메뉴 건너뛰기




Volumn 37, Issue 4, 2004, Pages 487-492

Synonymous codon usage analysis of the mycobacteriophage Bxz1 and its plating bacteria M. smegmatis: Identification of highly and lowly expressed genes of Bxz1 and the possible function of its tRNA species

Author keywords

Multivariate analysis; Mycobacteriophage Bxz1; Relative synonymous codon usage (RSCU)

Indexed keywords

AMINO ACID; TRANSFER RNA;

EID: 4444239271     PISSN: 12258687     EISSN: None     Source Type: Journal    
DOI: 10.5483/bmbrep.2004.37.4.487     Document Type: Article
Times cited : (14)

References (14)
  • 1
    • 0025297285 scopus 로고
    • Codon preferences in free-living microorganisms
    • Andersson, S. G. and Kurland, C. G. (1990) Codon preferences in free-living microorganisms. Microbiol. Rev. 54, 198-210.
    • (1990) Microbiol. Rev. , vol.54 , pp. 198-210
    • Andersson, S.G.1    Kurland, C.G.2
  • 2
    • 0027960812 scopus 로고
    • Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli
    • Chen, G. T. and Inouye, M. (1994) Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli. Genes Dev. 8, 2641-2652.
    • (1994) Genes Dev. , vol.8 , pp. 2641-2652
    • Chen, G.T.1    Inouye, M.2
  • 3
    • 0026754531 scopus 로고
    • Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes
    • Daniels, D. L., Plunkett III, G., Burland, V. and Blattner, F. R. (1992) Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. Science 257, 771-778.
    • (1992) Science , vol.257 , pp. 771-778
    • Daniels, D.L.1    Plunkett III, G.2    Burland, V.3    Blattner, F.R.4
  • 4
  • 5
    • 0035948585 scopus 로고    scopus 로고
    • Gene expressivity is the main factor in dictating the codon usage variation among the genes in Pseudomonas aeruginosa
    • Gupta, S. K. and Ghosh, T. C. (2001) Gene expressivity is the main factor in dictating the codon usage variation among the genes in Pseudomonas aeruginosa. Gene 273, 63-70.
    • (2001) Gene , vol.273 , pp. 63-70
    • Gupta, S.K.1    Ghosh, T.C.2
  • 6
    • 0027456546 scopus 로고
    • DNA sequence, structure and gene expression of mycobacteriophage L5: A phage system for mycobacterial genetics
    • Hatfull, G. F. and Sarkis, G. J. (1993) DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics. Mol. Microbiol. 7, 395-405.
    • (1993) Mol. Microbiol. , vol.7 , pp. 395-405
    • Hatfull, G.F.1    Sarkis, G.J.2
  • 7
    • 0022589865 scopus 로고
    • Codon usage and gene expression
    • Holm, L. (1986) Codon usage and gene expression. Nucleic Acids Res. 7, 3075-3087.
    • (1986) Nucleic Acids Res. , vol.7 , pp. 3075-3087
    • Holm, L.1
  • 8
    • 0034616968 scopus 로고    scopus 로고
    • Functional role of mycobacteriophage transfer RNAs
    • Kunisawa, T. (2000) Functional role of mycobacteriophage transfer RNAs. J. Theror. Biol. 205, 167-170.
    • (2000) J. Theror. Biol. , vol.205 , pp. 167-170
    • Kunisawa, T.1
  • 9
    • 0032585328 scopus 로고    scopus 로고
    • Comparison of synonymous codon distribution patterns of bacteriophage and host genomes
    • Kunisawa, T. (1998) Comparison of synonymous codon distribution patterns of bacteriophage and host genomes. DNA Res. 5, 319-326.
    • (1998) DNA Res. , vol.5 , pp. 319-326
    • Kunisawa, T.1
  • 11
    • 0023650543 scopus 로고
    • The codon adaptation index a measure of directional synonymous codon usage bias, and its potential applications
    • Sharp, P. M. and Li, W.-H. (1987) The codon adaptation index a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15, 1281-1295.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.-H.2
  • 12
    • 0025988205 scopus 로고
    • Synonymous codon usage in Saccharomyces cerevisiae
    • Sharp, P. M. and Cowe, E. (1991) Synonymous codon usage in Saccharomyces cerevisiae. Yeast 7, 657-678.
    • (1991) Yeast , vol.7 , pp. 657-678
    • Sharp, P.M.1    Cowe, E.2
  • 13
    • 0015924702 scopus 로고
    • Function of the bacteriophage T4 transfer RNA's
    • Wilson, J. H. (1973) Function of the bacteriophage T4 transfer RNA's. J. Mol. Biol. 74, 753-757.
    • (1973) J. Mol. Biol. , vol.74 , pp. 753-757
    • Wilson, J.H.1
  • 14
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • Wright, F. (1990) The 'effective number of codons' used in a gene. Gene 87, 23-29.
    • (1990) Gene , vol.87 , pp. 23-29
    • Wright, F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.