메뉴 건너뛰기




Volumn 106, Issue 37, 2009, Pages 15544-15548

Protein quantification across hundreds of experimental conditions

Author keywords

Kd tree; Orthogonal range query; Quantitative proteomics; Space partitioning data structures; Tandem mass spectrometry

Indexed keywords

ACCURACY; ALGORITHM; ARTICLE; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; QUANTITATIVE ANALYSIS; TANDEM MASS SPECTROMETRY;

EID: 70349436819     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0904100106     Document Type: Article
Times cited : (36)

References (23)
  • 1
    • 33645813378 scopus 로고    scopus 로고
    • Mass spectrometry and protein analysis
    • DomonB, Aebersold R (2006) Mass spectrometry and protein analysis. Science 312:212-217.
    • (2006) Science , vol.312 , pp. 212-217
    • Domon, B.1    Aebersold, R.2
  • 2
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold R, Mann M (2003) Mass spectrometry-based proteomics. Nature 422:198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 3
    • 34547572949 scopus 로고    scopus 로고
    • Is Proteomics the New Genomics?
    • DOI 10.1016/j.cell.2007.07.032, PII S0092867407009701
    • Cox J, Mann M (2007) Is proteomics the new genomics? Cell 130:395-398. (Pubitemid 47198310)
    • (2007) Cell , vol.130 , Issue.3 , pp. 395-398
    • Cox, J.1    Mann, M.2
  • 4
    • 33644524918 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics turns quantitative
    • Ong S, Mann M (2005) Mass spectrometry-based proteomics turns quantitative. Nat Chem Biol 1:252-262.
    • (2005) Nat Chem Biol , vol.1 , pp. 252-262
    • Ong, S.1    Mann, M.2
  • 5
    • 7044246160 scopus 로고    scopus 로고
    • Open mass spectrometry search algorithm
    • Geer LY, et al. (2004) Open mass spectrometry search algorithm. J Proteome Res 3:958-964.
    • (2004) J Proteome Res , vol.3 , pp. 958-964
    • Geer, L.Y.1
  • 6
    • 0141955057 scopus 로고    scopus 로고
    • A method for reducing the time required to match protein sequences with tandem mass spectra
    • Craig R, Beavis RC (2003) A method for reducing the time required to match protein sequences with tandem mass spectra. Rapid Commun Mass Spectrom 17:2310-2316. (Pubitemid 37243315)
    • (2003) Rapid Communications in Mass Spectrometry , vol.17 , Issue.20 , pp. 2310-2316
    • Craig, R.1    Beavis, R.C.2
  • 7
    • 0000857494 scopus 로고
    • An approach to correlate MS/MS data to amino acid sequences in a protein database
    • Eng JK, McCormack AL, Yates JR (1994) An approach to correlate MS/MS data to amino acid sequences in a protein database. J Am Soc Mass Spectrom 5:976-989.
    • (1994) J Am Soc Mass Spectrom , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 9
    • 33750615386 scopus 로고    scopus 로고
    • PEPPeR, a platform for experimental proteomic pattern recognition
    • Jaffe JD, et al. (2006) PEPPeR, a platform for experimental proteomic pattern recognition. Mol Cell Proteomics 5:1927-1941.
    • (2006) Mol Cell Proteomics , vol.5 , pp. 1927-1941
    • Jaffe, J.D.1
  • 10
    • 33846706581 scopus 로고    scopus 로고
    • TOPP - The OpenMS proteomics pipeline
    • Kohlbacher O, et al. (2007) TOPP - The OpenMS proteomics pipeline. Bioinformatics 23:191-197.
    • (2007) Bioinformatics , vol.23 , pp. 191-197
    • Kohlbacher, O.1
  • 13
    • 17844394177 scopus 로고    scopus 로고
    • Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry
    • DOI 10.1074/mcp.R500005-MCP200
    • Listgarten J, Emili A (2005) Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry. Mol Cell Proteomics 4:419-434. (Pubitemid 40590562)
    • (2005) Molecular and Cellular Proteomics , vol.4 , Issue.4 , pp. 419-434
    • Listgarten, J.1    Emili, A.2
  • 14
    • 41549117597 scopus 로고    scopus 로고
    • Aquantitative analysis software tool for mass spectrometry-based proteomics
    • Park SK, Venable JD, Xu T, Yates JR (2008)Aquantitative analysis software tool for mass spectrometry-based proteomics. Nat Methods 5:319-322.
    • (2008) Nat Methods , vol.5 , pp. 319-322
    • Park, S.K.1    Venable, J.D.2    Xu, T.3    Yates, J.R.4
  • 15
    • 39449131119 scopus 로고    scopus 로고
    • Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution μLC-MS data
    • Finney GL, et al. (2008) Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution μLC-MS data. Anal Chem 80:961-971.
    • (2008) Anal Chem , vol.80 , pp. 961-971
    • Finney, G.L.1
  • 16
    • 35348965139 scopus 로고    scopus 로고
    • SuperHirn - A novel tool for high resolution LC-MS-based peptide/protein profiling
    • Mueller LN, et al. (2007) SuperHirn - A novel tool for high resolution LC-MS-based peptide/protein profiling. Proteomics 7:3470-3480.
    • (2007) Proteomics , vol.7 , pp. 3470-3480
    • Mueller, L.N.1
  • 17
    • 49949116902 scopus 로고    scopus 로고
    • The impact of microRNAs on protein output
    • Baek D, et al. (2008) The impact of microRNAs on protein output. Nature 455:64-71.
    • (2008) Nature , vol.455 , pp. 64-71
    • Baek, D.1
  • 18
    • 58149401890 scopus 로고    scopus 로고
    • The impact of peptide abundance and dynamic range on stable-isotope-based quantitative proteomic analyses
    • Bakalarski CE, et al. (2008) The impact of peptide abundance and dynamic range on stable-isotope-based quantitative proteomic analyses. J Proteome Res 7:4756-4765.
    • (2008) J Proteome Res , vol.7 , pp. 4756-4765
    • Bakalarski, C.E.1
  • 20
    • 0016557674 scopus 로고
    • Multidimensional binary search trees used for associative searching
    • Bentley JL (1975) Multidimensional binary search trees used for associative searching. Commun ACM 18:509-517.
    • (1975) Commun ACM , vol.18 , pp. 509-517
    • Bentley, J.L.1
  • 21
    • 32344442813 scopus 로고    scopus 로고
    • Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics
    • Callister SJ, et al. (2006) Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics. J Proteome Res 5:277-286.
    • (2006) J Proteome Res , vol.5 , pp. 277-286
    • Callister, S.J.1
  • 22
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling byaminoacids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong SE, et al. (2002) Stable isotope labeling byaminoacids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1:376-386.
    • (2002) Mol Cell Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1
  • 23
    • 63049092806 scopus 로고    scopus 로고
    • Chromatin-specific remodeling by HMGB1 and linker histone H1 silences proinflammatory genes during endotoxin tolerance
    • Gazzar ME, et al. (2009) Chromatin-specific remodeling by HMGB1 and linker histone H1 silences proinflammatory genes during endotoxin tolerance. Mol Cell Biol 29:1959-1971.
    • (2009) Mol Cell Biol , vol.29 , pp. 1959-1971
    • Gazzar, M.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.