    Bécam, A.M.2    Verdiere, J.3    Herbert, C.J.A.4
  • 22
    • 4544352942 scopus 로고    scopus 로고
    • Transcriptional regulatory code of a eukaryotic genome
    • Harbison, C. T. et al. Transcriptional regulatory code of a eukaryotic genome. Nature 431, 99-104 (2004).
    • (2004) Nature , vol.431 , pp. 99-104
    • Harbison, C.T.1
  • 23
    • 84884522638 scopus 로고    scopus 로고
    • Hypoxia and gene expression in eukaryotic microbes
    • Butler, G. Hypoxia and gene expression in eukaryotic microbes. Annu. Rev. Microbiol. 67, 291-312 (2013).
    • (2013) Annu. Rev. Microbiol. , vol.67 , pp. 291-312
    • Butler, G.1
  • 25
    • 60749127330 scopus 로고    scopus 로고
    • Glucose regulates transcription in yeast through a network of signaling pathways
    • Zaman, S., Lippman, S. I., Schneper, L., Slonim, N.& Broach, J. R. Glucose regulates transcription in yeast through a network of signaling pathways. Mol. Syst. Biol. 5, 245 (2009).
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 245
    • Zaman, S.1    Lippman, S.I.2    Schneper, L.3    Slonim, N.4    Broach, J.R.5
  • 26
    • 74049104785 scopus 로고    scopus 로고
    • Niche-driven evolution of metabolic and life-history strategies in natural and domesticated populations of Saccharomyces cerevisiae
    • Spor, A. et al. Niche-driven evolution of metabolic and life-history strategies in natural and domesticated populations of Saccharomyces cerevisiae.BMCEvol. Biol. 9, 296 (2009).
    • (2009) BMCEvol. Biol. , vol.9 , pp. 296
    • Spor, A.1
  • 27
    • 79959847334 scopus 로고    scopus 로고
    • Trait variation in yeast is defined by population history
    • Warringer, J. et al. Trait variation in yeast is defined by population history. PLoS Genet. 7, e1002111 (2011).
    • (2011) PLoS Genet. , vol.7
    • Warringer, J.1
  • 28
    • 77649242421 scopus 로고    scopus 로고
    • Evidence for widespread adaptive evolution of gene expression in budding yeast
    • Fraser, H. B., Moses, A. M. & Schadt, E. E. Evidence for widespread adaptive evolution of gene expression in budding yeast. Proc. Natl Acad. Sci. USA 107, 2977-2982 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 2977-2982
    • Fraser, H.B.1    Moses, A.M.2    Schadt, E.E.3
  • 29
    • 84883158858 scopus 로고    scopus 로고
    • Natural variation in the yeast glucose-signaling network reveals a new role for the Mig3p transcription factor
    • Lewis, J. A. & Gasch, A. P. Natural variation in the yeast glucose-signaling network reveals a new role for the Mig3p transcription factor.G3Gene Genomes Genetics 2, 1607-1612 (2012).
    • (2012) G3Gene Genomes Genetics , vol.2 , pp. 1607-1612
    • Lewis, J.A.1    Gasch, A.P.2
  • 30
    • 49249139050 scopus 로고    scopus 로고
    • The post-transcriptional steps of eukaryotic ribosome biogenesis
    • Henras, A. K. et al. The post-transcriptional steps of eukaryotic ribosome biogenesis. Cell. Mol. Life Sci. 65, 2334-2359 (2008).
    • (2008) Cell. Mol. Life Sci. , vol.65 , pp. 2334-2359
    • Henras, A.K.1
  • 31
    • 20144389462 scopus 로고    scopus 로고
    • Construction, verification and experimental use of two epitopetagged collections of budding yeast strains
    • Howson, R. et al. Construction, verification and experimental use of two epitopetagged collections of budding yeast strains. Comp. Funct. Genomics 6, 2-16 (2005).
    • (2005) Comp. Funct. Genomics , vol.6 , pp. 2-16
    • Howson, R.1
  • 32
    • 34247575803 scopus 로고    scopus 로고
    • High-throughput strain construction and systematic synthetic lethal screeningin Saccharomyces cerevisiae
    • Tong, A. H. Y. & Boone, C. High-throughput strain construction and systematic synthetic lethal screeningin Saccharomyces cerevisiae.Methods in Microbiology36, 369-707 (2007).
    • (2007) Methods in Microbiology , vol.36 , pp. 369-707
    • Tong, A.H.Y.1    Boone, C.2
  • 33
    • 33745220278 scopus 로고    scopus 로고
    • Single-cell proteomic analysis of S. Cerevisiae reveals the architecture of biological noise
    • Newman, J. R. S. et al. Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 441, 840-846 (2006).
    • (2006) Nature , vol.441 , pp. 840-846
    • Newman, J.R.S.1
  • 34
    • 78649773164 scopus 로고    scopus 로고
    • Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
    • Adey, A. et al. Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol. 11, R119 (2010).
    • (2010) Genome Biol. , vol.11
    • Adey, A.1
  • 35
    • 84873722165 scopus 로고    scopus 로고
    • Finding the sources of missing heritability in a yeast cross
    • Bloom, J. S., Ehrenreich, I. M., Loo, W. T., Lite, T.-L. V. & Kruglyak, L. Finding the sources of missing heritability in a yeast cross. Nature 494, 234-237 (2013).
    • (2013) Nature , vol.494 , pp. 234-237
    • Bloom, J.S.1    Ehrenreich, I.M.2    Loo, W.T.3    Lite, T.-L.V.4    Kruglyak, L.5
  • 36
    • 77956285690 scopus 로고    scopus 로고
    • Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
    • Meyer, M. & Kircher, M. Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing. Cold Spring Harbor Protocols http://dx.doi.org/10.1101/pdb.prot5448 (2010).
    • (2010) Cold Spring Harbor Protocols
    • Meyer, M.1    Kircher, M.2
  • 37
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 39
    • 0042856391 scopus 로고    scopus 로고
    • Trans-acting regulatory variation in Saccharomyces cerevisiaeand the role of transcription factors
    • Yvert, G. et al. Trans-acting regulatory variation in Saccharomyces cerevisiaeand the role of transcription factors. Nature Genet. 35, 57-64 (2003).
    • (2003) Nature Genet. , vol.35 , pp. 57-64
    • Yvert, G.1
  • 40
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J. D. & Tibshirani, R. Statistical significance for genomewide studies. Proc. Natl Acad. Sci. USA 100, 9440-9445 (2003).
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 41
    • 84862214168 scopus 로고    scopus 로고
    • ScerTF: A comprehensive database of benchmarked position weight matrices for Saccharomyces species
    • Spivak, A. T. & Stormo, G. D. ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species. Nucleic Acids Res. 40, D162-D168 (2012).
    • (2012) Nucleic Acids Res. , vol.40
    • Spivak, A.T.1    Stormo, G.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.